Wall clock time and date at job start Mon Mar 30 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.50681 * 2 1 4 4 N 1.47070 * 109.50794 * 120.09088 * 2 1 3 5 5 C 1.47065 * 110.35947 * 176.88506 * 4 2 1 6 6 C 1.50657 * 109.24875 * 303.04370 * 5 4 2 7 7 O 1.21223 * 119.67160 * 208.81216 * 6 5 4 8 8 N 1.34447 * 120.65300 * 28.83813 * 6 5 4 9 9 C 1.46503 * 119.31757 * 179.52045 * 8 6 5 10 10 C 1.53001 * 109.46664 * 86.00350 * 9 8 6 11 11 C 1.50704 * 115.54990 * 55.26940 * 10 9 8 12 12 H 1.07994 * 120.00128 * 271.08969 * 11 10 9 13 13 C 1.37879 * 119.99796 * 90.81519 * 11 10 9 14 14 N 1.31513 * 120.00180 * 174.80521 * 13 11 10 15 15 Si 1.86798 * 119.99995 * 354.80459 * 13 11 10 16 16 H 1.48499 * 109.47267 * 92.30805 * 15 13 11 17 17 H 1.48495 * 109.47198 * 212.31188 * 15 13 11 18 18 H 1.48505 * 109.47349 * 332.30912 * 15 13 11 19 19 C 1.53000 * 117.51825 * 200.97095 * 10 9 8 20 20 C 1.53000 * 117.50128 * 269.60374 * 10 9 8 21 21 C 1.34449 * 121.36100 * 359.80552 * 8 6 5 22 22 O 1.21230 * 119.67083 * 180.19800 * 21 8 6 23 23 H 1.09000 * 109.47091 * 302.56162 * 1 2 3 24 24 H 1.09002 * 109.47176 * 62.55927 * 1 2 3 25 25 H 1.08994 * 109.47719 * 182.56216 * 1 2 3 26 26 H 1.09007 * 109.46716 * 180.09215 * 3 2 1 27 27 H 1.08998 * 109.47358 * 300.09284 * 3 2 1 28 28 H 1.08997 * 109.47103 * 60.09720 * 3 2 1 29 29 H 1.00900 * 110.99513 * 53.38665 * 4 2 1 30 30 H 1.09008 * 109.50624 * 183.11774 * 5 4 2 31 31 H 1.09001 * 109.51067 * 62.97967 * 5 4 2 32 32 H 1.08999 * 109.47422 * 326.00704 * 9 8 6 33 33 H 1.08998 * 109.46854 * 205.99982 * 9 8 6 34 34 H 0.97001 * 120.00186 * 179.97438 * 14 13 11 35 35 H 1.08997 * 117.49620 * 214.97027 * 19 10 9 36 36 H 1.09001 * 117.49580 * 359.97438 * 19 10 9 37 37 H 1.09006 * 117.49819 * 359.97095 * 20 10 9 38 38 H 1.08999 * 117.50354 * 144.97541 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 7 2.0212 -0.6950 1.1994 5 6 3.4897 -0.7712 1.1814 6 6 3.9358 -1.4617 -0.0811 7 8 4.9739 -2.0877 -0.0881 8 7 3.1941 -1.3902 -1.2002 9 6 3.6609 -2.0642 -2.4144 10 6 3.2003 -3.5231 -2.3970 11 6 1.7176 -3.7346 -2.2298 12 1 1.2919 -3.8158 -1.2406 13 6 0.9037 -3.8188 -3.3396 14 7 -0.3722 -4.1048 -3.1992 15 14 1.6135 -3.5265 -5.0426 16 1 2.0441 -4.8213 -5.6283 17 1 0.5786 -2.9100 -5.9110 18 1 2.7820 -2.6156 -4.9422 19 6 3.9602 -4.5149 -3.2800 20 6 4.1368 -4.5521 -1.7606 21 6 2.0358 -0.7083 -1.2296 22 8 1.3896 -0.6670 -2.2545 23 1 -0.3633 0.5531 0.8661 24 1 -0.3633 0.4736 -0.9120 25 1 -0.3634 -1.0265 0.0459 26 1 3.1310 1.4415 -0.0017 27 1 1.6766 1.9568 -0.8891 28 1 1.6794 1.9557 0.8908 29 1 1.6123 -1.6142 1.2775 30 1 3.8356 -1.3363 2.0470 31 1 3.9068 0.2354 1.2126 32 1 4.7495 -2.0274 -2.4548 33 1 3.2476 -1.5631 -3.2897 34 1 -0.9448 -4.1637 -3.9799 35 1 3.3877 -5.3204 -3.7399 36 1 4.7883 -4.1280 -3.8739 37 1 5.0813 -4.1898 -1.3547 38 1 3.6805 -5.3818 -1.2207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097317371.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:40 Heat of formation + Delta-G solvation = -26.776536 kcal Electronic energy + Delta-G solvation = -22128.811592 eV Core-core repulsion = 18972.832362 eV Total energy + Delta-G solvation = -3155.979230 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39206 -38.42139 -37.29451 -36.18461 -34.22946 -32.02926 -31.60003 -27.87007 -27.22992 -25.97012 -25.41307 -23.14105 -21.60181 -21.56021 -19.16536 -18.02597 -17.53959 -16.87647 -15.95574 -15.73794 -15.30287 -14.89454 -14.74786 -14.31921 -14.01977 -13.49242 -13.23285 -12.82538 -12.56364 -12.32700 -12.24533 -12.07657 -11.95927 -11.69789 -11.43197 -11.14053 -11.06897 -10.95928 -10.58442 -10.47050 -10.27145 -9.75026 -9.55830 -9.00044 -8.95857 -8.67764 -8.41469 -8.34089 -6.07246 -4.09020 2.03049 2.99544 3.24462 3.34771 3.43086 3.46618 4.03888 4.05259 4.48621 4.82799 4.90377 4.95604 5.01364 5.15351 5.25908 5.49127 5.64464 5.66444 5.77457 5.89177 5.91263 5.95423 6.04757 6.07654 6.13781 6.27544 6.40527 6.54312 6.54726 6.58253 6.78384 7.02917 7.06534 7.16870 7.53880 7.77930 8.01953 8.35813 8.49786 8.90361 9.58731 11.04956 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.009898 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.678615 B = 2828.258919 C = 3591.091363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.094 3.906 3 C -0.136 4.136 4 N -0.660 5.660 5 C 0.037 3.963 6 C 0.483 3.517 7 O -0.507 6.507 8 N -0.544 5.544 9 C 0.128 3.872 10 C -0.014 4.014 11 C -0.482 4.482 12 H 0.068 0.932 13 C 0.091 3.909 14 N -0.894 5.894 15 Si 0.886 3.114 16 H -0.283 1.283 17 H -0.295 1.295 18 H -0.263 1.263 19 C -0.196 4.196 20 C -0.174 4.174 21 C 0.493 3.507 22 O -0.460 6.460 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.359 0.641 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 10.058 7.682 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.000 4.000 3 C -0.194 4.194 4 N -0.293 5.293 5 C -0.096 4.096 6 C 0.271 3.729 7 O -0.379 6.379 8 N -0.285 5.285 9 C 0.007 3.993 10 C -0.016 4.016 11 C -0.519 4.519 12 H 0.086 0.914 13 C -0.112 4.112 14 N -0.531 5.531 15 Si 0.715 3.285 16 H -0.209 1.209 17 H -0.222 1.222 18 H -0.187 1.187 19 C -0.234 4.234 20 C -0.211 4.211 21 C 0.278 3.722 22 O -0.328 6.328 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.179 0.821 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.357 10.294 7.409 13.768 hybrid contribution 0.467 -0.808 -1.768 1.999 sum 5.824 9.487 5.641 12.479 Atomic orbital electron populations 1.21697 0.89959 1.03945 1.03060 1.21414 0.98262 0.95192 0.85129 1.21847 1.00996 0.92820 1.03695 1.60969 1.04762 1.25745 1.37806 1.22580 0.89328 1.02790 0.94887 1.22157 0.84251 0.80636 0.85899 1.90667 1.23467 1.39303 1.84479 1.46650 1.21620 1.46991 1.13251 1.21592 0.97434 0.94731 0.85579 1.19640 0.94705 0.86710 1.00530 1.19955 0.86976 1.50656 0.94298 0.91405 1.24836 0.94422 0.93041 0.98880 1.69875 1.05044 1.47785 1.30404 0.86773 0.78955 0.78355 0.84452 1.20949 1.22210 1.18735 1.22904 1.02703 1.04222 0.93549 1.22883 1.00793 1.03203 0.94203 1.21744 0.80113 0.78544 0.91782 1.90731 1.53030 1.56005 1.32991 0.90951 0.90481 0.91298 0.92472 0.91061 0.90057 0.82088 0.86152 0.86806 0.91557 0.89368 0.92713 0.89328 0.91013 0.90069 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.38 37.16 0.31 -1.49 16 2 C 0.09 1.33 0.94 -132.68 -0.13 1.20 16 3 C -0.14 -1.48 8.29 37.16 0.31 -1.18 16 4 N -0.66 -8.20 6.41 -102.20 -0.65 -8.86 16 5 C 0.04 0.44 6.30 -4.91 -0.03 0.41 16 6 C 0.48 8.21 7.58 -11.15 -0.08 8.13 16 7 O -0.51 -9.81 15.25 5.61 0.09 -9.73 16 8 N -0.54 -10.54 2.39 -115.56 -0.28 -10.82 16 9 C 0.13 2.80 4.78 -4.04 -0.02 2.78 16 10 C -0.01 -0.34 1.07 -155.66 -0.17 -0.51 16 11 C -0.48 -13.38 8.06 -34.44 -0.28 -13.65 16 12 H 0.07 2.07 8.06 -52.49 -0.42 1.64 16 13 C 0.09 2.65 5.47 -17.82 -0.10 2.55 16 14 N -0.89 -27.34 13.96 55.43 0.77 -26.56 16 15 Si 0.89 22.85 24.87 -169.99 -4.23 18.62 16 16 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 18 H -0.26 -6.48 5.66 56.52 0.32 -6.16 16 19 C -0.20 -4.38 7.60 -26.73 -0.20 -4.59 16 20 C -0.17 -3.82 9.57 -26.73 -0.26 -4.08 16 21 C 0.49 9.38 5.93 -11.16 -0.07 9.32 16 22 O -0.46 -10.64 14.99 5.60 0.08 -10.55 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.08 1.14 7.76 -51.93 -0.40 0.74 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.58 6.49 -51.93 -0.34 0.25 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.36 4.83 8.78 -39.29 -0.35 4.48 16 30 H 0.12 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.11 1.10 6.48 -51.93 -0.34 0.76 16 32 H 0.07 1.36 7.44 -51.93 -0.39 0.98 16 33 H 0.09 2.06 5.65 -51.93 -0.29 1.77 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.09 2.07 7.10 -51.93 -0.37 1.70 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.71 7.13 -51.93 -0.37 1.34 16 38 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 LS Contribution 301.88 15.07 4.55 4.55 Total: -1.00 -32.89 301.88 -5.81 -38.70 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.44 Total: 5.76 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.71 Total: -1.10 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.16 Total: -46.24 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.17 Total: -20.28 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.23 Total: 18.62 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.89 -5.81 -38.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097317371.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.923 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds