Wall clock time and date at job start Mon Mar 30 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46790 * 2 1 4 4 C 1.53001 * 109.47218 * 119.99826 * 2 1 3 5 5 H 1.09005 * 109.46684 * 185.00325 * 4 2 1 6 6 O 1.42891 * 109.47207 * 305.00129 * 4 2 1 7 7 C 1.50698 * 109.46882 * 65.00406 * 4 2 1 8 8 C 1.40884 * 126.29437 * 280.01890 * 7 4 2 9 9 C 1.34850 * 107.42192 * 179.97438 * 8 7 4 10 10 N 1.36338 * 108.21433 * 359.97438 * 9 8 7 11 11 C 1.46505 * 125.63413 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.47022 * 270.00147 * 11 10 9 13 13 O 1.21292 * 119.99559 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99835 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99746 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00414 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99967 * 180.02562 * 15 14 12 18 18 N 1.31407 * 119.99849 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99884 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46997 * 59.99904 * 19 17 15 21 21 H 1.48498 * 109.46667 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47042 * 299.99877 * 19 17 15 23 23 C 1.34854 * 126.29050 * 99.99831 * 7 4 2 24 24 H 1.09005 * 109.47434 * 299.99277 * 1 2 3 25 25 H 1.08992 * 109.47344 * 60.00231 * 1 2 3 26 26 H 1.09009 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47310 * 240.00054 * 2 1 3 28 28 H 1.08998 * 109.47174 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47060 * 300.00342 * 3 2 1 30 30 H 1.08997 * 109.47150 * 59.99957 * 3 2 1 31 31 H 0.96706 * 114.00233 * 60.00349 * 6 4 2 32 32 H 1.08004 * 126.28926 * 0.02562 * 8 7 4 33 33 H 1.08000 * 125.89256 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47333 * 30.00026 * 11 10 9 35 35 H 1.08997 * 109.47416 * 150.00207 * 11 10 9 36 36 H 0.97000 * 120.00313 * 359.97438 * 14 12 11 37 37 H 0.97002 * 120.00116 * 180.02562 * 18 17 15 38 38 H 1.08006 * 125.89018 * 359.75991 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1264 -0.6442 1.2951 6 8 1.4703 -0.1188 2.4130 7 6 1.6414 -2.1733 1.1889 8 6 0.3770 -2.7050 1.5104 9 6 0.4403 -4.0389 1.3223 10 7 1.6974 -4.3500 0.8959 11 6 2.1818 -5.6951 0.5762 12 6 2.7628 -6.3274 1.8147 13 8 2.7710 -5.7147 2.8615 14 7 3.2724 -7.5738 1.7594 15 6 3.8004 -8.1491 2.8862 16 1 3.8078 -7.6037 3.8183 17 6 4.3263 -9.4341 2.8290 18 7 4.3170 -10.0979 1.6950 19 14 5.0465 -10.2177 4.3642 20 1 3.9991 -10.3050 5.4133 21 1 5.5369 -11.5814 4.0402 22 1 6.1754 -9.3897 4.8595 23 6 2.4294 -3.2025 0.8167 24 1 -0.3634 0.5137 0.8901 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.5041 -0.1509 2.4396 32 1 -0.4849 -2.1469 1.8451 33 1 -0.3657 -4.7398 1.4819 34 1 1.3532 -6.3028 0.2127 35 1 2.9506 -5.6310 -0.1938 36 1 3.2648 -8.0641 0.9225 37 1 4.6837 -10.9950 1.6551 38 1 3.4608 -3.1296 0.5047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091825010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:38 Heat of formation + Delta-G solvation = -48.094946 kcal Electronic energy + Delta-G solvation = -19921.806140 eV Core-core repulsion = 16764.902474 eV Total energy + Delta-G solvation = -3156.903665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01568 -38.39109 -37.67868 -34.13126 -33.65673 -32.36257 -31.32622 -29.13323 -27.61597 -27.06129 -25.33641 -24.22788 -20.46870 -20.28826 -19.36143 -19.31047 -18.13754 -17.09825 -16.35561 -16.04363 -15.16609 -14.76766 -14.66159 -14.20676 -13.94825 -13.73187 -13.35481 -13.21518 -12.88121 -12.51652 -12.24320 -12.13091 -12.03758 -11.75458 -11.64058 -11.58277 -11.20138 -11.10902 -10.88851 -10.60725 -10.52805 -10.34138 -9.81318 -9.64561 -8.81654 -8.13065 -7.98864 -7.69418 -6.55237 -3.96989 2.62202 3.11481 3.19282 3.22991 3.26218 3.33938 3.66610 4.08689 4.68631 4.81041 4.85780 4.93663 4.99950 5.05444 5.33894 5.36986 5.43203 5.46955 5.54289 5.62884 5.68228 5.75767 5.83641 5.90119 5.99859 6.04116 6.06394 6.26961 6.29965 6.50778 6.74047 7.32879 7.42800 7.59494 7.70230 7.82866 7.90619 8.43228 9.02621 9.34339 9.84556 10.61611 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043503 B = 0.003523 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.477640 B = 7945.385429 C = 8110.738088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.144 4.144 4 C 0.188 3.812 5 H 0.095 0.905 6 O -0.557 6.557 7 C -0.207 4.207 8 C -0.197 4.197 9 C 0.001 3.999 10 N -0.416 5.416 11 C 0.091 3.909 12 C 0.416 3.584 13 O -0.576 6.576 14 N -0.554 5.554 15 C -0.304 4.304 16 H 0.104 0.896 17 C 0.026 3.974 18 N -0.898 5.898 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.013 3.987 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.369 0.631 32 H 0.128 0.872 33 H 0.155 0.845 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.393 0.607 37 H 0.274 0.726 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 13.894 -7.416 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.201 4.201 4 C 0.129 3.871 5 H 0.112 0.888 6 O -0.362 6.362 7 C -0.214 4.214 8 C -0.221 4.221 9 C -0.129 4.129 10 N -0.089 5.089 11 C -0.035 4.035 12 C 0.200 3.800 13 O -0.459 6.459 14 N -0.190 5.190 15 C -0.433 4.433 16 H 0.121 0.879 17 C -0.176 4.176 18 N -0.539 5.539 19 Si 0.759 3.241 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.119 4.119 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.217 0.783 32 H 0.146 0.854 33 H 0.172 0.828 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.227 0.773 37 H 0.084 0.916 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.742 13.846 -6.701 16.419 hybrid contribution -0.148 -1.139 0.025 1.149 sum -5.889 12.708 -6.676 15.516 Atomic orbital electron populations 1.21908 0.95253 1.02766 1.01172 1.21740 0.96625 0.96374 0.99181 1.21795 1.00796 0.96001 1.01554 1.20066 0.97089 0.86123 0.83842 0.88750 1.86541 1.25136 1.81029 1.43526 1.19875 0.95391 0.95049 1.11037 1.20411 0.97670 0.93388 1.10666 1.21663 0.87937 0.96523 1.06796 1.43496 1.09958 1.05552 1.49896 1.21637 1.01320 0.82292 0.98219 1.20013 0.86042 0.83937 0.89977 1.90613 1.61415 1.62921 1.30991 1.41816 1.52057 1.12523 1.12612 1.19679 1.35295 0.97955 0.90385 0.87850 1.25296 0.97410 0.96405 0.98523 1.69592 1.45685 1.13180 1.25415 0.85879 0.79444 0.77903 0.80833 1.19751 1.20813 1.19734 1.21414 0.97338 0.84449 1.08680 0.92933 0.93063 0.91184 0.90661 0.92914 0.93187 0.92206 0.78293 0.85421 0.82783 0.87856 0.87892 0.77307 0.91570 0.82863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.42 37.16 0.31 -1.14 16 2 C -0.12 -1.26 2.74 -90.62 -0.25 -1.51 16 3 C -0.14 -1.36 9.09 37.16 0.34 -1.02 16 4 C 0.19 2.45 3.18 -27.88 -0.09 2.36 16 5 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 6 O -0.56 -7.62 12.70 -35.23 -0.45 -8.06 16 7 C -0.21 -3.12 4.83 -104.82 -0.51 -3.63 16 8 C -0.20 -2.93 8.40 -39.78 -0.33 -3.26 16 9 C 0.00 0.02 11.43 -16.75 -0.19 -0.17 16 10 N -0.42 -7.08 2.23 -118.41 -0.26 -7.34 16 11 C 0.09 1.52 6.57 -5.19 -0.03 1.48 16 12 C 0.42 9.52 7.85 -10.98 -0.09 9.43 16 13 O -0.58 -15.79 16.01 5.55 0.09 -15.70 16 14 N -0.55 -13.47 5.29 -10.96 -0.06 -13.53 16 15 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 16 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 18 N -0.90 -23.66 13.05 55.50 0.72 -22.93 16 19 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 23 C 0.01 0.21 11.35 -16.75 -0.19 0.02 16 24 H 0.05 0.45 6.72 -51.93 -0.35 0.10 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.72 5.78 -51.92 -0.30 0.42 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 31 H 0.37 4.06 6.56 45.56 0.30 4.35 16 32 H 0.13 1.59 7.56 -52.48 -0.40 1.19 16 33 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.39 8.95 7.90 -40.82 -0.32 8.63 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.15 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 320.10 15.07 4.82 4.82 Total: -1.00 -32.20 320.10 -6.22 -38.42 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -4.79 Total: 13.98 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.27 Total: -5.29 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.40 Total: -43.80 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.36 Total: -23.77 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.20 -6.22 -38.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091825010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.675 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds