Wall clock time and date at job start Mon Mar 30 2020 05:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46841 * 2 1 4 4 C 1.52998 * 110.65563 * 57.08803 * 3 2 1 5 5 C 1.51588 * 110.68761 * 294.22338 * 3 2 1 6 6 O 1.21226 * 127.15622 * 61.51221 * 5 3 2 7 7 N 1.34773 * 105.67951 * 241.76397 * 5 3 2 8 8 C 1.33783 * 111.64661 * 359.78244 * 7 5 3 9 9 O 1.21541 * 123.77100 * 179.97438 * 8 7 5 10 10 N 1.34526 * 112.46060 * 0.02562 * 8 7 5 11 11 C 1.46505 * 126.68979 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47308 * 84.87847 * 11 10 8 13 13 C 1.50701 * 115.54974 * 304.28869 * 12 11 10 14 14 H 1.08002 * 120.00524 * 95.15646 * 13 12 11 15 15 C 1.37886 * 119.99719 * 275.15088 * 13 12 11 16 16 N 1.31517 * 119.99852 * 6.77165 * 15 13 12 17 17 Si 1.86795 * 119.99923 * 186.76878 * 15 13 12 18 18 H 1.48497 * 109.47303 * 60.00091 * 17 15 13 19 19 H 1.48499 * 109.47189 * 299.99956 * 17 15 13 20 20 H 1.48505 * 109.47031 * 180.02562 * 17 15 13 21 21 C 1.53002 * 117.50001 * 89.95193 * 12 11 10 22 22 C 1.52997 * 117.50264 * 158.61392 * 12 11 10 23 23 H 1.09005 * 109.46886 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47454 * 300.00055 * 1 2 3 25 25 H 1.09000 * 109.47305 * 60.00578 * 1 2 3 26 26 H 1.08997 * 109.47454 * 239.99944 * 2 1 3 27 27 H 1.09000 * 109.47305 * 119.99422 * 2 1 3 28 28 H 1.08991 * 109.46971 * 175.71588 * 4 3 2 29 29 H 1.09007 * 109.46640 * 295.71072 * 4 3 2 30 30 H 1.08995 * 109.47756 * 55.70764 * 4 3 2 31 31 H 0.96996 * 124.17027 * 179.74864 * 7 5 3 32 32 H 1.08998 * 109.47122 * 324.87368 * 11 10 8 33 33 H 1.09004 * 109.46776 * 204.87453 * 11 10 8 34 34 H 0.97001 * 119.99849 * 4.80077 * 16 15 13 35 35 H 1.09004 * 117.49991 * 214.99889 * 21 12 11 36 36 H 1.09003 * 117.50081 * 0.02812 * 21 12 11 37 37 H 1.09005 * 117.49378 * 359.97438 * 22 12 11 38 38 H 1.09001 * 117.50188 * 144.97171 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4864 2.2107 1.2019 5 6 1.6698 2.1414 -1.2933 6 8 0.5542 2.3529 -1.7180 7 7 2.8391 2.4737 -1.8753 8 6 3.8853 2.0902 -1.1350 9 8 5.0432 2.2790 -1.4526 10 7 3.5127 1.4711 -0.0002 11 6 4.3990 0.9269 1.0316 12 6 4.7907 2.0395 2.0060 13 6 5.4272 3.2550 1.3828 14 1 4.8213 4.1130 1.1316 15 6 6.7832 3.2718 1.1334 16 7 7.4986 2.1831 1.3143 17 14 7.6041 4.8408 0.5386 18 1 7.4116 5.9133 1.5475 19 1 6.9970 5.2590 -0.7504 20 1 9.0562 4.5971 0.3454 21 6 3.8932 2.2589 3.2256 22 6 5.2750 1.6229 3.3963 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.9204 3.2102 1.2255 29 1 0.4024 2.2873 1.1161 30 1 1.7417 1.6818 2.1201 31 1 2.9128 2.9336 -2.7261 32 1 5.2959 0.5215 0.5633 33 1 3.8822 0.1347 1.5734 34 1 7.0626 1.3509 1.5556 35 1 3.7632 3.2825 3.5771 36 1 3.0238 1.6104 3.3339 37 1 5.3141 0.5561 3.6168 38 1 6.0543 2.2277 3.8600 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088257281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:09 Heat of formation + Delta-G solvation = -21.612170 kcal Electronic energy + Delta-G solvation = -22005.191025 eV Core-core repulsion = 18849.435739 eV Total energy + Delta-G solvation = -3155.755286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.02436 -38.28038 -37.19209 -36.03232 -34.50032 -32.49238 -31.78832 -29.29243 -26.76112 -24.98804 -24.80327 -23.12293 -21.60508 -20.95019 -19.84476 -19.21933 -17.77465 -16.54867 -16.21705 -15.84751 -15.38559 -14.87689 -14.57274 -14.28977 -13.65136 -13.50340 -13.48328 -13.11345 -12.85395 -12.37871 -12.31008 -12.10609 -11.76609 -11.68624 -11.22288 -11.08262 -10.88885 -10.67739 -10.45385 -10.14119 -10.02841 -9.86505 -9.72421 -9.50760 -8.52978 -8.47937 -8.36484 -8.01263 -6.22429 -3.95254 1.96965 2.80871 3.43497 3.50103 3.57488 3.71063 3.75152 4.30409 4.63709 4.68811 4.86739 5.03980 5.23803 5.36425 5.44333 5.51415 5.60146 5.72449 5.81450 5.89289 5.94820 6.01128 6.13984 6.19886 6.24028 6.25252 6.36124 6.42385 6.52741 6.58856 6.82465 7.09879 7.19199 7.33979 7.68798 7.81903 8.29579 8.50045 8.86634 8.98736 9.77654 11.16658 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022885 B = 0.008332 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.217468 B = 3359.781781 C = 4009.875370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C 0.120 3.880 4 C -0.144 4.144 5 C 0.535 3.465 6 O -0.486 6.486 7 N -0.684 5.684 8 C 0.695 3.305 9 O -0.509 6.509 10 N -0.590 5.590 11 C 0.187 3.813 12 C 0.008 3.992 13 C -0.558 4.558 14 H 0.043 0.957 15 C 0.045 3.955 16 N -0.900 5.900 17 Si 1.059 2.941 18 H -0.293 1.293 19 H -0.288 1.288 20 H -0.284 1.284 21 C -0.195 4.195 22 C -0.175 4.175 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.424 0.576 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.270 0.730 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.170 -4.382 -0.992 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C 0.031 3.969 4 C -0.202 4.202 5 C 0.321 3.679 6 O -0.358 6.358 7 N -0.354 5.354 8 C 0.395 3.605 9 O -0.378 6.378 10 N -0.328 5.328 11 C 0.067 3.933 12 C 0.006 3.994 13 C -0.595 4.595 14 H 0.061 0.939 15 C -0.161 4.161 16 N -0.534 5.534 17 Si 0.888 3.112 18 H -0.220 1.220 19 H -0.215 1.215 20 H -0.210 1.210 21 C -0.232 4.232 22 C -0.213 4.213 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.265 0.735 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.508 -3.617 -1.584 11.226 hybrid contribution -1.435 -0.315 0.020 1.469 sum -11.943 -3.932 -1.565 12.671 Atomic orbital electron populations 1.21908 0.94167 1.01988 1.03526 1.21656 0.97024 0.92940 1.03488 1.21399 0.83259 0.97335 0.94935 1.22121 1.00744 1.01189 0.96174 1.20818 0.84037 0.77115 0.85955 1.90726 1.21754 1.54178 1.69154 1.44505 1.08554 1.57346 1.25006 1.15839 0.84231 0.79286 0.81116 1.91068 1.16056 1.57766 1.72940 1.47529 1.04022 1.60451 1.20822 1.21065 0.91021 0.93961 0.87301 1.19540 0.97856 0.96352 0.85622 1.20924 0.94861 0.98839 1.44899 0.93912 1.25458 0.94270 1.02732 0.93660 1.70747 1.39093 1.00533 1.43057 0.83698 0.76299 0.74855 0.76314 1.21986 1.21463 1.20958 1.22993 0.92573 1.00126 1.07531 1.22766 0.96795 0.98046 1.03690 0.92391 0.91945 0.91088 0.91355 0.90081 0.91046 0.90999 0.90042 0.73542 0.90077 0.92595 0.91919 0.90334 0.91433 0.91594 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.29 37.15 0.35 -1.33 16 2 C -0.11 -1.37 5.23 -26.73 -0.14 -1.51 16 3 C 0.12 1.81 0.86 -132.09 -0.11 1.69 16 4 C -0.14 -2.04 7.51 37.16 0.28 -1.76 16 5 C 0.53 8.43 7.27 -10.55 -0.08 8.35 16 6 O -0.49 -7.99 16.16 5.60 0.09 -7.90 16 7 N -0.68 -11.32 5.70 -15.79 -0.09 -11.41 16 8 C 0.69 14.23 7.99 -88.03 -0.70 13.53 16 9 O -0.51 -12.75 17.00 5.33 0.09 -12.66 16 10 N -0.59 -10.96 2.35 -165.09 -0.39 -11.35 16 11 C 0.19 3.73 5.63 -4.04 -0.02 3.70 16 12 C 0.01 0.17 1.17 -155.66 -0.18 -0.01 16 13 C -0.56 -14.84 7.16 -34.44 -0.25 -15.09 16 14 H 0.04 1.20 7.82 -52.49 -0.41 0.79 16 15 C 0.05 1.27 5.39 -17.82 -0.10 1.18 16 16 N -0.90 -26.27 13.47 55.43 0.75 -25.52 16 17 Si 1.06 26.24 29.91 -169.99 -5.08 21.15 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 C -0.20 -3.76 8.71 -26.69 -0.23 -4.00 16 22 C -0.17 -3.69 8.93 -26.69 -0.24 -3.93 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 25 H 0.07 0.85 6.17 -51.93 -0.32 0.53 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.92 7.43 -51.93 -0.39 0.53 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.87 6.74 -51.93 -0.35 0.52 16 30 H 0.08 1.10 5.58 -51.93 -0.29 0.81 16 31 H 0.42 5.98 8.96 -40.82 -0.37 5.61 16 32 H 0.08 1.84 7.46 -51.93 -0.39 1.45 16 33 H 0.06 0.93 7.33 -51.93 -0.38 0.55 16 34 H 0.27 7.68 6.12 -40.82 -0.25 7.43 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.07 1.11 6.20 -51.93 -0.32 0.79 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 306.29 15.07 4.62 4.62 Total: -1.00 -31.45 306.29 -6.58 -38.03 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.14 Total: 4.20 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.43 Total: 0.84 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.27 Total: -48.29 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.18 Total: -20.56 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -5.08 Total: 21.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.45 -6.58 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088257281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.420 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds