Wall clock time and date at job start Mon Mar 30 2020 05:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 C 1.53003 * 110.65728 * 309.20195 * 3 2 1 5 5 C 1.51584 * 110.59994 * 72.11612 * 3 2 1 6 6 O 1.21235 * 127.15647 * 298.50956 * 5 3 2 7 7 N 1.34766 * 105.68545 * 118.52599 * 5 3 2 8 8 C 1.33798 * 111.64210 * 0.02562 * 7 5 3 9 9 O 1.21537 * 123.76922 * 179.97438 * 8 7 5 10 10 N 1.34523 * 112.45801 * 359.97438 * 8 7 5 11 11 C 1.46509 * 126.68891 * 179.73636 * 10 8 7 12 12 C 1.53000 * 109.47031 * 74.60973 * 11 10 8 13 13 C 1.50700 * 115.54867 * 182.33603 * 12 11 10 14 14 H 1.08000 * 119.99880 * 123.41864 * 13 12 11 15 15 C 1.37875 * 120.00186 * 303.41759 * 13 12 11 16 16 N 1.31512 * 120.00166 * 165.08577 * 15 13 12 17 17 Si 1.86805 * 119.99610 * 345.08705 * 15 13 12 18 18 H 1.48500 * 109.47088 * 84.79009 * 17 15 13 19 19 H 1.48507 * 109.46716 * 204.78425 * 17 15 13 20 20 H 1.48497 * 109.47296 * 324.78302 * 17 15 13 21 21 C 1.53005 * 117.49859 * 36.66660 * 12 11 10 22 22 C 1.53004 * 117.49785 * 328.00765 * 12 11 10 23 23 H 1.08991 * 109.47662 * 59.99775 * 1 2 3 24 24 H 1.09006 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46685 * 299.99871 * 1 2 3 26 26 H 1.08997 * 109.46931 * 240.00217 * 2 1 3 27 27 H 1.08995 * 109.47180 * 120.00297 * 2 1 3 28 28 H 1.09000 * 109.46948 * 297.08965 * 4 3 2 29 29 H 1.09004 * 109.46848 * 57.08691 * 4 3 2 30 30 H 1.08999 * 109.47475 * 177.08701 * 4 3 2 31 31 H 0.96992 * 124.18075 * 180.02562 * 7 5 3 32 32 H 1.09001 * 109.46766 * 194.60888 * 11 10 8 33 33 H 1.09002 * 109.46895 * 314.61156 * 11 10 8 34 34 H 0.96998 * 120.00136 * 185.00472 * 16 15 13 35 35 H 1.08997 * 117.49584 * 359.97438 * 21 12 11 36 36 H 1.08993 * 117.49851 * 145.02242 * 21 12 11 37 37 H 1.09004 * 117.49634 * 214.97742 * 22 12 11 38 38 H 1.08999 * 117.50215 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3668 2.2530 -1.1094 5 6 1.8069 2.0906 1.3504 6 8 0.7417 2.2826 1.8963 7 7 3.0302 2.4093 1.8175 8 6 3.9937 2.0568 0.9587 9 8 5.1781 2.2418 1.1589 10 7 3.5049 1.4746 -0.1513 11 6 4.2784 0.9759 -1.2912 12 6 4.9685 -0.3339 -0.9053 13 6 5.8499 -0.9412 -1.9662 14 1 6.8887 -1.1460 -1.7529 15 6 5.3303 -1.2354 -3.2089 16 7 6.1374 -1.4840 -4.2171 17 14 3.4798 -1.2808 -3.4605 18 1 2.9831 0.0924 -3.7303 19 1 3.1587 -2.1589 -4.6143 20 1 2.8268 -1.8121 -2.2373 21 6 4.2048 -1.2914 0.0118 22 6 5.3997 -0.5023 0.5530 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6310 1.8311 -2.0791 29 1 0.2850 2.2172 -0.9802 30 1 1.7046 3.2881 -1.0594 31 1 3.1922 2.8408 2.6709 32 1 3.6104 0.8000 -2.1344 33 1 5.0302 1.7140 -1.5710 34 1 5.7749 -1.6193 -5.1065 35 1 3.2109 -0.9878 0.3405 36 1 4.3402 -2.3604 -0.1518 37 1 6.3207 -1.0528 0.7451 38 1 5.1921 0.3202 1.2374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088257282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:16 Heat of formation + Delta-G solvation = 3.061159 kcal Electronic energy + Delta-G solvation = -22178.727310 eV Core-core repulsion = 19024.041939 eV Total energy + Delta-G solvation = -3154.685370 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.52432 -38.77360 -37.39735 -36.23529 -34.73436 -32.75176 -32.20470 -29.26810 -27.69032 -25.62208 -25.15972 -23.53666 -21.51340 -21.12319 -20.16989 -18.84372 -18.04095 -16.96233 -16.30483 -16.15298 -15.76829 -15.36084 -15.03851 -14.75724 -14.28263 -13.70718 -13.40749 -13.14584 -12.92633 -12.75757 -12.48707 -12.15571 -12.08039 -11.76912 -11.74820 -11.23130 -10.94652 -10.82547 -10.60893 -10.40322 -10.16948 -9.92871 -9.86530 -9.70867 -9.16481 -8.71618 -8.49660 -8.32998 -6.21455 -4.18354 1.65094 2.46278 3.05140 3.11387 3.21133 3.25593 3.28515 4.02124 4.26180 4.50610 4.63598 4.82135 5.11298 5.18819 5.26137 5.33045 5.42220 5.57142 5.70949 5.83432 5.84818 5.93358 6.00783 6.02176 6.07952 6.15982 6.26241 6.36811 6.50013 6.58097 6.67779 6.95669 7.08854 7.23468 7.32771 7.44085 7.67430 8.32964 8.46631 8.85233 9.39890 10.88963 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022196 B = 0.009182 C = 0.007563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.157389 B = 3048.867330 C = 3701.105263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.128 4.128 3 C 0.115 3.885 4 C -0.150 4.150 5 C 0.536 3.464 6 O -0.474 6.474 7 N -0.683 5.683 8 C 0.696 3.304 9 O -0.531 6.531 10 N -0.604 5.604 11 C 0.173 3.827 12 C -0.011 4.011 13 C -0.483 4.483 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.888 5.888 17 Si 0.865 3.135 18 H -0.274 1.274 19 H -0.291 1.291 20 H -0.250 1.250 21 C -0.226 4.226 22 C -0.185 4.185 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.427 0.573 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.267 0.733 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 6.073 7.118 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.165 4.165 3 C 0.025 3.975 4 C -0.208 4.208 5 C 0.322 3.678 6 O -0.345 6.345 7 N -0.353 5.353 8 C 0.397 3.603 9 O -0.405 6.405 10 N -0.342 5.342 11 C 0.054 3.946 12 C -0.013 4.013 13 C -0.520 4.520 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.524 5.524 17 Si 0.694 3.306 18 H -0.201 1.201 19 H -0.217 1.217 20 H -0.174 1.174 21 C -0.263 4.263 22 C -0.222 4.222 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.268 0.732 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.974 6.050 7.080 15.169 hybrid contribution -0.705 0.045 0.138 0.720 sum -12.679 6.095 7.217 15.811 Atomic orbital electron populations 1.21964 0.94144 1.02515 1.03083 1.22142 0.96951 0.92448 1.04997 1.21546 0.83326 0.98448 0.94138 1.22071 1.01450 0.99656 0.97576 1.20793 0.83365 0.76543 0.87132 1.90764 1.26827 1.52561 1.64318 1.44443 1.08773 1.59013 1.23078 1.15875 0.84742 0.78799 0.80875 1.91015 1.13087 1.59000 1.77395 1.48254 1.05141 1.61110 1.19715 1.21636 0.93149 0.96282 0.83549 1.19703 0.98409 0.92131 0.91049 1.20264 0.96775 1.40297 0.94694 0.90316 1.24998 0.97647 0.94254 0.95671 1.69893 1.35109 1.47486 0.99900 0.87156 0.86965 0.77963 0.78556 1.20090 1.21712 1.17418 1.23727 0.95763 0.98277 1.08555 1.23082 0.98132 1.02631 0.98339 0.91897 0.91928 0.91264 0.88605 0.89941 0.90135 0.89586 0.91518 0.73151 0.89944 0.89423 0.92302 0.89680 0.90164 0.90490 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.19 37.16 0.34 -1.45 16 2 C -0.13 -1.76 3.50 -26.73 -0.09 -1.86 16 3 C 0.11 1.61 0.87 -132.09 -0.11 1.50 16 4 C -0.15 -1.78 8.28 37.16 0.31 -1.47 16 5 C 0.54 7.30 7.31 -10.56 -0.08 7.22 16 6 O -0.47 -6.89 16.49 5.60 0.09 -6.80 16 7 N -0.68 -9.14 5.70 -15.79 -0.09 -9.23 16 8 C 0.70 11.76 6.94 -88.02 -0.61 11.15 16 9 O -0.53 -10.68 15.68 5.33 0.08 -10.60 16 10 N -0.60 -10.16 1.79 -165.08 -0.30 -10.46 16 11 C 0.17 3.43 5.39 -4.04 -0.02 3.41 16 12 C -0.01 -0.25 1.40 -155.66 -0.22 -0.47 16 13 C -0.48 -13.01 9.39 -34.44 -0.32 -13.34 16 14 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 15 C 0.08 2.10 5.41 -17.82 -0.10 2.00 16 16 N -0.89 -25.72 13.95 55.43 0.77 -24.95 16 17 Si 0.87 19.35 24.75 -169.99 -4.21 15.15 16 18 H -0.27 -5.65 6.35 56.52 0.36 -5.29 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.25 -5.23 5.41 56.52 0.31 -4.92 16 21 C -0.23 -4.64 7.96 -26.69 -0.21 -4.85 16 22 C -0.18 -3.99 9.31 -26.69 -0.25 -4.23 16 23 H 0.06 0.63 6.35 -51.93 -0.33 0.30 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.80 6.51 -51.93 -0.34 0.46 16 26 H 0.10 1.50 5.60 -51.93 -0.29 1.21 16 27 H 0.08 1.17 6.36 -51.93 -0.33 0.84 16 28 H 0.08 0.99 7.53 -51.93 -0.39 0.60 16 29 H 0.09 0.87 6.26 -51.93 -0.33 0.54 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.43 4.57 8.96 -40.82 -0.37 4.20 16 32 H 0.08 1.61 3.70 -51.93 -0.19 1.42 16 33 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.27 7.23 8.32 -40.82 -0.34 6.89 16 35 H 0.09 1.54 2.72 -51.93 -0.14 1.40 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 38 H 0.09 1.86 3.90 -51.93 -0.20 1.66 16 LS Contribution 287.16 15.07 4.33 4.33 Total: -1.00 -30.07 287.16 -5.40 -35.47 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.72 Total: 9.49 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.37 Total: -2.39 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.39 Total: -44.64 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.18 Total: -17.39 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.21 Total: 15.15 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.07 -5.40 -35.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088257282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.527 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds