Wall clock time and date at job start Mon Mar 30 2020 05:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 C 1.53003 * 110.65728 * 309.20195 * 3 2 1 5 5 C 1.51584 * 110.59994 * 72.11612 * 3 2 1 6 6 O 1.21235 * 127.15647 * 298.50956 * 5 3 2 7 7 N 1.34766 * 105.68545 * 118.52599 * 5 3 2 8 8 C 1.33798 * 111.64210 * 0.02562 * 7 5 3 9 9 O 1.21537 * 123.76922 * 179.97438 * 8 7 5 10 10 N 1.34523 * 112.45801 * 359.97438 * 8 7 5 11 11 C 1.46509 * 126.68891 * 179.73636 * 10 8 7 12 12 C 1.53000 * 109.47031 * 74.60973 * 11 10 8 13 13 C 1.50700 * 115.54867 * 182.33603 * 12 11 10 14 14 H 1.08000 * 119.99880 * 123.41864 * 13 12 11 15 15 C 1.37875 * 120.00186 * 303.41759 * 13 12 11 16 16 N 1.31512 * 120.00166 * 165.08577 * 15 13 12 17 17 Si 1.86805 * 119.99610 * 345.08705 * 15 13 12 18 18 H 1.48500 * 109.47088 * 84.79009 * 17 15 13 19 19 H 1.48507 * 109.46716 * 204.78425 * 17 15 13 20 20 H 1.48497 * 109.47296 * 324.78302 * 17 15 13 21 21 C 1.53005 * 117.49859 * 36.66660 * 12 11 10 22 22 C 1.53004 * 117.49785 * 328.00765 * 12 11 10 23 23 H 1.08991 * 109.47662 * 59.99775 * 1 2 3 24 24 H 1.09006 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46685 * 299.99871 * 1 2 3 26 26 H 1.08997 * 109.46931 * 240.00217 * 2 1 3 27 27 H 1.08995 * 109.47180 * 120.00297 * 2 1 3 28 28 H 1.09000 * 109.46948 * 297.08965 * 4 3 2 29 29 H 1.09004 * 109.46848 * 57.08691 * 4 3 2 30 30 H 1.08999 * 109.47475 * 177.08701 * 4 3 2 31 31 H 0.96992 * 124.18075 * 180.02562 * 7 5 3 32 32 H 1.09001 * 109.46766 * 194.60888 * 11 10 8 33 33 H 1.09002 * 109.46895 * 314.61156 * 11 10 8 34 34 H 0.96998 * 120.00136 * 185.00472 * 16 15 13 35 35 H 1.08997 * 117.49584 * 359.97438 * 21 12 11 36 36 H 1.08993 * 117.49851 * 145.02242 * 21 12 11 37 37 H 1.09004 * 117.49634 * 214.97742 * 22 12 11 38 38 H 1.08999 * 117.50215 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3668 2.2530 -1.1094 5 6 1.8069 2.0906 1.3504 6 8 0.7417 2.2826 1.8963 7 7 3.0302 2.4093 1.8175 8 6 3.9937 2.0568 0.9587 9 8 5.1781 2.2418 1.1589 10 7 3.5049 1.4746 -0.1513 11 6 4.2784 0.9759 -1.2912 12 6 4.9685 -0.3339 -0.9053 13 6 5.8499 -0.9412 -1.9662 14 1 6.8887 -1.1460 -1.7529 15 6 5.3303 -1.2354 -3.2089 16 7 6.1374 -1.4840 -4.2171 17 14 3.4798 -1.2808 -3.4605 18 1 2.9831 0.0924 -3.7303 19 1 3.1587 -2.1589 -4.6143 20 1 2.8268 -1.8121 -2.2373 21 6 4.2048 -1.2914 0.0118 22 6 5.3997 -0.5023 0.5530 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6310 1.8311 -2.0791 29 1 0.2850 2.2172 -0.9802 30 1 1.7046 3.2881 -1.0594 31 1 3.1922 2.8408 2.6709 32 1 3.6104 0.8000 -2.1344 33 1 5.0302 1.7140 -1.5710 34 1 5.7749 -1.6193 -5.1065 35 1 3.2109 -0.9878 0.3405 36 1 4.3402 -2.3604 -0.1518 37 1 6.3207 -1.0528 0.7451 38 1 5.1921 0.3202 1.2374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088257282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:15 Heat of formation + Delta-G solvation = -18.365227 kcal Electronic energy + Delta-G solvation = -22179.656427 eV Core-core repulsion = 19024.041939 eV Total energy + Delta-G solvation = -3155.614488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.75219 -40.05885 -38.90535 -37.59146 -35.96518 -34.34860 -33.92963 -30.27235 -29.27328 -27.34760 -26.38677 -24.68745 -23.01601 -22.65129 -21.34307 -20.61527 -19.23557 -18.62575 -17.78491 -17.41306 -17.04455 -16.87824 -16.39950 -15.97563 -15.82261 -14.91255 -14.83502 -14.59172 -14.45775 -14.26035 -13.76863 -13.53653 -13.06247 -12.94143 -12.89010 -12.74295 -12.51416 -12.22314 -12.12173 -11.93993 -11.64267 -11.48126 -11.27549 -11.06238 -10.95065 -10.60057 -10.22610 -9.93596 -8.29338 -6.34035 0.50522 1.19091 1.29491 1.44611 1.55781 1.92324 1.94291 2.35929 2.88170 2.90889 3.32429 3.48392 3.62616 3.91875 4.11111 4.18723 4.30503 4.34998 4.50057 4.54395 4.62712 4.70128 4.76151 4.90848 4.91320 4.98307 5.03932 5.05176 5.08602 5.17175 5.27768 5.41137 5.47047 5.51283 5.70358 6.02993 6.29687 6.34201 6.68315 7.06181 7.28976 8.85111 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022196 B = 0.009182 C = 0.007563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.157389 B = 3048.867330 C = 3701.105263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C 0.110 3.890 4 C -0.150 4.150 5 C 0.546 3.454 6 O -0.475 6.475 7 N -0.669 5.669 8 C 0.697 3.303 9 O -0.569 6.569 10 N -0.607 5.607 11 C 0.186 3.814 12 C -0.026 4.026 13 C -0.499 4.499 14 H 0.022 0.978 15 C 0.023 3.977 16 N -0.941 5.941 17 Si 0.928 3.072 18 H -0.238 1.238 19 H -0.298 1.298 20 H -0.224 1.224 21 C -0.203 4.203 22 C -0.190 4.190 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.440 0.560 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.270 0.730 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.149 6.910 7.800 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.022 3.978 4 C -0.208 4.208 5 C 0.332 3.668 6 O -0.345 6.345 7 N -0.339 5.339 8 C 0.399 3.601 9 O -0.445 6.445 10 N -0.344 5.344 11 C 0.066 3.934 12 C -0.028 4.028 13 C -0.537 4.537 14 H 0.040 0.960 15 C -0.176 4.176 16 N -0.579 5.579 17 Si 0.751 3.249 18 H -0.163 1.163 19 H -0.225 1.225 20 H -0.146 1.146 21 C -0.239 4.239 22 C -0.227 4.227 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.284 0.716 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.017 6.914 7.818 19.117 hybrid contribution 0.662 -0.226 -0.016 0.700 sum -15.356 6.688 7.802 18.477 Atomic orbital electron populations 1.21939 0.91766 1.03595 1.03782 1.22153 0.99028 0.91724 1.04035 1.21850 0.81282 0.99435 0.95241 1.22153 1.02675 0.99505 0.96474 1.20629 0.83076 0.76249 0.86807 1.90786 1.26757 1.52700 1.64297 1.44219 1.08012 1.58614 1.23099 1.15956 0.84578 0.78434 0.81150 1.90998 1.14900 1.60420 1.78195 1.48064 1.06607 1.60769 1.18938 1.21140 0.93288 0.94314 0.84668 1.19599 0.99227 0.93909 0.90031 1.20342 0.95209 1.41442 0.96705 0.95961 1.25928 1.03671 0.93246 0.94744 1.70058 1.38005 1.49205 1.00644 0.86160 0.79719 0.79889 0.79156 1.16268 1.22465 1.14637 1.23764 0.96739 0.97280 1.06143 1.23068 0.98198 1.03226 0.98201 0.90262 0.90786 0.91461 0.89820 0.90457 0.90065 0.87234 0.90966 0.71595 0.88904 0.91003 0.92132 0.86451 0.91101 0.92375 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.19 71.98 0.66 -2.01 16 2 C -0.13 -3.05 3.50 30.59 0.11 -2.95 16 3 C 0.11 2.66 0.87 2.99 0.00 2.66 16 4 C -0.15 -2.88 8.28 71.98 0.60 -2.28 16 5 C 0.55 12.83 7.31 87.94 0.64 13.47 16 6 O -0.48 -11.83 16.49 -2.89 -0.05 -11.88 16 7 N -0.67 -16.05 5.70 -441.12 -2.52 -18.56 16 8 C 0.70 22.30 6.94 179.44 1.25 23.54 16 9 O -0.57 -22.56 15.68 -3.83 -0.06 -22.62 16 10 N -0.61 -18.94 1.79 -794.62 -1.42 -20.37 16 11 C 0.19 7.15 5.39 86.38 0.47 7.61 16 12 C -0.03 -1.16 1.40 -52.92 -0.07 -1.24 16 13 C -0.50 -28.08 9.39 25.60 0.24 -27.84 16 14 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 15 C 0.02 1.26 5.41 84.65 0.46 1.72 16 16 N -0.94 -56.58 13.95 21.45 0.30 -56.28 16 17 Si 0.93 38.67 24.75 68.60 1.70 40.36 16 18 H -0.24 -8.54 6.35 99.48 0.63 -7.91 16 19 H -0.30 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.22 -8.29 5.41 99.48 0.54 -7.75 16 21 C -0.20 -8.01 7.96 30.62 0.24 -7.77 16 22 C -0.19 -8.26 9.31 30.62 0.29 -7.97 16 23 H 0.08 1.14 6.35 -2.39 -0.02 1.12 16 24 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.07 1.22 6.51 -2.38 -0.02 1.21 16 26 H 0.08 2.20 5.60 -2.39 -0.01 2.19 16 27 H 0.08 1.86 6.36 -2.39 -0.02 1.85 16 28 H 0.08 1.59 7.53 -2.39 -0.02 1.57 16 29 H 0.11 1.60 6.26 -2.39 -0.01 1.59 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.44 8.26 8.96 -92.71 -0.83 7.43 16 32 H 0.09 3.34 3.70 -2.39 -0.01 3.33 16 33 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.27 15.04 8.32 -92.71 -0.77 14.27 16 35 H 0.12 3.89 2.72 -2.39 -0.01 3.89 16 36 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.06 2.70 8.14 -2.38 -0.02 2.68 16 38 H 0.10 4.13 3.90 -2.39 -0.01 4.12 16 Total: -1.00 -68.02 287.16 2.86 -65.16 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.04 Total: 27.23 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 4.87 Total: -3.05 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -3.64 Total: -95.21 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.11 Total: -34.50 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.70 Total: 40.36 kcal Total: -68.02 2.86 -65.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088257282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.793 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds