Wall clock time and date at job start Mon Mar 30 2020 04:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86806 * 120.00037 * 2 1 4 4 H 1.48496 * 109.46977 * 240.00300 * 3 2 1 5 5 H 1.48497 * 109.47069 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47037 * 120.00210 * 3 2 1 7 7 C 1.39589 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00372 * 180.02562 * 7 2 1 9 9 N 1.36117 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99497 * 180.02562 * 9 7 2 11 11 O 1.21493 * 120.00034 * 0.02562 * 10 9 7 12 12 C 1.48836 * 119.99606 * 180.02562 * 10 9 7 13 13 O 1.21437 * 120.00093 * 6.26262 * 12 10 9 14 14 N 1.34773 * 119.99675 * 186.27441 * 12 10 9 15 15 C 1.45340 * 116.78009 * 358.87784 * 14 12 10 16 16 C 1.53103 * 109.92156 * 154.64662 * 15 14 12 17 17 C 1.54503 * 107.07238 * 53.61490 * 16 15 14 18 18 C 1.52562 * 108.39955 * 289.77360 * 17 16 15 19 19 H 1.08996 * 109.88596 * 291.33305 * 18 17 16 20 20 C 1.53321 * 108.82645 * 171.71117 * 18 17 16 21 21 C 1.54038 * 104.72067 * 266.55845 * 20 18 17 22 22 C 1.53818 * 105.82932 * 331.20982 * 21 20 18 23 23 C 1.43765 * 116.77446 * 178.86564 * 14 12 10 24 24 H 1.08999 * 107.07362 * 308.96150 * 23 14 12 25 25 H 0.97003 * 119.99747 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00739 * 0.02562 * 9 7 2 27 27 H 1.09009 * 109.38513 * 274.75843 * 15 14 12 28 28 H 1.09001 * 109.38605 * 34.53184 * 15 14 12 29 29 H 1.08999 * 109.83170 * 172.32706 * 16 15 14 30 30 H 1.09006 * 109.82587 * 293.25239 * 16 15 14 31 31 H 1.08992 * 109.31521 * 170.43914 * 17 16 15 32 32 H 1.09005 * 110.52761 * 49.81589 * 17 16 15 33 33 H 1.08999 * 110.81708 * 147.60275 * 20 18 17 34 34 H 1.08995 * 110.23567 * 25.21988 * 20 18 17 35 35 H 1.09000 * 110.17661 * 212.12061 * 21 20 18 36 36 H 1.09001 * 110.17333 * 90.30695 * 21 20 18 37 37 H 1.08994 * 110.00316 * 259.62470 * 22 21 20 38 38 H 1.09001 * 110.03232 * 138.29571 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0978 1.6964 -1.2125 5 1 1.2792 2.7465 0.0006 6 1 3.0979 1.6964 1.2125 7 6 2.0081 -1.2089 -0.0005 8 1 3.0881 -1.2089 -0.0001 9 7 1.3274 -2.3876 -0.0005 10 6 2.0014 -3.5549 -0.0005 11 8 3.2163 -3.5548 -0.0001 12 6 1.2572 -4.8438 -0.0011 13 8 0.0483 -4.8469 -0.1163 14 7 1.9250 -6.0075 0.1264 15 6 3.3719 -5.9237 0.2346 16 6 3.9115 -7.1500 0.9757 17 6 3.3662 -8.3976 0.2455 18 6 1.8661 -8.4915 0.5072 19 1 1.6870 -8.7331 1.5548 20 6 1.2782 -9.5987 -0.3754 21 6 0.7966 -8.8725 -1.6456 22 6 0.4342 -7.4453 -1.2010 23 6 1.1355 -7.2089 0.1423 24 1 0.3515 -7.0668 0.8861 25 1 -0.4850 0.8401 0.0004 26 1 0.3575 -2.3877 -0.0005 27 1 3.8077 -5.8837 -0.7638 28 1 3.6421 -5.0215 0.7834 29 1 5.0008 -7.1552 0.9378 30 1 3.5771 -7.1318 2.0131 31 1 3.8604 -9.2877 0.6345 32 1 3.5448 -8.3211 -0.8272 33 1 0.4404 -10.0870 0.1223 34 1 2.0472 -10.3295 -0.6257 35 1 -0.0809 -9.3730 -2.0550 36 1 1.5944 -8.8441 -2.3878 37 1 -0.6451 -7.3555 -1.0790 38 1 0.7872 -6.7237 -1.9379 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087771087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:17 Heat of formation + Delta-G solvation = -89.632671 kcal Electronic energy + Delta-G solvation = -21031.244757 eV Core-core repulsion = 17872.539881 eV Total energy + Delta-G solvation = -3158.704876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18359 -40.16124 -38.75940 -36.90320 -35.78212 -34.08019 -33.41312 -30.11243 -29.37857 -27.75758 -26.06648 -24.42553 -23.07714 -21.87046 -20.89260 -20.27306 -19.35011 -18.14947 -17.90432 -17.25218 -16.79548 -16.52621 -16.34143 -15.79270 -15.37957 -15.05579 -14.65082 -14.44964 -14.43773 -13.87846 -13.74716 -13.61577 -13.00079 -12.88362 -12.66205 -12.56425 -12.18491 -12.15667 -12.12866 -12.00327 -11.75164 -11.58986 -11.47742 -11.28128 -11.13090 -10.29135 -9.83198 -9.57542 -8.65873 -6.10604 0.58979 1.40415 1.48631 1.53394 1.76188 2.27339 2.32764 3.06292 3.13866 3.51122 3.57655 3.75685 3.95056 4.08969 4.10219 4.23712 4.39041 4.47815 4.55745 4.60787 4.69350 4.80546 4.95106 5.01841 5.04185 5.07855 5.14623 5.16141 5.22927 5.27703 5.31623 5.40256 5.50933 5.66096 5.74820 6.09183 6.34688 6.80213 6.98826 7.27645 7.79223 8.49750 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037734 B = 0.004839 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.851586 B = 5784.571782 C = 6315.354852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.344 4.344 8 H 0.102 0.898 9 N -0.511 5.511 10 C 0.388 3.612 11 O -0.597 6.597 12 C 0.499 3.501 13 O -0.565 6.565 14 N -0.561 5.561 15 C 0.090 3.910 16 C -0.128 4.128 17 C -0.108 4.108 18 C -0.087 4.087 19 H 0.089 0.911 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.128 4.128 23 C 0.143 3.857 24 H 0.048 0.952 25 H 0.288 0.712 26 H 0.398 0.602 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -16.942 0.600 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.119 0.881 9 N -0.145 5.145 10 C 0.174 3.826 11 O -0.487 6.487 12 C 0.284 3.716 13 O -0.445 6.445 14 N -0.292 5.292 15 C -0.031 4.031 16 C -0.166 4.166 17 C -0.145 4.145 18 C -0.106 4.106 19 H 0.107 0.893 20 C -0.145 4.145 21 C -0.153 4.153 22 C -0.167 4.167 23 C 0.039 3.961 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.233 0.767 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.443 -16.871 0.554 17.455 hybrid contribution -0.630 1.267 -0.158 1.424 sum 3.814 -15.604 0.396 16.068 Atomic orbital electron populations 1.69556 1.07928 1.30839 1.45251 1.26559 0.96470 1.03533 0.94371 0.84741 0.77717 0.74709 0.79681 1.18856 1.19230 1.18699 1.19966 0.93744 0.82947 1.50735 0.88056 1.41672 1.10123 1.04804 1.57865 1.19518 0.88002 0.85171 0.89916 1.90411 1.13441 1.86255 1.58557 1.20391 0.87078 0.86374 0.77798 1.90651 1.14983 1.88145 1.50742 1.46870 1.08428 1.04426 1.69507 1.22301 0.77186 1.02021 1.01617 1.22198 1.01842 0.93396 0.99154 1.21788 0.93687 0.98401 1.00649 1.21381 0.96092 0.91698 1.01380 0.89265 1.22121 1.01382 0.96574 0.94438 1.22091 1.01608 0.93118 0.98517 1.22348 1.00104 0.98337 0.95916 1.20539 0.92531 0.85189 0.97839 0.93406 0.90148 0.76727 0.93125 0.87843 0.88565 0.91181 0.88509 0.91804 0.90158 0.88735 0.90234 0.91564 0.92068 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.97 13.03 21.77 0.28 -48.69 16 2 C -0.01 -0.27 5.51 85.14 0.47 0.19 16 3 Si 1.01 40.95 29.56 68.60 2.03 42.98 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.34 -19.47 9.67 84.35 0.82 -18.65 16 8 H 0.10 5.81 7.15 -2.91 -0.02 5.79 16 9 N -0.51 -28.63 5.24 -308.87 -1.62 -30.25 16 10 C 0.39 20.38 7.62 87.08 0.66 21.04 16 11 O -0.60 -31.83 12.43 -3.69 -0.05 -31.88 16 12 C 0.50 23.27 7.17 87.08 0.62 23.89 16 13 O -0.57 -28.20 15.32 -3.52 -0.05 -28.26 16 14 N -0.56 -21.00 2.89 -810.09 -2.34 -23.34 16 15 C 0.09 3.07 4.96 86.63 0.43 3.50 16 16 C -0.13 -2.97 6.18 31.14 0.19 -2.78 16 17 C -0.11 -2.02 5.04 30.96 0.16 -1.87 16 18 C -0.09 -1.80 2.85 -11.14 -0.03 -1.83 16 19 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 20 C -0.11 -1.71 6.32 31.05 0.20 -1.52 16 21 C -0.12 -2.34 6.80 31.22 0.21 -2.13 16 22 C -0.13 -3.83 5.49 30.99 0.17 -3.66 16 23 C 0.14 4.38 2.55 45.31 0.12 4.50 16 24 H 0.05 1.63 7.78 -2.39 -0.02 1.61 16 25 H 0.29 14.43 8.30 -92.71 -0.77 13.67 16 26 H 0.40 22.79 7.36 -92.71 -0.68 22.11 16 27 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.10 4.24 5.04 -28.15 -0.14 4.10 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.61 8.13 -2.38 -0.02 1.59 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.28 8.07 -2.38 -0.02 1.26 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.11 7.79 -2.39 -0.02 1.09 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.04 1.30 7.76 -2.39 -0.02 1.28 16 Total: -1.00 -65.51 302.46 2.52 -63.00 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.26 Total: 35.75 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 4.01 Total: 20.70 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -3.68 Total: -102.28 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: -0.10 Total: -60.14 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -65.51 2.52 -63.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087771087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.636 kcal (2) G-P(sol) polarization free energy of solvation -65.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds