Wall clock time and date at job start Mon Mar 30 2020 04:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9 13 13 C 1.46200 * 119.01538 * 269.73069 * 12 11 10 14 14 C 1.51375 * 109.66714 * 146.18438 * 13 12 11 15 15 O 1.21281 * 120.98494 * 212.84699 * 14 13 12 16 16 N 1.34772 * 118.08229 * 33.01038 * 14 13 12 17 17 C 1.46268 * 128.01299 * 180.64638 * 16 14 13 18 18 C 1.53903 * 107.43031 * 159.24227 * 17 16 14 19 19 C 1.55354 * 105.82109 * 1.60979 * 18 17 16 20 20 C 1.47595 * 123.90364 * 0.03575 * 16 14 13 21 21 H 1.09000 * 111.26733 * 90.61661 * 20 16 14 22 22 C 1.34458 * 119.01167 * 90.00106 * 12 11 10 23 23 O 1.21284 * 119.74163 * 1.34743 * 22 12 11 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.09002 * 109.41123 * 266.42303 * 13 12 11 32 32 H 1.08998 * 109.41024 * 26.19967 * 13 12 11 33 33 H 1.09004 * 109.85416 * 278.70205 * 17 16 14 34 34 H 1.08997 * 109.85761 * 39.77682 * 17 16 14 35 35 H 1.09001 * 110.23623 * 120.02999 * 18 17 16 36 36 H 1.09002 * 110.23451 * 241.91465 * 18 17 16 37 37 H 1.09001 * 110.26682 * 258.06678 * 19 18 17 38 38 H 1.09004 * 111.18518 * 135.13799 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0006 13 6 2.8874 -6.6437 -1.2782 14 6 4.3245 -7.1029 -1.1540 15 8 5.0869 -7.0295 -2.0944 16 7 4.7318 -7.5990 0.0310 17 6 6.0617 -8.0885 0.3934 18 6 6.1660 -8.0465 1.9283 19 6 4.7877 -7.5372 2.4326 20 6 3.8599 -7.7221 1.2155 21 1 3.3629 -8.6919 1.2415 22 6 2.8567 -6.5963 1.1761 23 8 2.4300 -6.1343 2.2132 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 2.2569 -7.4875 -1.5586 32 1 2.8191 -5.8716 -2.0445 33 1 6.1878 -9.1125 0.0417 34 1 6.8250 -7.4472 -0.0473 35 1 6.3523 -9.0460 2.3210 36 1 6.9622 -7.3675 2.2336 37 1 4.8515 -6.4841 2.7067 38 1 4.4330 -8.1303 3.2756 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094456551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:35 Heat of formation + Delta-G solvation = -94.527927 kcal Electronic energy + Delta-G solvation = -20543.165469 eV Core-core repulsion = 17384.248319 eV Total energy + Delta-G solvation = -3158.917151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.30808 -40.06722 -38.59399 -37.28157 -35.75289 -33.79452 -32.45827 -30.94784 -29.49390 -28.24610 -25.53863 -24.71800 -23.04554 -22.00413 -21.70206 -19.49016 -19.01870 -18.55321 -18.19127 -17.58058 -16.73544 -16.40265 -16.02869 -15.85849 -15.56975 -15.20998 -14.96750 -14.72202 -14.33495 -14.15273 -13.90712 -13.60146 -13.36149 -13.13306 -12.76628 -12.74734 -12.61069 -12.49004 -12.43510 -11.70874 -11.66968 -11.61251 -11.41580 -11.28749 -10.97514 -10.58646 -9.97503 -9.83884 -8.23353 -6.34231 1.05481 1.27585 1.36977 1.37335 1.50556 1.76400 1.95122 2.38556 2.92372 3.09675 3.15496 3.46975 3.80588 3.99957 4.08081 4.13042 4.14528 4.26965 4.32698 4.37976 4.53617 4.67243 4.73987 4.78322 4.88322 4.89537 5.05639 5.11918 5.13822 5.27109 5.28863 5.47000 5.66623 5.80357 6.01458 6.19918 6.21567 6.74555 6.80943 6.92521 7.34738 8.88395 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.004347 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.153517 B = 6439.575878 C = 6496.102539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.029 3.971 10 C -0.105 4.105 11 C 0.120 3.880 12 N -0.606 5.606 13 C 0.099 3.901 14 C 0.524 3.476 15 O -0.563 6.563 16 N -0.614 5.614 17 C 0.100 3.900 18 C -0.119 4.119 19 C -0.113 4.113 20 C 0.123 3.877 21 H 0.153 0.847 22 C 0.499 3.501 23 O -0.561 6.561 24 H 0.265 0.735 25 H -0.008 1.008 26 H 0.007 0.993 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.361 -21.897 1.654 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.069 0.931 9 C -0.008 4.008 10 C -0.144 4.144 11 C -0.002 4.002 12 N -0.339 5.339 13 C -0.025 4.025 14 C 0.313 3.687 15 O -0.441 6.441 16 N -0.350 5.350 17 C -0.021 4.021 18 C -0.157 4.157 19 C -0.152 4.152 20 C 0.017 3.983 21 H 0.170 0.830 22 C 0.286 3.714 23 O -0.438 6.438 24 H 0.074 0.926 25 H 0.010 0.990 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.405 -21.496 1.594 23.517 hybrid contribution 0.089 1.405 -0.070 1.410 sum 9.494 -20.091 1.524 22.273 Atomic orbital electron populations 1.70077 1.07572 1.27799 1.51429 1.25913 0.95804 1.03128 0.94589 0.85438 0.78830 0.78954 0.78065 1.19204 1.19838 1.20193 1.21653 0.93187 0.92673 1.50919 0.93105 1.18909 0.94177 0.92337 0.95426 1.21698 0.98532 0.94517 0.99656 1.21602 0.90827 0.83838 1.03907 1.47857 1.45539 1.34571 1.05946 1.22060 0.90808 1.03088 0.86587 1.20840 0.90441 0.76284 0.81168 1.90750 1.56955 1.57076 1.39321 1.48612 1.13358 1.62332 1.10659 1.22050 0.82820 1.00458 0.96787 1.22618 0.96444 1.04560 0.92072 1.22594 0.93992 1.02810 0.95787 1.22511 0.90422 0.98205 0.87180 0.82954 1.21259 0.82466 0.84593 0.83033 1.90760 1.58523 1.61383 1.33144 0.92605 0.98973 0.97492 0.92987 0.95272 0.90929 0.87831 0.84144 0.85795 0.88946 0.91900 0.86733 0.89759 0.92727 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 2 C 0.00 0.22 5.46 84.66 0.46 0.69 16 3 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.55 -32.28 9.11 25.60 0.23 -32.05 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.57 4.97 29.85 0.15 1.72 16 10 C -0.11 -4.55 5.47 30.59 0.17 -4.38 16 11 C 0.12 4.03 5.29 86.38 0.46 4.49 16 12 N -0.61 -16.71 2.80 -825.93 -2.31 -19.02 16 13 C 0.10 2.13 6.59 85.90 0.57 2.69 16 14 C 0.52 13.23 7.82 87.87 0.69 13.92 16 15 O -0.56 -18.17 17.63 -3.03 -0.05 -18.23 16 16 N -0.61 -12.67 3.22 -794.86 -2.56 -15.23 16 17 C 0.10 1.56 7.05 86.73 0.61 2.17 16 18 C -0.12 -1.28 6.96 31.71 0.22 -1.06 16 19 C -0.11 -1.80 6.20 31.79 0.20 -1.61 16 20 C 0.12 2.25 3.85 44.47 0.17 2.42 16 21 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 22 C 0.50 14.03 7.08 87.75 0.62 14.65 16 23 O -0.56 -20.42 15.67 -3.04 -0.05 -20.47 16 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 26 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 2.69 7.31 -2.39 -0.02 2.67 16 30 H 0.10 2.95 8.04 -2.39 -0.02 2.93 16 31 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.12 2.69 8.01 -2.39 -0.02 2.67 16 33 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 1.24 7.61 -2.39 -0.02 1.22 16 38 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -77.93 315.91 2.92 -75.01 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.04 Total: 3.53 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 4.54 Total: 3.64 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -4.59 Total: -90.97 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.10 Total: -38.69 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -77.93 2.92 -75.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094456551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.519 kcal (2) G-P(sol) polarization free energy of solvation -77.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds