Wall clock time and date at job start Mon Mar 30 2020 05:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46841 * 2 1 4 4 C 1.52998 * 110.65563 * 57.08803 * 3 2 1 5 5 C 1.51588 * 110.68761 * 294.22338 * 3 2 1 6 6 O 1.21226 * 127.15622 * 61.51221 * 5 3 2 7 7 N 1.34773 * 105.67951 * 241.76397 * 5 3 2 8 8 C 1.33783 * 111.64661 * 359.78244 * 7 5 3 9 9 O 1.21541 * 123.77100 * 179.97438 * 8 7 5 10 10 N 1.34526 * 112.46060 * 0.02562 * 8 7 5 11 11 C 1.46505 * 126.68979 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47308 * 84.87847 * 11 10 8 13 13 C 1.50701 * 115.54974 * 304.28869 * 12 11 10 14 14 H 1.08002 * 120.00524 * 95.15646 * 13 12 11 15 15 C 1.37886 * 119.99719 * 275.15088 * 13 12 11 16 16 N 1.31517 * 119.99852 * 6.77165 * 15 13 12 17 17 Si 1.86795 * 119.99923 * 186.76878 * 15 13 12 18 18 H 1.48497 * 109.47303 * 60.00091 * 17 15 13 19 19 H 1.48499 * 109.47189 * 299.99956 * 17 15 13 20 20 H 1.48505 * 109.47031 * 180.02562 * 17 15 13 21 21 C 1.53002 * 117.50001 * 89.95193 * 12 11 10 22 22 C 1.52997 * 117.50264 * 158.61392 * 12 11 10 23 23 H 1.09005 * 109.46886 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47454 * 300.00055 * 1 2 3 25 25 H 1.09000 * 109.47305 * 60.00578 * 1 2 3 26 26 H 1.08997 * 109.47454 * 239.99944 * 2 1 3 27 27 H 1.09000 * 109.47305 * 119.99422 * 2 1 3 28 28 H 1.08991 * 109.46971 * 175.71588 * 4 3 2 29 29 H 1.09007 * 109.46640 * 295.71072 * 4 3 2 30 30 H 1.08995 * 109.47756 * 55.70764 * 4 3 2 31 31 H 0.96996 * 124.17027 * 179.74864 * 7 5 3 32 32 H 1.08998 * 109.47122 * 324.87368 * 11 10 8 33 33 H 1.09004 * 109.46776 * 204.87453 * 11 10 8 34 34 H 0.97001 * 119.99849 * 4.80077 * 16 15 13 35 35 H 1.09004 * 117.49991 * 214.99889 * 21 12 11 36 36 H 1.09003 * 117.50081 * 0.02812 * 21 12 11 37 37 H 1.09005 * 117.49378 * 359.97438 * 22 12 11 38 38 H 1.09001 * 117.50188 * 144.97171 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4864 2.2107 1.2019 5 6 1.6698 2.1414 -1.2933 6 8 0.5542 2.3529 -1.7180 7 7 2.8391 2.4737 -1.8753 8 6 3.8853 2.0902 -1.1350 9 8 5.0432 2.2790 -1.4526 10 7 3.5127 1.4711 -0.0002 11 6 4.3990 0.9269 1.0316 12 6 4.7907 2.0395 2.0060 13 6 5.4272 3.2550 1.3828 14 1 4.8213 4.1130 1.1316 15 6 6.7832 3.2718 1.1334 16 7 7.4986 2.1831 1.3143 17 14 7.6041 4.8408 0.5386 18 1 7.4116 5.9133 1.5475 19 1 6.9970 5.2590 -0.7504 20 1 9.0562 4.5971 0.3454 21 6 3.8932 2.2589 3.2256 22 6 5.2750 1.6229 3.3963 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.9204 3.2102 1.2255 29 1 0.4024 2.2873 1.1161 30 1 1.7417 1.6818 2.1201 31 1 2.9128 2.9336 -2.7261 32 1 5.2959 0.5215 0.5633 33 1 3.8822 0.1347 1.5734 34 1 7.0626 1.3509 1.5556 35 1 3.7632 3.2825 3.5771 36 1 3.0238 1.6104 3.3339 37 1 5.3141 0.5561 3.6168 38 1 6.0543 2.2277 3.8600 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088257281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:09 Heat of formation + Delta-G solvation = -42.696929 kcal Electronic energy + Delta-G solvation = -22006.105329 eV Core-core repulsion = 18849.435739 eV Total energy + Delta-G solvation = -3156.669590 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.41681 -39.74242 -38.83412 -37.48101 -35.89862 -33.89287 -33.75684 -30.39927 -28.25407 -26.86244 -26.18315 -24.26292 -23.17340 -22.55461 -21.10742 -21.01463 -19.17572 -18.40288 -17.61155 -17.24837 -16.70181 -16.42235 -15.91319 -15.73522 -15.66627 -15.08864 -14.78595 -14.45622 -14.29360 -14.10320 -13.54859 -13.33800 -13.00699 -12.83796 -12.77598 -12.66190 -12.45965 -12.10801 -12.03054 -11.83319 -11.65575 -11.40488 -11.31881 -10.92527 -10.46904 -10.36212 -10.15346 -9.65911 -8.38422 -6.08366 0.63492 1.38689 1.46960 1.56591 1.70891 2.12403 2.19872 2.61749 3.01321 3.37239 3.40948 3.57854 3.76725 4.06668 4.23900 4.33630 4.40570 4.51181 4.54354 4.59966 4.67323 4.77790 4.87577 4.94462 4.98331 5.07603 5.09121 5.10932 5.19161 5.28893 5.46307 5.49514 5.59008 5.74063 6.22072 6.23966 6.40740 6.48347 6.89086 7.31885 7.66918 9.02770 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022885 B = 0.008332 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.217468 B = 3359.781781 C = 4009.875370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C 0.119 3.881 4 C -0.140 4.140 5 C 0.537 3.463 6 O -0.488 6.488 7 N -0.678 5.678 8 C 0.689 3.311 9 O -0.566 6.566 10 N -0.590 5.590 11 C 0.197 3.803 12 C -0.023 4.023 13 C -0.550 4.550 14 H 0.018 0.982 15 C 0.001 3.999 16 N -0.929 5.929 17 Si 1.084 2.916 18 H -0.274 1.274 19 H -0.293 1.293 20 H -0.287 1.287 21 C -0.162 4.162 22 C -0.177 4.177 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.432 0.568 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.266 0.734 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.836 -5.525 0.167 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C 0.031 3.969 4 C -0.197 4.197 5 C 0.324 3.676 6 O -0.360 6.360 7 N -0.348 5.348 8 C 0.390 3.610 9 O -0.440 6.440 10 N -0.326 5.326 11 C 0.076 3.924 12 C -0.024 4.024 13 C -0.588 4.588 14 H 0.036 0.964 15 C -0.200 4.200 16 N -0.566 5.566 17 Si 0.911 3.089 18 H -0.200 1.200 19 H -0.220 1.220 20 H -0.212 1.212 21 C -0.199 4.199 22 C -0.215 4.215 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.274 0.726 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.245 -4.750 -0.411 14.077 hybrid contribution -0.712 0.065 -0.364 0.802 sum -13.957 -4.684 -0.775 14.743 Atomic orbital electron populations 1.21879 0.92547 1.03355 1.03258 1.21715 0.98231 0.90430 1.04310 1.21742 0.80807 0.99548 0.94781 1.22120 1.02063 0.99575 0.95982 1.20980 0.83550 0.76843 0.86193 1.90738 1.21582 1.54275 1.69367 1.44360 1.08098 1.57165 1.25198 1.16105 0.84019 0.79064 0.81824 1.91027 1.18486 1.60128 1.74392 1.47579 1.05813 1.59409 1.19794 1.20838 0.90784 0.93996 0.86760 1.19542 1.00190 0.96015 0.86689 1.21076 0.94422 0.99685 1.43612 0.96352 1.26243 0.95640 1.03986 0.94150 1.70808 1.39315 1.00834 1.45639 0.83351 0.75514 0.73785 0.76211 1.19990 1.22024 1.21248 1.22996 0.92932 1.00283 1.03674 1.22703 0.97261 0.99249 1.02295 0.90304 0.90753 0.92739 0.91660 0.88231 0.93673 0.88524 0.88672 0.72575 0.93595 0.88138 0.92382 0.91389 0.87210 0.88946 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.29 71.98 0.67 -1.89 16 2 C -0.11 -2.21 5.23 30.59 0.16 -2.05 16 3 C 0.12 3.25 0.86 2.99 0.00 3.26 16 4 C -0.14 -3.42 7.51 71.98 0.54 -2.88 16 5 C 0.54 15.99 7.27 87.94 0.64 16.63 16 6 O -0.49 -14.96 16.16 -2.86 -0.05 -15.00 16 7 N -0.68 -22.22 5.70 -441.12 -2.52 -24.73 16 8 C 0.69 28.45 7.99 179.44 1.43 29.88 16 9 O -0.57 -29.43 17.00 -3.85 -0.07 -29.49 16 10 N -0.59 -21.13 2.35 -794.63 -1.87 -22.99 16 11 C 0.20 7.54 5.63 86.38 0.49 8.03 16 12 C -0.02 -1.00 1.17 -52.93 -0.06 -1.06 16 13 C -0.55 -29.68 7.16 25.60 0.18 -29.50 16 14 H 0.02 1.05 7.82 -2.91 -0.02 1.03 16 15 C 0.00 0.08 5.39 84.66 0.46 0.53 16 16 N -0.93 -55.64 13.47 21.45 0.29 -55.35 16 17 Si 1.08 54.24 29.91 68.60 2.05 56.29 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 20 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 21 C -0.16 -5.75 8.71 30.62 0.27 -5.49 16 22 C -0.18 -7.18 8.93 30.62 0.27 -6.90 16 23 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.07 1.08 6.57 -2.39 -0.02 1.06 16 25 H 0.05 1.11 6.17 -2.39 -0.01 1.10 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.71 7.43 -2.39 -0.02 1.70 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 1.92 6.74 -2.38 -0.02 1.90 16 30 H 0.09 2.06 5.58 -2.39 -0.01 2.05 16 31 H 0.43 12.24 8.96 -92.71 -0.83 11.41 16 32 H 0.05 2.09 7.46 -2.39 -0.02 2.07 16 33 H 0.10 2.92 7.33 -2.39 -0.02 2.90 16 34 H 0.27 15.51 6.12 -92.71 -0.57 14.94 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.11 2.99 6.20 -2.39 -0.01 2.97 16 37 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 38 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -70.63 306.29 3.35 -67.28 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.45 Total: 15.44 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 5.05 Total: 8.56 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -4.10 Total: -103.08 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -0.11 Total: -44.50 kcal Atomic # 14 Polarization: 54.24 SS G_CDS: 2.05 Total: 56.29 kcal Total: -70.63 3.35 -67.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088257281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.583 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds