Wall clock time and date at job start Mon Mar 30 2020 04:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9 13 13 C 1.46200 * 119.01538 * 269.73069 * 12 11 10 14 14 C 1.51375 * 109.66714 * 146.18438 * 13 12 11 15 15 O 1.21281 * 120.98494 * 212.84699 * 14 13 12 16 16 N 1.34772 * 118.08229 * 33.01038 * 14 13 12 17 17 C 1.46268 * 128.01299 * 180.64638 * 16 14 13 18 18 C 1.53903 * 107.43031 * 159.24227 * 17 16 14 19 19 C 1.55354 * 105.82109 * 1.60979 * 18 17 16 20 20 C 1.47595 * 123.90364 * 0.03575 * 16 14 13 21 21 H 1.09000 * 111.26733 * 90.61661 * 20 16 14 22 22 C 1.34458 * 119.01167 * 90.00106 * 12 11 10 23 23 O 1.21284 * 119.74163 * 1.34743 * 22 12 11 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.09002 * 109.41123 * 266.42303 * 13 12 11 32 32 H 1.08998 * 109.41024 * 26.19967 * 13 12 11 33 33 H 1.09004 * 109.85416 * 278.70205 * 17 16 14 34 34 H 1.08997 * 109.85761 * 39.77682 * 17 16 14 35 35 H 1.09001 * 110.23623 * 120.02999 * 18 17 16 36 36 H 1.09002 * 110.23451 * 241.91465 * 18 17 16 37 37 H 1.09001 * 110.26682 * 258.06678 * 19 18 17 38 38 H 1.09004 * 111.18518 * 135.13799 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0006 13 6 2.8874 -6.6437 -1.2782 14 6 4.3245 -7.1029 -1.1540 15 8 5.0869 -7.0295 -2.0944 16 7 4.7318 -7.5990 0.0310 17 6 6.0617 -8.0885 0.3934 18 6 6.1660 -8.0465 1.9283 19 6 4.7877 -7.5372 2.4326 20 6 3.8599 -7.7221 1.2155 21 1 3.3629 -8.6919 1.2415 22 6 2.8567 -6.5963 1.1761 23 8 2.4300 -6.1343 2.2132 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 2.2569 -7.4875 -1.5586 32 1 2.8191 -5.8716 -2.0445 33 1 6.1878 -9.1125 0.0417 34 1 6.8250 -7.4472 -0.0473 35 1 6.3523 -9.0460 2.3210 36 1 6.9622 -7.3675 2.2336 37 1 4.8515 -6.4841 2.7067 38 1 4.4330 -8.1303 3.2756 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094456551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:36 Heat of formation + Delta-G solvation = -70.787236 kcal Electronic energy + Delta-G solvation = -20542.135996 eV Core-core repulsion = 17384.248319 eV Total energy + Delta-G solvation = -3157.887677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29396 -38.93148 -37.65784 -35.97783 -33.87464 -32.19244 -31.28161 -29.95165 -28.33220 -26.62120 -24.12076 -23.58235 -21.75842 -20.95512 -20.21628 -18.45870 -18.00775 -17.24371 -16.71968 -16.13338 -15.56629 -15.01505 -14.84828 -14.42615 -14.24040 -14.11469 -13.79738 -13.67669 -13.17409 -12.81887 -12.43111 -12.30592 -12.13074 -11.86741 -11.77953 -11.34681 -11.00275 -10.87727 -10.81827 -10.60510 -10.32960 -10.04824 -9.73461 -9.48155 -9.16168 -9.02913 -8.56031 -8.34408 -5.99403 -4.01338 2.09827 2.29966 2.78287 2.97517 3.32360 3.39680 3.44599 3.86221 4.01959 4.24622 4.47610 4.54616 4.69087 4.82252 4.94818 5.00716 5.18156 5.36736 5.39652 5.42508 5.48640 5.54672 5.71857 5.80398 5.87649 5.95560 6.11621 6.14886 6.55160 6.85903 6.99894 7.06414 7.28409 7.66166 7.75180 7.80137 7.99484 8.03959 8.43145 9.05142 9.62732 11.12011 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.004347 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.153517 B = 6439.575878 C = 6496.102539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.108 3.892 12 N -0.605 5.605 13 C 0.099 3.901 14 C 0.529 3.471 15 O -0.524 6.524 16 N -0.614 5.614 17 C 0.108 3.892 18 C -0.132 4.132 19 C -0.113 4.113 20 C 0.114 3.886 21 H 0.114 0.886 22 C 0.507 3.493 23 O -0.518 6.518 24 H 0.260 0.740 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.363 -20.374 1.688 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.012 4.012 12 N -0.340 5.340 13 C -0.027 4.027 14 C 0.317 3.683 15 O -0.399 6.399 16 N -0.351 5.351 17 C -0.014 4.014 18 C -0.170 4.170 19 C -0.151 4.151 20 C 0.007 3.993 21 H 0.132 0.868 22 C 0.293 3.707 23 O -0.393 6.393 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.389 -19.939 1.619 21.692 hybrid contribution 0.407 0.933 -0.110 1.024 sum 8.796 -19.006 1.509 20.997 Atomic orbital electron populations 1.69969 1.06024 1.26495 1.50998 1.25009 0.94849 0.99238 0.95307 0.86542 0.80140 0.83793 0.77582 1.19783 1.20987 1.20972 1.21250 0.93034 0.90987 1.50410 0.92753 1.19038 0.93849 0.91063 0.97371 1.21973 0.99722 0.93654 1.00743 1.21958 0.90914 0.84992 1.03379 1.47870 1.46032 1.35448 1.04633 1.21852 0.90935 1.01705 0.88188 1.20631 0.90169 0.76474 0.81038 1.90768 1.55997 1.55196 1.37926 1.48489 1.12197 1.63296 1.11091 1.21805 0.84499 0.99767 0.95366 1.22625 0.97887 1.02684 0.93832 1.22549 0.92846 1.04168 0.95553 1.22301 0.91373 0.98499 0.87113 0.86806 1.20441 0.82447 0.84044 0.83799 1.90779 1.56952 1.59811 1.31721 0.93052 0.96282 0.96459 0.93328 0.92990 0.89393 0.90376 0.88190 0.85797 0.91162 0.90318 0.90102 0.89901 0.89510 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.57 5.47 -26.74 -0.15 -2.72 16 11 C 0.11 1.81 5.29 -4.04 -0.02 1.79 16 12 N -0.61 -8.63 2.80 -174.93 -0.49 -9.12 16 13 C 0.10 1.15 6.59 -5.02 -0.03 1.12 16 14 C 0.53 7.03 7.82 -10.66 -0.08 6.95 16 15 O -0.52 -8.60 17.63 5.56 0.10 -8.51 16 16 N -0.61 -6.94 3.22 -165.17 -0.53 -7.47 16 17 C 0.11 0.96 7.05 -3.70 -0.03 0.94 16 18 C -0.13 -0.91 6.96 -25.01 -0.17 -1.08 16 19 C -0.11 -1.01 6.20 -24.88 -0.15 -1.17 16 20 C 0.11 1.18 3.85 -67.81 -0.26 0.92 16 21 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 22 C 0.51 7.32 7.08 -11.06 -0.08 7.25 16 23 O -0.52 -9.32 15.67 5.55 0.09 -9.23 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.59 7.31 -51.93 -0.38 1.21 16 30 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.12 1.43 8.01 -51.93 -0.42 1.02 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.99 7.61 -51.93 -0.40 0.60 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 315.91 15.07 4.76 4.76 Total: -1.00 -34.84 315.91 -7.69 -42.53 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -5.80 Total: -4.38 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.53 Total: 0.74 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.28 Total: -42.96 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.19 Total: -17.73 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.84 -7.69 -42.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094456551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.257 kcal (2) G-P(sol) polarization free energy of solvation -34.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds