Wall clock time and date at job start Mon Mar 30 2020 05:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46635 * 2 1 4 4 C 1.52997 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47261 * 54.99964 * 4 3 2 6 6 O 1.42905 * 109.47264 * 294.99875 * 4 3 2 7 7 C 1.50699 * 109.47078 * 174.99999 * 4 3 2 8 8 C 1.40891 * 126.29049 * 84.68844 * 7 4 3 9 9 C 1.34854 * 107.41228 * 179.83042 * 8 7 4 10 10 N 1.36340 * 108.21988 * 0.43022 * 9 8 7 11 11 C 1.46500 * 125.63357 * 179.68400 * 10 9 8 12 12 C 1.50695 * 109.47432 * 270.04612 * 11 10 9 13 13 O 1.21288 * 120.00049 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99630 * 180.02562 * 12 11 10 15 15 C 1.37100 * 119.99530 * 179.97438 * 14 12 11 16 16 H 1.08001 * 119.99992 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00005 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99738 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00071 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46693 * 60.00076 * 19 17 15 21 21 H 1.48502 * 109.47084 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47326 * 300.00233 * 19 17 15 23 23 C 1.34851 * 126.28886 * 264.99585 * 7 4 3 24 24 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47300 * 299.99757 * 1 2 3 26 26 H 1.09000 * 109.47679 * 59.99939 * 1 2 3 27 27 H 1.08998 * 109.46991 * 240.00270 * 2 1 3 28 28 H 1.09000 * 109.47229 * 119.99774 * 2 1 3 29 29 H 1.08998 * 109.47211 * 60.00404 * 3 2 1 30 30 H 1.09000 * 109.47128 * 299.99836 * 3 2 1 31 31 H 0.96702 * 113.99404 * 300.00214 * 6 4 3 32 32 H 1.07998 * 126.29194 * 359.96434 * 8 7 4 33 33 H 1.08009 * 125.88460 * 180.15467 * 9 8 7 34 34 H 1.09002 * 109.47284 * 30.05073 * 11 10 9 35 35 H 1.09004 * 109.46673 * 150.03975 * 11 10 9 36 36 H 0.96992 * 120.00426 * 359.97438 * 14 12 11 37 37 H 0.96997 * 119.99792 * 180.02562 * 18 17 15 38 38 H 1.08002 * 125.89256 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9329 0.8533 -0.8427 6 8 4.0468 0.8731 1.2202 7 6 4.0721 2.8581 -0.1245 8 6 4.2514 3.7746 0.9304 9 6 4.7181 4.9207 0.3944 10 7 4.8244 4.7484 -0.9539 11 6 5.2881 5.7575 -1.9094 12 6 4.1124 6.5625 -2.4000 13 8 2.9968 6.3172 -1.9921 14 7 4.3005 7.5544 -3.2929 15 6 3.2309 8.2865 -3.7396 16 1 2.2375 8.0680 -3.3763 17 6 3.4246 9.3088 -4.6605 18 7 4.6331 9.5736 -5.1036 19 14 1.9671 10.3057 -5.2697 20 1 1.3122 10.9785 -4.1193 21 1 2.4371 11.3283 -6.2386 22 1 0.9935 9.4033 -5.9351 23 6 4.4270 3.4820 -1.2661 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7617 1.3475 2.0131 32 1 4.0536 3.5921 1.9764 33 1 4.9611 5.8213 0.9388 34 1 6.0030 6.4193 -1.4206 35 1 5.7686 5.2640 -2.7542 36 1 5.1926 7.7504 -3.6194 37 1 4.7684 10.2874 -5.7462 38 1 4.4014 3.0526 -2.2567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091820037.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:30 Heat of formation + Delta-G solvation = -53.915143 kcal Electronic energy + Delta-G solvation = -19662.567256 eV Core-core repulsion = 16505.411208 eV Total energy + Delta-G solvation = -3157.156048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95395 -38.25798 -37.39153 -34.15055 -34.05762 -32.45014 -31.35882 -29.72655 -27.90400 -26.83842 -24.62816 -23.26203 -21.16268 -20.36217 -19.37724 -19.36213 -18.14850 -17.05892 -16.33058 -15.71803 -15.58092 -14.72600 -14.55922 -14.19415 -13.98058 -13.81817 -13.46890 -13.31719 -13.19482 -12.46883 -12.29081 -12.04247 -11.82963 -11.71666 -11.64599 -11.54181 -11.34644 -11.12292 -10.70295 -10.61174 -10.54337 -10.35637 -9.86899 -9.66188 -8.83735 -8.14668 -8.00499 -7.69701 -6.56653 -3.98569 2.62695 3.09939 3.18053 3.21386 3.26120 3.33230 3.65025 4.07214 4.65195 4.79836 4.86299 5.01144 5.03716 5.12657 5.29763 5.36820 5.37844 5.46713 5.51808 5.61674 5.66904 5.79338 5.87554 5.92848 5.96601 6.05157 6.11321 6.27239 6.38619 6.49681 6.73910 7.32475 7.41163 7.58568 7.69432 7.80248 7.89133 8.41548 9.00898 9.32786 9.82763 10.60167 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.003798 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.819608 B = 7371.091433 C = 8158.378161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.144 4.144 4 C 0.186 3.814 5 H 0.094 0.906 6 O -0.561 6.561 7 C -0.210 4.210 8 C -0.198 4.198 9 C 0.002 3.998 10 N -0.416 5.416 11 C 0.091 3.909 12 C 0.417 3.583 13 O -0.577 6.577 14 N -0.553 5.553 15 C -0.304 4.304 16 H 0.104 0.896 17 C 0.026 3.974 18 N -0.898 5.898 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.012 3.988 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.371 0.629 32 H 0.128 0.872 33 H 0.155 0.845 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.394 0.606 37 H 0.275 0.725 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 -12.394 7.979 14.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.182 4.182 4 C 0.126 3.874 5 H 0.112 0.888 6 O -0.366 6.366 7 C -0.217 4.217 8 C -0.223 4.223 9 C -0.128 4.128 10 N -0.089 5.089 11 C -0.035 4.035 12 C 0.201 3.799 13 O -0.461 6.461 14 N -0.190 5.190 15 C -0.434 4.434 16 H 0.121 0.879 17 C -0.176 4.176 18 N -0.538 5.538 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.119 4.119 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.218 0.782 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.227 0.773 37 H 0.085 0.915 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.516 -12.554 7.435 14.600 hybrid contribution -0.426 1.373 -0.340 1.477 sum 0.090 -11.181 7.096 13.243 Atomic orbital electron populations 1.21789 0.96239 1.01171 1.01846 1.21490 0.95344 0.96880 1.02134 1.22300 0.95971 0.96686 1.03265 1.20043 0.91482 0.88903 0.86937 0.88771 1.86509 1.77507 1.56718 1.15841 1.19928 1.10856 0.97309 0.93600 1.20408 1.09877 0.93828 0.98164 1.21663 1.08204 1.00136 0.82844 1.43503 1.49085 1.10129 1.06196 1.21642 0.97125 0.91254 0.93488 1.20002 0.90025 0.84825 0.85055 1.90597 1.24623 1.70317 1.60601 1.41821 1.10862 1.28944 1.37328 1.19672 0.89677 1.11781 1.22227 0.87860 1.25301 0.97966 0.97672 0.96695 1.69594 1.20832 1.31766 1.31612 0.85878 0.80500 0.79039 0.78627 1.19755 1.20793 1.19748 1.21405 1.06451 0.85153 0.98930 0.93086 0.92902 0.92770 0.92296 0.91645 0.91710 0.90901 0.78204 0.85419 0.82738 0.87821 0.87858 0.77283 0.91547 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.26 5.83 -26.73 -0.16 -1.42 16 3 C -0.14 -1.74 4.88 -26.73 -0.13 -1.87 16 4 C 0.19 2.40 3.43 -27.88 -0.10 2.31 16 5 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 6 O -0.56 -7.05 12.77 -35.23 -0.45 -7.50 16 7 C -0.21 -3.22 5.18 -104.82 -0.54 -3.76 16 8 C -0.20 -3.02 10.25 -39.78 -0.41 -3.43 16 9 C 0.00 0.03 11.43 -16.75 -0.19 -0.16 16 10 N -0.42 -7.15 2.24 -118.41 -0.26 -7.41 16 11 C 0.09 1.51 6.57 -5.20 -0.03 1.48 16 12 C 0.42 9.45 7.85 -10.99 -0.09 9.36 16 13 O -0.58 -15.58 16.01 5.55 0.09 -15.49 16 14 N -0.55 -13.38 5.29 -10.96 -0.06 -13.43 16 15 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 16 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 18 N -0.90 -23.54 13.05 55.50 0.72 -22.81 16 19 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 C 0.01 0.20 11.35 -16.75 -0.19 0.01 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.68 7.82 -51.93 -0.41 0.27 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.37 3.64 8.30 45.56 0.38 4.02 16 32 H 0.13 1.61 7.71 -52.49 -0.40 1.21 16 33 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 34 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.39 8.93 7.90 -40.82 -0.32 8.60 16 37 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.15 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -31.81 328.67 -6.65 -38.47 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -4.92 Total: 14.15 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.71 Total: -6.39 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.40 Total: -43.66 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.36 Total: -22.99 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.81 -6.65 -38.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091820037.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.450 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds