Wall clock time and date at job start Mon Mar 30 2020 05:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46635 * 2 1 4 4 C 1.52997 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47261 * 54.99964 * 4 3 2 6 6 O 1.42905 * 109.47264 * 294.99875 * 4 3 2 7 7 C 1.50699 * 109.47078 * 174.99999 * 4 3 2 8 8 C 1.40891 * 126.29049 * 84.68844 * 7 4 3 9 9 C 1.34854 * 107.41228 * 179.83042 * 8 7 4 10 10 N 1.36340 * 108.21988 * 0.43022 * 9 8 7 11 11 C 1.46500 * 125.63357 * 179.68400 * 10 9 8 12 12 C 1.50695 * 109.47432 * 270.04612 * 11 10 9 13 13 O 1.21288 * 120.00049 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99630 * 180.02562 * 12 11 10 15 15 C 1.37100 * 119.99530 * 179.97438 * 14 12 11 16 16 H 1.08001 * 119.99992 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00005 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99738 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00071 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46693 * 60.00076 * 19 17 15 21 21 H 1.48502 * 109.47084 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47326 * 300.00233 * 19 17 15 23 23 C 1.34851 * 126.28886 * 264.99585 * 7 4 3 24 24 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47300 * 299.99757 * 1 2 3 26 26 H 1.09000 * 109.47679 * 59.99939 * 1 2 3 27 27 H 1.08998 * 109.46991 * 240.00270 * 2 1 3 28 28 H 1.09000 * 109.47229 * 119.99774 * 2 1 3 29 29 H 1.08998 * 109.47211 * 60.00404 * 3 2 1 30 30 H 1.09000 * 109.47128 * 299.99836 * 3 2 1 31 31 H 0.96702 * 113.99404 * 300.00214 * 6 4 3 32 32 H 1.07998 * 126.29194 * 359.96434 * 8 7 4 33 33 H 1.08009 * 125.88460 * 180.15467 * 9 8 7 34 34 H 1.09002 * 109.47284 * 30.05073 * 11 10 9 35 35 H 1.09004 * 109.46673 * 150.03975 * 11 10 9 36 36 H 0.96992 * 120.00426 * 359.97438 * 14 12 11 37 37 H 0.96997 * 119.99792 * 180.02562 * 18 17 15 38 38 H 1.08002 * 125.89256 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9329 0.8533 -0.8427 6 8 4.0468 0.8731 1.2202 7 6 4.0721 2.8581 -0.1245 8 6 4.2514 3.7746 0.9304 9 6 4.7181 4.9207 0.3944 10 7 4.8244 4.7484 -0.9539 11 6 5.2881 5.7575 -1.9094 12 6 4.1124 6.5625 -2.4000 13 8 2.9968 6.3172 -1.9921 14 7 4.3005 7.5544 -3.2929 15 6 3.2309 8.2865 -3.7396 16 1 2.2375 8.0680 -3.3763 17 6 3.4246 9.3088 -4.6605 18 7 4.6331 9.5736 -5.1036 19 14 1.9671 10.3057 -5.2697 20 1 1.3122 10.9785 -4.1193 21 1 2.4371 11.3283 -6.2386 22 1 0.9935 9.4033 -5.9351 23 6 4.4270 3.4820 -1.2661 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7617 1.3475 2.0131 32 1 4.0536 3.5921 1.9764 33 1 4.9611 5.8213 0.9388 34 1 6.0030 6.4193 -1.4206 35 1 5.7686 5.2640 -2.7542 36 1 5.1926 7.7504 -3.6194 37 1 4.7684 10.2874 -5.7462 38 1 4.4014 3.0526 -2.2567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091820037.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:30 Heat of formation + Delta-G solvation = -75.103613 kcal Electronic energy + Delta-G solvation = -19663.486057 eV Core-core repulsion = 16505.411208 eV Total energy + Delta-G solvation = -3158.074849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.19300 -40.01554 -38.47733 -36.09511 -34.94987 -33.84919 -33.23696 -30.82746 -29.13444 -28.18015 -26.36943 -24.32229 -22.09622 -21.84082 -20.87165 -20.53593 -20.03752 -18.29652 -18.06689 -16.87745 -16.58849 -16.52549 -16.00698 -15.77589 -15.24367 -15.09275 -14.80204 -14.59044 -14.21033 -13.82983 -13.64309 -13.53193 -13.24287 -13.01314 -12.85407 -12.64214 -12.58675 -12.51192 -12.29899 -12.16297 -11.66698 -11.59537 -11.48940 -10.88539 -10.63186 -10.11706 -9.32541 -8.92145 -8.54157 -6.04167 1.32667 1.34576 1.40559 1.50485 1.89198 2.04624 2.10390 2.27924 3.11377 3.14377 3.69802 3.86649 4.03191 4.12753 4.12985 4.23064 4.24171 4.30713 4.31648 4.51407 4.57197 4.72208 4.80184 4.94322 5.01086 5.08183 5.26894 5.31013 5.33902 5.35542 5.51325 5.60825 5.87427 6.13620 6.37734 6.42817 6.55282 6.92202 7.02975 7.42109 7.96954 8.61864 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.003798 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.819608 B = 7371.091433 C = 8158.378161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.138 4.138 4 C 0.191 3.809 5 H 0.098 0.902 6 O -0.566 6.566 7 C -0.211 4.211 8 C -0.203 4.203 9 C -0.020 4.020 10 N -0.428 5.428 11 C 0.102 3.898 12 C 0.418 3.582 13 O -0.625 6.625 14 N -0.560 5.560 15 C -0.339 4.339 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.914 5.914 19 Si 0.991 3.009 20 H -0.272 1.272 21 H -0.268 1.268 22 H -0.272 1.272 23 C -0.015 4.015 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.383 0.617 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.400 0.600 37 H 0.280 0.720 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 -12.918 8.336 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.176 4.176 4 C 0.132 3.868 5 H 0.116 0.884 6 O -0.372 6.372 7 C -0.218 4.218 8 C -0.227 4.227 9 C -0.149 4.149 10 N -0.102 5.102 11 C -0.023 4.023 12 C 0.204 3.796 13 O -0.512 6.512 14 N -0.197 5.197 15 C -0.468 4.468 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.554 5.554 19 Si 0.815 3.185 20 H -0.197 1.197 21 H -0.192 1.192 22 H -0.198 1.198 23 C -0.145 4.145 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.232 0.768 32 H 0.170 0.830 33 H 0.187 0.813 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.905 -13.083 7.801 15.259 hybrid contribution -0.536 1.480 -0.380 1.619 sum 0.369 -11.603 7.421 13.779 Atomic orbital electron populations 1.21788 0.95670 1.02001 1.01570 1.21451 0.95815 0.95588 1.02499 1.22216 0.95429 0.97703 1.02247 1.20005 0.91761 0.87660 0.87389 0.88444 1.86489 1.77625 1.56906 1.16209 1.20305 1.09829 0.98359 0.93339 1.20801 1.09012 0.93454 0.99420 1.22125 1.08675 1.01224 0.82917 1.43631 1.49831 1.10267 1.06482 1.21628 0.94562 0.91264 0.94863 1.21051 0.91157 0.83995 0.83382 1.90563 1.27305 1.71450 1.61851 1.41847 1.10506 1.29413 1.37970 1.19598 0.89638 1.13646 1.23934 0.90513 1.26017 1.00511 0.97965 0.96199 1.69642 1.21980 1.32088 1.31681 0.85012 0.77539 0.77771 0.78202 1.19743 1.19217 1.19759 1.21811 1.07264 0.85435 0.99994 0.91719 0.92796 0.93459 0.91989 0.91159 0.91872 0.92741 0.76798 0.83048 0.81340 0.84712 0.84901 0.76512 0.90999 0.81850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.91 71.98 0.71 -2.04 16 2 C -0.12 -2.25 5.83 30.60 0.18 -2.08 16 3 C -0.14 -3.22 4.88 30.60 0.15 -3.07 16 4 C 0.19 4.71 3.43 29.85 0.10 4.81 16 5 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 6 O -0.57 -13.12 12.77 -148.98 -1.90 -15.02 16 7 C -0.21 -6.25 5.18 -19.99 -0.10 -6.36 16 8 C -0.20 -5.89 10.25 22.14 0.23 -5.66 16 9 C -0.02 -0.62 11.43 83.21 0.95 0.33 16 10 N -0.43 -14.26 2.24 -528.54 -1.18 -15.44 16 11 C 0.10 3.26 6.57 85.63 0.56 3.82 16 12 C 0.42 19.00 7.85 87.66 0.69 19.69 16 13 O -0.62 -34.45 16.01 -3.05 -0.05 -34.50 16 14 N -0.56 -27.33 5.29 -306.98 -1.62 -28.95 16 15 C -0.34 -18.69 9.68 84.04 0.81 -17.87 16 16 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 17 C -0.01 -0.31 5.50 84.93 0.47 0.16 16 18 N -0.91 -47.40 13.05 21.66 0.28 -47.12 16 19 Si 0.99 41.74 29.55 68.60 2.03 43.77 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 C -0.01 -0.47 11.35 83.21 0.94 0.47 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.31 7.82 -2.39 -0.02 1.30 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.38 6.69 8.30 -74.06 -0.62 6.07 16 32 H 0.15 3.50 7.71 -2.91 -0.02 3.48 16 33 H 0.17 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 35 H 0.13 3.46 8.14 -2.38 -0.02 3.44 16 36 H 0.40 18.11 7.90 -92.71 -0.73 17.37 16 37 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 38 H 0.16 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -68.33 328.67 2.97 -65.36 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -0.28 Total: 39.70 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.69 Total: -7.79 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -2.52 Total: -91.51 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -1.95 Total: -49.52 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -68.33 2.97 -65.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091820037.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.746 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds