Wall clock time and date at job start Mon Mar 30 2020 04:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47202 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47016 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47234 * 180.02562 * 11 10 9 13 13 C 1.46199 * 119.01856 * 89.99307 * 12 11 10 14 14 C 1.51081 * 109.83179 * 213.68151 * 13 12 11 15 15 O 1.21283 * 120.92305 * 147.32320 * 14 13 12 16 16 N 1.34776 * 118.14643 * 327.34067 * 14 13 12 17 17 C 1.46266 * 128.00579 * 179.15473 * 16 14 13 18 18 C 1.53913 * 107.42519 * 200.77181 * 17 16 14 19 19 C 1.54192 * 105.53290 * 358.98571 * 18 17 16 20 20 C 1.47595 * 123.90516 * 359.78011 * 16 14 13 21 21 H 1.09007 * 111.26722 * 268.59182 * 20 16 14 22 22 C 1.34457 * 119.01158 * 269.72623 * 12 11 10 23 23 O 1.21287 * 119.73550 * 358.60461 * 22 12 11 24 24 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 26 26 H 1.09001 * 109.46881 * 60.00168 * 9 7 2 27 27 H 1.09008 * 109.46754 * 300.00121 * 10 9 7 28 28 H 1.08996 * 109.46647 * 60.00168 * 10 9 7 29 29 H 1.08999 * 109.46696 * 299.99947 * 11 10 9 30 30 H 1.09001 * 109.47410 * 59.99622 * 11 10 9 31 31 H 1.09001 * 109.41166 * 333.79411 * 13 12 11 32 32 H 1.09000 * 109.40617 * 93.56807 * 13 12 11 33 33 H 1.08990 * 109.85832 * 320.23933 * 17 16 14 34 34 H 1.08998 * 109.85347 * 81.30985 * 17 16 14 35 35 H 1.08995 * 110.23290 * 239.96703 * 18 17 16 36 36 H 1.09000 * 110.22928 * 117.99649 * 18 17 16 37 37 H 1.09001 * 110.45794 * 223.92785 * 19 18 17 38 38 H 1.08996 * 110.56676 * 101.41436 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0399 -4.0177 -0.0004 13 6 6.2762 -4.6860 -1.2791 14 6 5.9608 -6.1582 -1.1541 15 8 5.5155 -6.7822 -2.0939 16 7 6.1876 -6.7586 0.0311 17 6 5.9467 -8.1549 0.3940 18 6 5.8590 -8.2236 1.9291 19 6 6.0912 -6.7807 2.4209 20 6 6.7309 -6.0646 1.2150 21 1 7.8184 -6.1308 1.2477 22 6 6.2625 -4.6311 1.1753 23 8 6.0817 -4.0283 2.2121 24 1 -0.4849 0.8401 -0.0004 25 1 3.8746 -0.6808 -0.8905 26 1 3.8752 -0.6797 0.8895 27 1 3.6585 -3.1502 0.8904 28 1 3.6579 -3.1505 -0.8897 29 1 5.9148 -2.1228 -0.8899 30 1 5.9149 -2.1226 0.8900 31 1 5.6378 -4.2423 -2.0431 32 1 7.3208 -4.5622 -1.5648 33 1 5.0095 -8.4954 -0.0460 34 1 6.7702 -8.7762 0.0420 35 1 6.6316 -8.8846 2.3216 36 1 4.8725 -8.5719 2.2350 37 1 6.7710 -6.7734 3.2729 38 1 5.1447 -6.3095 2.6858 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094456550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:33 Heat of formation + Delta-G solvation = -66.938051 kcal Electronic energy + Delta-G solvation = -20584.303288 eV Core-core repulsion = 17426.582524 eV Total energy + Delta-G solvation = -3157.720764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.35500 -38.98371 -37.74161 -36.05615 -33.95442 -32.23714 -31.42640 -30.05215 -28.49934 -26.96346 -24.15790 -23.54989 -21.65644 -20.93672 -20.19163 -18.51914 -18.05502 -17.28901 -16.88762 -16.42403 -15.63641 -15.12023 -14.88501 -14.32448 -14.20348 -14.11998 -13.94156 -13.68657 -13.22744 -12.89034 -12.68191 -12.43118 -12.17289 -11.99951 -11.76890 -11.64411 -11.18640 -11.00182 -10.78963 -10.44727 -10.26617 -9.92768 -9.75649 -9.74049 -9.21930 -9.06656 -8.66171 -8.52704 -6.02750 -4.01048 2.05846 2.26494 2.72902 2.91600 3.31409 3.39094 3.42726 3.82357 4.00266 4.21346 4.46273 4.51695 4.68436 4.79270 4.94909 4.96031 5.13050 5.30559 5.37944 5.39499 5.40932 5.51913 5.69994 5.71622 5.79004 5.93607 5.97082 6.03665 6.40424 6.66788 6.83967 6.96256 7.19604 7.27437 7.41692 7.72344 7.79355 7.97427 8.55366 9.02062 9.59158 11.10861 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027436 B = 0.004489 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.321568 B = 6236.452721 C = 6391.937569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.106 3.894 12 N -0.605 5.605 13 C 0.099 3.901 14 C 0.529 3.471 15 O -0.523 6.523 16 N -0.614 5.614 17 C 0.108 3.892 18 C -0.132 4.132 19 C -0.114 4.114 20 C 0.115 3.885 21 H 0.115 0.885 22 C 0.509 3.491 23 O -0.518 6.518 24 H 0.263 0.737 25 H 0.012 0.988 26 H 0.018 0.982 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.227 -14.963 1.703 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.154 4.154 11 C -0.015 4.015 12 N -0.340 5.340 13 C -0.027 4.027 14 C 0.317 3.683 15 O -0.398 6.398 16 N -0.351 5.351 17 C -0.015 4.015 18 C -0.170 4.170 19 C -0.152 4.152 20 C 0.008 3.992 21 H 0.133 0.867 22 C 0.295 3.705 23 O -0.392 6.392 24 H 0.073 0.927 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.143 0.857 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.708 -14.839 1.640 23.162 hybrid contribution 0.321 0.890 -0.127 0.954 sum 18.029 -13.950 1.513 22.846 Atomic orbital electron populations 1.69921 1.06335 1.26874 1.51170 1.25037 0.94741 0.99189 0.94551 0.86762 0.80420 0.83566 0.78445 1.20293 1.21376 1.18935 1.21108 0.89402 0.94473 1.50791 0.91163 1.19507 0.97352 0.91599 0.96352 1.21803 0.91474 1.00506 1.01605 1.21957 0.96758 0.79446 1.03334 1.47813 1.65653 1.15766 1.04741 1.21802 1.04234 0.88615 0.88069 1.20534 0.77294 0.89406 0.81098 1.90776 1.44124 1.66930 1.37936 1.48502 1.64249 1.11284 1.11099 1.21812 1.02345 0.81895 0.95419 1.22434 1.03625 0.97034 0.93903 1.22345 1.02809 0.94291 0.95794 1.22313 1.00234 0.89576 0.87071 0.86707 1.20428 0.78089 0.88296 0.83735 1.90779 1.50826 1.65879 1.31740 0.92742 0.96952 0.96339 0.92367 0.92702 0.90383 0.89384 0.85745 0.88194 0.90258 0.91154 0.90001 0.89866 0.88899 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.48 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 10 C -0.12 -2.32 5.48 -26.73 -0.15 -2.46 16 11 C 0.11 1.66 5.29 -4.05 -0.02 1.63 16 12 N -0.61 -8.22 2.80 -175.11 -0.49 -8.71 16 13 C 0.10 1.10 6.57 -5.17 -0.03 1.06 16 14 C 0.53 6.87 7.82 -10.80 -0.08 6.79 16 15 O -0.52 -8.49 17.63 5.55 0.10 -8.39 16 16 N -0.61 -6.79 3.22 -165.29 -0.53 -7.32 16 17 C 0.11 0.94 7.05 -3.69 -0.03 0.92 16 18 C -0.13 -0.89 6.93 -25.63 -0.18 -1.07 16 19 C -0.11 -1.00 6.11 -25.51 -0.16 -1.16 16 20 C 0.11 1.15 3.88 -67.80 -0.26 0.89 16 21 H 0.12 0.85 8.14 -51.92 -0.42 0.42 16 22 C 0.51 7.08 7.07 -11.05 -0.08 7.00 16 23 O -0.52 -8.99 15.72 5.55 0.09 -8.90 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 26 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 27 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 30 H 0.09 1.47 7.30 -51.93 -0.38 1.09 16 31 H 0.12 1.37 8.01 -51.93 -0.42 0.95 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.99 7.64 -51.93 -0.40 0.59 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -35.54 312.25 -7.32 -42.87 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -5.77 Total: -3.48 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.53 Total: -0.38 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.25 Total: -43.63 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.19 Total: -17.30 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.54 -7.32 -42.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094456550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.071 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds