Wall clock time and date at job start Mon Mar 30 2020 04:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47202 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47016 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47234 * 180.02562 * 11 10 9 13 13 C 1.46199 * 119.01856 * 89.99307 * 12 11 10 14 14 C 1.51081 * 109.83179 * 213.68151 * 13 12 11 15 15 O 1.21283 * 120.92305 * 147.32320 * 14 13 12 16 16 N 1.34776 * 118.14643 * 327.34067 * 14 13 12 17 17 C 1.46266 * 128.00579 * 179.15473 * 16 14 13 18 18 C 1.53913 * 107.42519 * 200.77181 * 17 16 14 19 19 C 1.54192 * 105.53290 * 358.98571 * 18 17 16 20 20 C 1.47595 * 123.90516 * 359.78011 * 16 14 13 21 21 H 1.09007 * 111.26722 * 268.59182 * 20 16 14 22 22 C 1.34457 * 119.01158 * 269.72623 * 12 11 10 23 23 O 1.21287 * 119.73550 * 358.60461 * 22 12 11 24 24 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 26 26 H 1.09001 * 109.46881 * 60.00168 * 9 7 2 27 27 H 1.09008 * 109.46754 * 300.00121 * 10 9 7 28 28 H 1.08996 * 109.46647 * 60.00168 * 10 9 7 29 29 H 1.08999 * 109.46696 * 299.99947 * 11 10 9 30 30 H 1.09001 * 109.47410 * 59.99622 * 11 10 9 31 31 H 1.09001 * 109.41166 * 333.79411 * 13 12 11 32 32 H 1.09000 * 109.40617 * 93.56807 * 13 12 11 33 33 H 1.08990 * 109.85832 * 320.23933 * 17 16 14 34 34 H 1.08998 * 109.85347 * 81.30985 * 17 16 14 35 35 H 1.08995 * 110.23290 * 239.96703 * 18 17 16 36 36 H 1.09000 * 110.22928 * 117.99649 * 18 17 16 37 37 H 1.09001 * 110.45794 * 223.92785 * 19 18 17 38 38 H 1.08996 * 110.56676 * 101.41436 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0399 -4.0177 -0.0004 13 6 6.2762 -4.6860 -1.2791 14 6 5.9608 -6.1582 -1.1541 15 8 5.5155 -6.7822 -2.0939 16 7 6.1876 -6.7586 0.0311 17 6 5.9467 -8.1549 0.3940 18 6 5.8590 -8.2236 1.9291 19 6 6.0912 -6.7807 2.4209 20 6 6.7309 -6.0646 1.2150 21 1 7.8184 -6.1308 1.2477 22 6 6.2625 -4.6311 1.1753 23 8 6.0817 -4.0283 2.2121 24 1 -0.4849 0.8401 -0.0004 25 1 3.8746 -0.6808 -0.8905 26 1 3.8752 -0.6797 0.8895 27 1 3.6585 -3.1502 0.8904 28 1 3.6579 -3.1505 -0.8897 29 1 5.9148 -2.1228 -0.8899 30 1 5.9149 -2.1226 0.8900 31 1 5.6378 -4.2423 -2.0431 32 1 7.3208 -4.5622 -1.5648 33 1 5.0095 -8.4954 -0.0460 34 1 6.7702 -8.7762 0.0420 35 1 6.6316 -8.8846 2.3216 36 1 4.8725 -8.5719 2.2350 37 1 6.7710 -6.7734 3.2729 38 1 5.1447 -6.3095 2.6858 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094456550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:33 Heat of formation + Delta-G solvation = -92.370276 kcal Electronic energy + Delta-G solvation = -20585.406112 eV Core-core repulsion = 17426.582524 eV Total energy + Delta-G solvation = -3158.823588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.32518 -40.07597 -38.64903 -37.29652 -35.73297 -33.94024 -32.57681 -31.03244 -29.63616 -28.44844 -25.38805 -24.70864 -22.86692 -21.96772 -21.70187 -19.50579 -19.11292 -18.83968 -18.19565 -17.64237 -16.71666 -16.28246 -15.98797 -15.86136 -15.61532 -15.24167 -15.01605 -14.79227 -14.61455 -14.18168 -13.94410 -13.60684 -13.43244 -13.20983 -12.92157 -12.77183 -12.49894 -12.41623 -12.05382 -11.83958 -11.65938 -11.57123 -11.42967 -11.35207 -11.01737 -10.78075 -9.98333 -9.83951 -8.31262 -6.36953 1.05031 1.28283 1.36033 1.39631 1.51734 1.75079 1.96112 2.36162 2.92549 3.04177 3.16413 3.45535 3.80131 3.99946 4.06523 4.11319 4.14209 4.27829 4.30376 4.35831 4.49368 4.64536 4.72216 4.77251 4.83992 4.89001 4.98548 5.03798 5.12594 5.21191 5.28230 5.44675 5.50930 5.63392 6.00958 6.19499 6.24870 6.70572 6.74387 6.92076 7.27777 8.86210 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027436 B = 0.004489 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.321568 B = 6236.452721 C = 6391.937569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.539 4.539 8 H 0.020 0.980 9 C -0.006 4.006 10 C -0.105 4.105 11 C 0.117 3.883 12 N -0.606 5.606 13 C 0.100 3.900 14 C 0.522 3.478 15 O -0.565 6.565 16 N -0.616 5.616 17 C 0.100 3.900 18 C -0.119 4.119 19 C -0.115 4.115 20 C 0.123 3.877 21 H 0.156 0.844 22 C 0.500 3.500 23 O -0.559 6.559 24 H 0.267 0.733 25 H 0.035 0.965 26 H 0.020 0.980 27 H 0.025 0.975 28 H 0.048 0.952 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.143 0.857 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.721 -14.733 1.617 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.576 4.576 8 H 0.039 0.961 9 C -0.044 4.044 10 C -0.144 4.144 11 C -0.005 4.005 12 N -0.340 5.340 13 C -0.025 4.025 14 C 0.310 3.690 15 O -0.443 6.443 16 N -0.351 5.351 17 C -0.022 4.022 18 C -0.157 4.157 19 C -0.153 4.153 20 C 0.017 3.983 21 H 0.173 0.827 22 C 0.288 3.712 23 O -0.436 6.436 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.099 0.901 31 H 0.143 0.857 32 H 0.161 0.839 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 21.228 -14.651 1.562 25.840 hybrid contribution -0.885 0.709 -0.067 1.136 sum 20.344 -13.942 1.494 24.708 Atomic orbital electron populations 1.70093 1.08593 1.28324 1.52552 1.26137 0.95700 1.03963 0.93785 0.85538 0.79463 0.77353 0.79566 1.18398 1.21135 1.16613 1.21486 0.92428 0.92837 1.50896 0.96138 1.19439 0.93668 0.94160 0.97161 1.21613 0.95220 0.97831 0.99717 1.21688 0.92959 0.81131 1.04678 1.47831 1.65100 1.15199 1.05838 1.22005 1.06798 0.87080 0.86618 1.20858 0.76813 0.90130 0.81157 1.90756 1.46188 1.67940 1.39423 1.48639 1.63381 1.12301 1.10771 1.22041 1.02355 0.80958 0.96822 1.22431 1.04915 0.96195 0.92171 1.22381 1.01658 0.95055 0.96246 1.22529 1.02250 0.86642 0.86894 0.82732 1.21178 0.77236 0.89683 0.83103 1.90759 1.52598 1.67157 1.33111 0.92433 0.94709 0.96143 0.95628 0.93316 0.86892 0.90135 0.85675 0.83923 0.92122 0.88909 0.86569 0.89975 0.86514 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.81 13.96 21.45 0.30 -61.51 16 2 C 0.00 0.03 5.47 84.65 0.46 0.49 16 3 Si 0.96 44.60 27.47 68.60 1.88 46.49 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 7 C -0.54 -32.42 9.66 25.60 0.25 -32.18 16 8 H 0.02 1.38 7.99 -2.91 -0.02 1.35 16 9 C -0.01 -0.30 4.04 29.85 0.12 -0.18 16 10 C -0.11 -4.27 5.48 30.59 0.17 -4.10 16 11 C 0.12 3.47 5.29 86.38 0.46 3.93 16 12 N -0.61 -15.48 2.80 -826.50 -2.31 -17.79 16 13 C 0.10 1.99 6.57 85.81 0.56 2.55 16 14 C 0.52 12.97 7.82 87.78 0.69 13.66 16 15 O -0.56 -18.28 17.63 -3.04 -0.05 -18.34 16 16 N -0.62 -12.56 3.22 -795.23 -2.56 -15.12 16 17 C 0.10 1.57 7.05 86.73 0.61 2.18 16 18 C -0.12 -1.32 6.93 31.31 0.22 -1.10 16 19 C -0.11 -1.82 6.11 31.39 0.19 -1.62 16 20 C 0.12 2.16 3.88 44.48 0.17 2.34 16 21 H 0.16 1.60 8.14 -2.38 -0.02 1.58 16 22 C 0.50 13.34 7.07 87.76 0.62 13.96 16 23 O -0.56 -19.33 15.72 -3.05 -0.05 -19.37 16 24 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 25 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 26 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 27 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.11 2.59 8.05 -2.39 -0.02 2.57 16 30 H 0.08 2.56 7.30 -2.39 -0.02 2.54 16 31 H 0.13 2.52 8.01 -2.39 -0.02 2.50 16 32 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.22 7.64 -2.39 -0.02 1.20 16 Total: -1.00 -82.01 312.25 2.72 -79.29 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.99 Total: 6.43 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 4.52 Total: -0.08 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -4.57 Total: -94.42 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.10 Total: -37.71 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Total: -82.01 2.72 -79.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094456550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.079 kcal (2) G-P(sol) polarization free energy of solvation -82.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds