Wall clock time and date at job start Mon Mar 30 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46790 * 2 1 4 4 C 1.53001 * 109.47218 * 119.99826 * 2 1 3 5 5 H 1.09005 * 109.46684 * 185.00325 * 4 2 1 6 6 O 1.42891 * 109.47207 * 305.00129 * 4 2 1 7 7 C 1.50698 * 109.46882 * 65.00406 * 4 2 1 8 8 C 1.40884 * 126.29437 * 280.01890 * 7 4 2 9 9 C 1.34850 * 107.42192 * 179.97438 * 8 7 4 10 10 N 1.36338 * 108.21433 * 359.97438 * 9 8 7 11 11 C 1.46505 * 125.63413 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.47022 * 270.00147 * 11 10 9 13 13 O 1.21292 * 119.99559 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99835 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99746 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00414 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99967 * 180.02562 * 15 14 12 18 18 N 1.31407 * 119.99849 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99884 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46997 * 59.99904 * 19 17 15 21 21 H 1.48498 * 109.46667 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47042 * 299.99877 * 19 17 15 23 23 C 1.34854 * 126.29050 * 99.99831 * 7 4 2 24 24 H 1.09005 * 109.47434 * 299.99277 * 1 2 3 25 25 H 1.08992 * 109.47344 * 60.00231 * 1 2 3 26 26 H 1.09009 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47310 * 240.00054 * 2 1 3 28 28 H 1.08998 * 109.47174 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47060 * 300.00342 * 3 2 1 30 30 H 1.08997 * 109.47150 * 59.99957 * 3 2 1 31 31 H 0.96706 * 114.00233 * 60.00349 * 6 4 2 32 32 H 1.08004 * 126.28926 * 0.02562 * 8 7 4 33 33 H 1.08000 * 125.89256 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47333 * 30.00026 * 11 10 9 35 35 H 1.08997 * 109.47416 * 150.00207 * 11 10 9 36 36 H 0.97000 * 120.00313 * 359.97438 * 14 12 11 37 37 H 0.97002 * 120.00116 * 180.02562 * 18 17 15 38 38 H 1.08006 * 125.89018 * 359.75991 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1264 -0.6442 1.2951 6 8 1.4703 -0.1188 2.4130 7 6 1.6414 -2.1733 1.1889 8 6 0.3770 -2.7050 1.5104 9 6 0.4403 -4.0389 1.3223 10 7 1.6974 -4.3500 0.8959 11 6 2.1818 -5.6951 0.5762 12 6 2.7628 -6.3274 1.8147 13 8 2.7710 -5.7147 2.8615 14 7 3.2724 -7.5738 1.7594 15 6 3.8004 -8.1491 2.8862 16 1 3.8078 -7.6037 3.8183 17 6 4.3263 -9.4341 2.8290 18 7 4.3170 -10.0979 1.6950 19 14 5.0465 -10.2177 4.3642 20 1 3.9991 -10.3050 5.4133 21 1 5.5369 -11.5814 4.0402 22 1 6.1754 -9.3897 4.8595 23 6 2.4294 -3.2025 0.8167 24 1 -0.3634 0.5137 0.8901 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.5041 -0.1509 2.4396 32 1 -0.4849 -2.1469 1.8451 33 1 -0.3657 -4.7398 1.4819 34 1 1.3532 -6.3028 0.2127 35 1 2.9506 -5.6310 -0.1938 36 1 3.2648 -8.0641 0.9225 37 1 4.6837 -10.9950 1.6551 38 1 3.4608 -3.1296 0.5047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091825010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:38 Heat of formation + Delta-G solvation = -69.890503 kcal Electronic energy + Delta-G solvation = -19922.751266 eV Core-core repulsion = 16764.902474 eV Total energy + Delta-G solvation = -3157.848792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.23351 -40.06238 -38.85528 -36.09698 -34.57943 -33.78354 -33.19841 -30.28182 -28.93961 -27.92032 -26.83507 -25.67616 -21.90133 -21.29252 -20.87296 -20.41849 -20.03831 -18.33760 -18.07000 -17.09997 -16.63917 -16.19956 -16.01452 -15.81794 -15.24338 -15.19486 -14.67544 -14.44526 -13.91972 -13.68483 -13.58667 -13.50253 -13.25441 -12.98457 -12.85816 -12.80820 -12.68286 -12.51449 -12.16439 -12.08908 -11.68840 -11.59809 -11.51864 -10.83389 -10.61808 -10.11695 -9.29270 -8.90386 -8.54301 -6.04231 1.32888 1.34455 1.40330 1.50329 1.89456 2.07562 2.11265 2.27993 3.11217 3.14689 3.72290 3.89305 4.04278 4.10355 4.13963 4.20103 4.24400 4.31899 4.35013 4.60407 4.64737 4.84078 4.87669 4.93156 5.09551 5.15150 5.27136 5.31623 5.33844 5.47401 5.54489 5.63570 5.87473 6.15396 6.39367 6.43646 6.56198 6.90088 7.03135 7.42177 7.97548 8.61688 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043503 B = 0.003523 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.477640 B = 7945.385429 C = 8110.738088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.141 4.141 4 C 0.188 3.812 5 H 0.087 0.913 6 O -0.570 6.570 7 C -0.205 4.205 8 C -0.197 4.197 9 C -0.021 4.021 10 N -0.428 5.428 11 C 0.104 3.896 12 C 0.416 3.584 13 O -0.626 6.626 14 N -0.560 5.560 15 C -0.339 4.339 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.913 5.913 19 Si 0.991 3.009 20 H -0.272 1.272 21 H -0.267 1.267 22 H -0.273 1.273 23 C -0.016 4.016 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.380 0.620 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.401 0.599 37 H 0.281 0.719 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 14.321 -8.242 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.128 3.872 5 H 0.105 0.895 6 O -0.378 6.378 7 C -0.212 4.212 8 C -0.221 4.221 9 C -0.150 4.150 10 N -0.102 5.102 11 C -0.022 4.022 12 C 0.203 3.797 13 O -0.513 6.513 14 N -0.197 5.197 15 C -0.469 4.469 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.553 5.553 19 Si 0.814 3.186 20 H -0.198 1.198 21 H -0.191 1.191 22 H -0.198 1.198 23 C -0.146 4.146 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.230 0.770 32 H 0.168 0.832 33 H 0.186 0.814 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.305 14.272 -7.563 17.339 hybrid contribution -0.010 -1.197 0.288 1.231 sum -6.315 13.075 -7.276 16.241 Atomic orbital electron populations 1.21883 0.94300 1.02464 1.02190 1.21651 0.97376 0.96607 0.97559 1.21769 1.00782 0.95248 1.02040 1.20118 0.96850 0.85292 0.84892 0.89496 1.86515 1.26287 1.80966 1.44006 1.20209 0.95331 0.95900 1.09806 1.20749 0.98316 0.93251 1.09771 1.22123 0.88211 0.97541 1.07150 1.43607 1.10352 1.05524 1.50675 1.21618 1.03042 0.82360 0.95177 1.21109 0.84247 0.83004 0.91366 1.90577 1.62975 1.63995 1.33737 1.41840 1.52440 1.13281 1.12159 1.19592 1.37681 0.98935 0.90668 0.90627 1.26006 0.97086 0.96221 1.01326 1.69637 1.45604 1.13537 1.26562 0.85021 0.78519 0.77536 0.77501 1.19768 1.19131 1.19810 1.21800 0.98143 0.84884 1.09778 0.92084 0.91914 0.92082 0.90801 0.93001 0.91752 0.92609 0.77031 0.83188 0.81408 0.84648 0.84875 0.76483 0.90984 0.82031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.42 71.98 0.61 -1.93 16 2 C -0.11 -2.18 2.74 -10.79 -0.03 -2.21 16 3 C -0.14 -2.40 9.09 71.98 0.65 -1.75 16 4 C 0.19 4.71 3.18 29.85 0.10 4.80 16 5 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 6 O -0.57 -14.94 12.70 -148.98 -1.89 -16.83 16 7 C -0.21 -6.02 4.83 -19.99 -0.10 -6.12 16 8 C -0.20 -5.59 8.40 22.14 0.19 -5.40 16 9 C -0.02 -0.64 11.43 83.21 0.95 0.31 16 10 N -0.43 -14.12 2.23 -528.53 -1.18 -15.30 16 11 C 0.10 3.29 6.57 85.63 0.56 3.85 16 12 C 0.42 19.13 7.85 87.66 0.69 19.82 16 13 O -0.63 -35.15 16.01 -3.07 -0.05 -35.20 16 14 N -0.56 -27.51 5.29 -306.98 -1.62 -29.14 16 15 C -0.34 -18.90 9.68 84.04 0.81 -18.08 16 16 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 17 C -0.01 -0.28 5.50 84.93 0.47 0.18 16 18 N -0.91 -47.54 13.05 21.66 0.28 -47.26 16 19 Si 0.99 42.11 29.55 68.60 2.03 44.14 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 C -0.02 -0.50 11.35 83.21 0.94 0.44 16 24 H 0.06 0.91 6.72 -2.38 -0.02 0.89 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 1.14 5.78 -2.38 -0.01 1.13 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.05 1.00 7.82 -2.39 -0.02 0.98 16 31 H 0.38 7.74 6.56 -74.05 -0.49 7.25 16 32 H 0.15 3.43 7.56 -2.91 -0.02 3.41 16 33 H 0.17 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.14 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.40 18.18 7.90 -92.71 -0.73 17.44 16 37 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 38 H 0.16 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -69.58 320.10 3.27 -66.32 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -0.14 Total: 39.35 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 5.84 Total: -6.08 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -2.52 Total: -91.70 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -1.94 Total: -52.02 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -69.58 3.27 -66.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091825010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.575 kcal (2) G-P(sol) polarization free energy of solvation -69.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds