Wall clock time and date at job start Mon Mar 30 2020 04:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00028 * 2 1 4 4 C 1.53004 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46817 * 64.99718 * 4 3 2 6 6 C 1.46898 * 110.99666 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47012 * 180.02562 * 6 5 4 8 8 N 1.31803 * 119.66701 * 89.99833 * 7 6 5 9 9 C 1.31874 * 121.79448 * 179.72676 * 8 7 6 10 10 C 1.50692 * 119.54580 * 180.02562 * 9 8 7 11 11 C 1.38300 * 120.91248 * 359.97438 * 9 8 7 12 12 C 1.38490 * 119.23781 * 0.02562 * 11 9 8 13 13 C 1.38852 * 119.66419 * 269.72545 * 7 6 5 14 14 O 1.35760 * 120.48415 * 0.25332 * 13 7 6 15 15 C 1.34833 * 116.99605 * 174.49787 * 14 13 7 16 16 H 1.07999 * 120.00488 * 5.05655 * 15 14 13 17 17 C 1.38665 * 119.99944 * 185.06369 * 15 14 13 18 18 N 1.31558 * 119.99761 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00047 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47179 * 60.00089 * 19 17 15 21 21 H 1.48499 * 109.46972 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46941 * 299.99921 * 19 17 15 23 23 H 1.09003 * 109.47070 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47166 * 300.00206 * 1 2 3 25 25 H 1.09001 * 109.47169 * 59.99980 * 1 2 3 26 26 H 1.09001 * 109.47212 * 59.99990 * 3 2 1 27 27 H 1.09005 * 109.47071 * 299.99714 * 3 2 1 28 28 H 1.09002 * 109.46919 * 305.00118 * 4 3 2 29 29 H 1.08998 * 109.47367 * 185.00141 * 4 3 2 30 30 H 1.00906 * 110.99869 * 56.04999 * 5 4 3 31 31 H 1.08997 * 109.47547 * 60.00462 * 6 5 4 32 32 H 1.09001 * 109.47477 * 299.99863 * 6 5 4 33 33 H 1.09005 * 109.47572 * 89.99615 * 10 9 8 34 34 H 1.08999 * 109.47326 * 209.99616 * 10 9 8 35 35 H 1.09005 * 109.47260 * 329.99648 * 10 9 8 36 36 H 1.08000 * 120.37645 * 179.97438 * 11 9 8 37 37 H 1.07990 * 120.81964 * 179.97438 * 12 11 9 38 38 H 0.96995 * 119.99701 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 5.4404 0.4291 -1.2890 7 6 5.8560 -0.2113 -2.5884 8 7 6.1185 0.5463 -3.6344 9 6 6.4905 0.0309 -4.7899 10 6 6.7786 0.9447 -5.9529 11 6 6.6208 -1.3368 -4.9487 12 6 6.3550 -2.1708 -3.8755 13 6 5.9639 -1.5932 -2.6698 14 8 5.6930 -2.3700 -1.5898 15 6 5.7089 -3.7052 -1.7768 16 1 6.0097 -4.1135 -2.7304 17 6 5.3389 -4.5543 -0.7448 18 7 4.9729 -4.0570 0.4168 19 14 5.3603 -6.4041 -1.0041 20 1 6.7370 -6.8395 -1.3508 21 1 4.9247 -7.0836 0.2424 22 1 4.4353 -6.7595 -2.1102 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1764 0.0902 30 1 3.6426 1.0801 -2.0527 31 1 5.7686 -0.1925 -0.4559 32 1 5.8971 1.4156 -1.2082 33 1 7.8321 1.2244 -5.9430 34 1 6.5483 0.4296 -6.8855 35 1 6.1639 1.8412 -5.8716 36 1 6.9257 -1.7497 -5.8989 37 1 6.4482 -3.2424 -3.9711 38 1 4.7144 -4.6510 1.1388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091996485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:39 Heat of formation + Delta-G solvation = -62.975001 kcal Electronic energy + Delta-G solvation = -20181.114232 eV Core-core repulsion = 17023.565319 eV Total energy + Delta-G solvation = -3157.548913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40018 -39.00899 -38.90534 -36.89824 -34.41263 -33.46265 -32.57541 -30.60799 -28.50978 -27.30189 -26.70648 -25.85550 -23.25024 -22.90899 -22.37074 -19.86639 -18.82383 -17.68411 -17.33835 -16.97640 -16.76941 -16.28951 -16.02685 -15.66342 -15.41614 -15.13363 -15.03741 -14.58706 -14.43814 -14.13452 -13.73062 -13.54810 -13.33052 -12.93813 -12.80589 -12.74037 -12.56524 -12.49837 -12.39226 -12.19075 -11.85457 -11.56094 -10.84877 -10.54490 -10.43255 -10.34620 -9.24648 -8.98098 -8.43567 -6.10980 0.33328 0.58460 1.35181 1.46244 1.51283 2.17601 2.77428 2.98058 3.06493 3.35366 3.43887 3.67356 3.90167 4.03920 4.12935 4.24404 4.32889 4.44383 4.47200 4.52342 4.57074 4.61216 4.63134 4.67478 4.85241 4.85426 4.94459 4.95604 5.00403 5.14124 5.26415 5.38392 5.52921 5.94116 5.97179 6.08628 6.38532 6.56940 6.97984 7.20263 7.76169 8.76983 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.008464 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.001813 B = 3307.301111 C = 5682.592720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.068 3.932 4 C 0.061 3.939 5 N -0.685 5.685 6 C 0.144 3.856 7 C 0.047 3.953 8 N -0.449 5.449 9 C 0.025 3.975 10 C -0.078 4.078 11 C -0.113 4.113 12 C -0.208 4.208 13 C 0.084 3.916 14 O -0.198 6.198 15 C -0.420 4.420 16 H 0.100 0.900 17 C -0.015 4.015 18 N -0.905 5.905 19 Si 1.015 2.985 20 H -0.255 1.255 21 H -0.272 1.272 22 H -0.260 1.260 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.340 0.660 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.162 0.838 37 H 0.135 0.865 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 9.078 -6.461 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.009 4.009 4 C -0.068 4.068 5 N -0.317 5.317 6 C 0.015 3.985 7 C -0.093 4.093 8 N -0.160 5.160 9 C -0.114 4.114 10 C -0.135 4.135 11 C -0.133 4.133 12 C -0.234 4.234 13 C 0.029 3.971 14 O -0.101 6.101 15 C -0.496 4.496 16 H 0.117 0.883 17 C -0.214 4.214 18 N -0.541 5.541 19 Si 0.834 3.166 20 H -0.180 1.180 21 H -0.197 1.197 22 H -0.184 1.184 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.179 0.821 37 H 0.152 0.848 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.175 9.151 -5.684 11.231 hybrid contribution 0.149 -0.916 0.073 0.931 sum -3.027 8.235 -5.611 10.414 Atomic orbital electron populations 1.22857 0.80271 1.02974 1.00830 1.88107 1.20841 1.28923 1.95456 1.22633 0.92386 0.84545 1.01300 1.22030 0.94536 0.97875 0.92333 1.60187 1.09924 1.56959 1.04669 1.20212 0.88224 0.97798 0.92269 1.20287 1.05673 0.87341 0.96035 1.67134 1.10446 1.39282 0.99154 1.21539 1.02640 0.93064 0.94123 1.20520 1.02456 0.97671 0.92867 1.22015 0.98436 0.93637 0.99196 1.21778 1.06455 1.01560 0.93635 1.20628 0.95059 0.92841 0.88596 1.84015 1.77540 1.18539 1.30012 1.21771 1.47860 0.78689 1.01325 0.88309 1.26530 0.95240 1.05596 0.94083 1.70205 1.42366 1.37850 1.03658 0.84711 0.79754 0.73704 0.78421 1.17969 1.19656 1.18421 0.90277 0.92502 0.93139 0.90516 0.92228 0.92508 0.91225 0.84154 0.92632 0.93001 0.90279 0.89119 0.91242 0.82083 0.84750 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -15.10 10.65 -148.98 -1.59 -16.69 16 3 C 0.07 1.92 6.22 71.98 0.45 2.37 16 4 C 0.06 2.00 6.07 86.30 0.52 2.52 16 5 N -0.68 -27.35 6.44 -517.91 -3.33 -30.69 16 6 C 0.14 6.16 5.76 85.56 0.49 6.65 16 7 C 0.05 2.16 6.31 42.71 0.27 2.43 16 8 N -0.45 -18.07 10.18 -171.57 -1.75 -19.81 16 9 C 0.02 0.87 6.78 42.56 0.29 1.16 16 10 C -0.08 -1.83 10.16 71.23 0.72 -1.11 16 11 C -0.11 -3.98 9.73 22.34 0.22 -3.76 16 12 C -0.21 -9.18 9.27 22.58 0.21 -8.97 16 13 C 0.08 4.28 6.63 22.67 0.15 4.43 16 14 O -0.20 -11.92 8.81 -22.88 -0.20 -12.12 16 15 C -0.42 -24.58 9.50 67.92 0.65 -23.93 16 16 H 0.10 5.27 5.26 -2.91 -0.02 5.25 16 17 C -0.02 -0.86 5.49 84.84 0.47 -0.39 16 18 N -0.90 -55.99 13.67 21.62 0.30 -55.69 16 19 Si 1.01 43.15 29.55 68.60 2.03 45.18 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 23 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.34 12.46 8.72 -89.69 -0.78 11.67 16 31 H 0.06 2.74 7.52 -2.39 -0.02 2.72 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16 35 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 37 H 0.13 5.83 5.76 -2.92 -0.02 5.81 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -75.02 326.70 1.42 -73.60 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.28 Total: 32.87 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 5.68 Total: -16.65 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -4.79 Total: -106.20 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.79 Total: -28.81 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -75.02 1.42 -73.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091996485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.629 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds