Wall clock time and date at job start Mon Mar 30 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00028 * 2 1 4 4 C 1.53004 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46817 * 64.99718 * 4 3 2 6 6 C 1.46898 * 110.99666 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47012 * 180.02562 * 6 5 4 8 8 N 1.31803 * 119.66701 * 89.99833 * 7 6 5 9 9 C 1.31874 * 121.79448 * 179.72676 * 8 7 6 10 10 C 1.50692 * 119.54580 * 180.02562 * 9 8 7 11 11 C 1.38300 * 120.91248 * 359.97438 * 9 8 7 12 12 C 1.38490 * 119.23781 * 0.02562 * 11 9 8 13 13 C 1.38852 * 119.66419 * 269.72545 * 7 6 5 14 14 O 1.35760 * 120.48415 * 0.25332 * 13 7 6 15 15 C 1.34833 * 116.99605 * 174.49787 * 14 13 7 16 16 H 1.07999 * 120.00488 * 5.05655 * 15 14 13 17 17 C 1.38665 * 119.99944 * 185.06369 * 15 14 13 18 18 N 1.31558 * 119.99761 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00047 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47179 * 60.00089 * 19 17 15 21 21 H 1.48499 * 109.46972 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46941 * 299.99921 * 19 17 15 23 23 H 1.09003 * 109.47070 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47166 * 300.00206 * 1 2 3 25 25 H 1.09001 * 109.47169 * 59.99980 * 1 2 3 26 26 H 1.09001 * 109.47212 * 59.99990 * 3 2 1 27 27 H 1.09005 * 109.47071 * 299.99714 * 3 2 1 28 28 H 1.09002 * 109.46919 * 305.00118 * 4 3 2 29 29 H 1.08998 * 109.47367 * 185.00141 * 4 3 2 30 30 H 1.00906 * 110.99869 * 56.04999 * 5 4 3 31 31 H 1.08997 * 109.47547 * 60.00462 * 6 5 4 32 32 H 1.09001 * 109.47477 * 299.99863 * 6 5 4 33 33 H 1.09005 * 109.47572 * 89.99615 * 10 9 8 34 34 H 1.08999 * 109.47326 * 209.99616 * 10 9 8 35 35 H 1.09005 * 109.47260 * 329.99648 * 10 9 8 36 36 H 1.08000 * 120.37645 * 179.97438 * 11 9 8 37 37 H 1.07990 * 120.81964 * 179.97438 * 12 11 9 38 38 H 0.96995 * 119.99701 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 5.4404 0.4291 -1.2890 7 6 5.8560 -0.2113 -2.5884 8 7 6.1185 0.5463 -3.6344 9 6 6.4905 0.0309 -4.7899 10 6 6.7786 0.9447 -5.9529 11 6 6.6208 -1.3368 -4.9487 12 6 6.3550 -2.1708 -3.8755 13 6 5.9639 -1.5932 -2.6698 14 8 5.6930 -2.3700 -1.5898 15 6 5.7089 -3.7052 -1.7768 16 1 6.0097 -4.1135 -2.7304 17 6 5.3389 -4.5543 -0.7448 18 7 4.9729 -4.0570 0.4168 19 14 5.3603 -6.4041 -1.0041 20 1 6.7370 -6.8395 -1.3508 21 1 4.9247 -7.0836 0.2424 22 1 4.4353 -6.7595 -2.1102 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1764 0.0902 30 1 3.6426 1.0801 -2.0527 31 1 5.7686 -0.1925 -0.4559 32 1 5.8971 1.4156 -1.2082 33 1 7.8321 1.2244 -5.9430 34 1 6.5483 0.4296 -6.8855 35 1 6.1639 1.8412 -5.8716 36 1 6.9257 -1.7497 -5.8989 37 1 6.4482 -3.2424 -3.9711 38 1 4.7144 -4.6510 1.1388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091996485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:40 Heat of formation + Delta-G solvation = -38.478411 kcal Electronic energy + Delta-G solvation = -20180.051981 eV Core-core repulsion = 17023.565319 eV Total energy + Delta-G solvation = -3156.486661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.66846 -37.72873 -37.11398 -35.42582 -32.50571 -31.88176 -30.90039 -29.27346 -26.96682 -25.96049 -24.99692 -24.30773 -21.68932 -21.41978 -20.75318 -17.97069 -16.97019 -16.41735 -15.74546 -15.63278 -15.31961 -14.53066 -14.42343 -14.20915 -14.02496 -13.58154 -13.43031 -13.05495 -12.91846 -12.47794 -12.32986 -12.03523 -11.69364 -11.51950 -11.46161 -11.38835 -11.19648 -10.94265 -10.84616 -10.60803 -10.52535 -9.63615 -9.38345 -8.94522 -8.73244 -8.65911 -7.76163 -7.20945 -6.43927 -4.01298 2.02095 2.30171 3.13299 3.15654 3.17520 3.96084 4.09132 4.41036 4.82774 5.05013 5.11183 5.26620 5.33795 5.39657 5.50038 5.53876 5.54884 5.61835 5.66804 5.77573 5.81998 5.89365 6.00822 6.05204 6.10460 6.22057 6.25542 6.39423 6.47143 6.74618 6.99649 7.09798 7.29345 7.44072 7.56869 7.64784 7.95377 7.97747 8.88758 8.99498 9.66809 10.71865 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.008464 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.001813 B = 3307.301111 C = 5682.592720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.067 3.933 4 C 0.062 3.938 5 N -0.665 5.665 6 C 0.135 3.865 7 C 0.056 3.944 8 N -0.442 5.442 9 C 0.010 3.990 10 C -0.079 4.079 11 C -0.116 4.116 12 C -0.203 4.203 13 C 0.123 3.877 14 O -0.149 6.149 15 C -0.396 4.396 16 H 0.089 0.911 17 C 0.045 3.955 18 N -0.846 5.846 19 Si 0.939 3.061 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.270 1.270 23 H 0.083 0.917 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.334 0.666 31 H 0.090 0.910 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.135 0.865 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 7.992 -3.672 9.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.010 4.010 4 C -0.068 4.068 5 N -0.296 5.296 6 C 0.006 3.994 7 C -0.087 4.087 8 N -0.153 5.153 9 C -0.128 4.128 10 C -0.137 4.137 11 C -0.136 4.136 12 C -0.230 4.230 13 C 0.065 3.935 14 O -0.049 6.049 15 C -0.472 4.472 16 H 0.107 0.893 17 C -0.161 4.161 18 N -0.479 5.479 19 Si 0.764 3.236 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.195 1.195 23 H 0.102 0.898 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.151 0.849 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.318 8.015 -2.866 9.136 hybrid contribution 0.123 -0.863 -0.521 1.016 sum -3.195 7.152 -3.388 8.534 Atomic orbital electron populations 1.22701 0.82344 1.02556 0.98978 1.88174 1.18271 1.26681 1.95042 1.22519 0.94040 0.85333 0.99133 1.21950 0.92766 0.97195 0.94840 1.60283 1.10747 1.55506 1.03087 1.20424 0.87096 0.97811 0.94114 1.19989 1.06099 0.87765 0.94868 1.66962 1.09808 1.39685 0.98822 1.20487 1.06752 0.91902 0.93622 1.20354 1.01037 0.98201 0.94082 1.21543 0.99733 0.93832 0.98460 1.21520 1.07089 1.00885 0.93490 1.20075 0.93648 0.91894 0.87920 1.84019 1.74462 1.18211 1.28201 1.21273 1.47267 0.78128 1.00529 0.89345 1.25275 0.95926 1.00266 0.94658 1.70043 1.39498 1.35954 1.02383 0.85815 0.79000 0.80604 0.78211 1.19538 1.20194 1.19477 0.89815 0.94838 0.94659 0.93493 0.93924 0.89708 0.94454 0.84857 0.89134 0.95074 0.92333 0.92191 0.91912 0.86604 0.84742 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.53 10.65 -35.23 -0.38 -6.90 16 3 C 0.07 0.97 6.22 37.16 0.23 1.21 16 4 C 0.06 1.00 6.07 -3.82 -0.02 0.98 16 5 N -0.66 -12.91 6.44 -115.05 -0.74 -13.65 16 6 C 0.13 2.76 5.76 -4.97 -0.03 2.73 16 7 C 0.06 1.25 6.31 -82.37 -0.52 0.73 16 8 N -0.44 -9.24 10.18 -5.58 -0.06 -9.29 16 9 C 0.01 0.18 6.78 -82.56 -0.56 -0.38 16 10 C -0.08 -1.14 10.16 36.00 0.37 -0.77 16 11 C -0.12 -2.21 9.73 -39.47 -0.38 -2.59 16 12 C -0.20 -4.53 9.27 -39.10 -0.36 -4.89 16 13 C 0.12 3.04 6.63 -38.96 -0.26 2.79 16 14 O -0.15 -4.21 8.81 0.01 0.00 -4.21 16 15 C -0.40 -11.02 9.50 30.89 0.29 -10.72 16 16 H 0.09 2.28 5.26 -52.49 -0.28 2.00 16 17 C 0.05 1.23 5.49 -17.51 -0.10 1.14 16 18 N -0.85 -24.63 13.67 55.48 0.76 -23.87 16 19 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.33 6.10 8.72 -39.29 -0.34 5.76 16 31 H 0.09 2.05 7.52 -51.93 -0.39 1.66 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.13 2.91 5.76 -52.49 -0.30 2.61 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -32.01 326.70 -6.26 -38.27 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.52 Total: 7.54 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.23 Total: -8.26 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.04 Total: -46.81 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.38 Total: -11.12 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.01 -6.26 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091996485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.212 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds