Wall clock time and date at job start Mon Mar 30 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 H 1.09003 * 109.54399 * 304.88070 * 3 2 1 5 5 N 1.47073 * 109.51169 * 64.99700 * 3 2 1 6 6 C 1.47066 * 110.36350 * 176.88760 * 5 3 2 7 7 C 1.50645 * 109.28641 * 303.02026 * 6 5 3 8 8 O 1.21228 * 119.67695 * 208.85869 * 7 6 5 9 9 N 1.34551 * 120.58750 * 28.87042 * 7 6 5 10 10 C 1.46501 * 119.29674 * 179.48027 * 9 7 6 11 11 C 1.52996 * 109.46983 * 267.82801 * 10 9 7 12 12 C 1.50695 * 115.55560 * 268.81715 * 11 10 9 13 13 H 1.07991 * 120.00090 * 114.47209 * 12 11 10 14 14 C 1.37885 * 119.99729 * 294.47373 * 12 11 10 15 15 N 1.31520 * 119.99534 * 165.57406 * 14 12 11 16 16 Si 1.86799 * 120.00167 * 345.57470 * 14 12 11 17 17 H 1.48500 * 109.46827 * 84.64371 * 16 14 12 18 18 H 1.48491 * 109.47125 * 204.64416 * 16 14 12 19 19 H 1.48495 * 109.47188 * 324.64718 * 16 14 12 20 20 C 1.53005 * 117.49205 * 123.11041 * 11 10 9 21 21 C 1.52999 * 117.49722 * 54.49246 * 11 10 9 22 22 C 1.34453 * 121.38370 * 359.47534 * 9 7 6 23 23 O 1.21226 * 119.67233 * 180.49949 * 22 9 7 24 24 H 1.09000 * 109.46807 * 60.00556 * 1 2 3 25 25 H 1.09005 * 109.47374 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47475 * 300.00055 * 1 2 3 27 27 H 1.08999 * 109.47299 * 239.99424 * 2 1 3 28 28 H 1.09006 * 109.46490 * 119.99706 * 2 1 3 29 29 H 1.00901 * 110.99465 * 300.38745 * 5 3 2 30 30 H 1.09007 * 109.50622 * 62.97808 * 6 5 3 31 31 H 1.08999 * 109.50614 * 183.06412 * 6 5 3 32 32 H 1.08998 * 109.47274 * 27.83271 * 10 9 7 33 33 H 1.08997 * 109.46818 * 147.83033 * 10 9 7 34 34 H 0.97005 * 119.99414 * 180.02562 * 15 14 12 35 35 H 1.08995 * 117.50499 * 0.02562 * 20 11 10 36 36 H 1.09000 * 117.49452 * 145.02469 * 20 11 10 37 37 H 1.09007 * 117.49950 * 214.97455 * 21 11 10 38 38 H 1.09005 * 117.50005 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6077 1.9821 -0.8427 5 7 1.6513 2.1009 1.2564 6 6 2.1959 3.4661 1.3084 7 6 3.6932 3.4107 1.1530 8 8 4.3817 4.2682 1.6632 9 7 4.2727 2.4185 0.4529 10 6 5.7306 2.3986 0.3100 11 6 6.1274 3.1323 -0.9726 12 6 6.2392 2.2726 -2.2052 13 1 5.5555 2.4176 -3.0285 14 6 7.2143 1.3008 -2.2818 15 7 7.1450 0.3714 -3.2097 16 14 8.6339 1.3044 -1.0676 17 1 8.2234 0.6040 0.1758 18 1 9.7996 0.6067 -1.6670 19 1 9.0070 2.7054 -0.7464 20 6 7.0952 4.3101 -0.8421 21 6 5.6189 4.5639 -1.1536 22 6 3.5419 1.4451 -0.1181 23 8 4.0970 0.5609 -0.7343 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.6483 2.1072 1.3660 30 1 1.7676 4.0598 0.5007 31 1 1.9459 3.9213 2.2668 32 1 6.1865 2.8935 1.1675 33 1 6.0767 1.3663 0.2599 34 1 7.8309 -0.3125 -3.2633 35 1 7.4496 4.5620 0.1574 36 1 7.8131 4.4632 -1.6478 37 1 5.3656 4.8841 -2.1644 38 1 5.0014 4.9830 -0.3591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097322115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:04 Heat of formation + Delta-G solvation = -28.981045 kcal Electronic energy + Delta-G solvation = -21636.147751 eV Core-core repulsion = 18480.072926 eV Total energy + Delta-G solvation = -3156.074825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22739 -38.44531 -37.22524 -36.16105 -34.33767 -32.59240 -32.01543 -28.04171 -27.74764 -25.70890 -24.49991 -23.02022 -21.55286 -21.34023 -19.13486 -18.03608 -17.57591 -17.08902 -16.59631 -15.58599 -15.31636 -15.11594 -14.70392 -14.29124 -14.16529 -13.73529 -13.68685 -13.12902 -12.77920 -12.77391 -12.37133 -12.32001 -11.90199 -11.62516 -11.18106 -10.97170 -10.94230 -10.69766 -10.50118 -10.35432 -10.07632 -9.73153 -9.56703 -9.00493 -8.93932 -8.83048 -8.60848 -8.26051 -6.02654 -3.98431 2.00609 2.98158 3.13691 3.34055 3.43787 3.50927 3.91798 4.09119 4.50406 4.62037 4.74772 4.93296 5.00617 5.05652 5.24672 5.31917 5.37482 5.43745 5.63221 5.79092 5.92874 5.98632 6.01442 6.07574 6.14157 6.26893 6.34106 6.38308 6.53870 6.67859 6.78603 6.86939 7.08037 7.19814 7.50752 7.82006 7.97731 8.35366 8.56866 8.99642 9.62775 11.09745 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.008329 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.043638 B = 3360.973522 C = 4234.163725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C 0.065 3.935 4 H 0.081 0.919 5 N -0.673 5.673 6 C 0.033 3.967 7 C 0.525 3.475 8 O -0.508 6.508 9 N -0.547 5.547 10 C 0.126 3.874 11 C -0.014 4.014 12 C -0.479 4.479 13 H 0.071 0.929 14 C 0.089 3.911 15 N -0.885 5.885 16 Si 0.858 3.142 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.252 1.252 20 C -0.183 4.183 21 C -0.184 4.184 22 C 0.516 3.484 23 O -0.443 6.443 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.358 0.642 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.263 0.737 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 2.941 8.863 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.048 4.048 4 H 0.098 0.902 5 N -0.310 5.310 6 C -0.099 4.099 7 C 0.314 3.686 8 O -0.382 6.382 9 N -0.288 5.288 10 C 0.006 3.994 11 C -0.016 4.016 12 C -0.515 4.515 13 H 0.089 0.911 14 C -0.115 4.115 15 N -0.521 5.521 16 Si 0.685 3.315 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.176 1.176 20 C -0.221 4.221 21 C -0.222 4.222 22 C 0.302 3.698 23 O -0.309 6.309 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.180 0.820 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.400 2.424 9.048 15.540 hybrid contribution 0.237 0.488 -0.089 0.549 sum -12.163 2.912 8.959 15.385 Atomic orbital electron populations 1.21796 0.95253 1.02375 1.01500 1.21440 0.95665 0.92889 1.04604 1.21915 0.92203 0.98541 0.92144 0.90179 1.60881 1.18452 1.16295 1.35352 1.22325 0.91274 0.91300 1.04956 1.20689 0.90573 0.80599 0.76727 1.90703 1.64717 1.36978 1.45781 1.46684 1.10547 1.24263 1.47314 1.21829 0.76364 1.03089 0.98168 1.19707 0.99929 0.87138 0.94838 1.20040 1.16463 1.15541 0.99493 0.91104 1.24810 0.97637 0.93971 0.95067 1.69957 1.33878 1.13254 1.35036 0.87160 0.82956 0.79501 0.81908 1.20286 1.21727 1.17559 1.23049 0.92318 1.06338 1.00415 1.22826 0.97251 1.01447 1.00652 1.20532 0.89018 0.81772 0.78514 1.90896 1.71822 1.33721 1.34489 0.92676 0.91981 0.92566 0.89336 0.90473 0.82036 0.90584 0.86099 0.90994 0.88857 0.92755 0.91148 0.89467 0.90178 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.68 37.16 0.36 -0.88 16 2 C -0.11 -1.27 5.31 -26.73 -0.14 -1.41 16 3 C 0.06 0.85 2.72 -68.80 -0.19 0.66 16 4 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 5 N -0.67 -7.04 6.58 -109.02 -0.72 -7.76 16 6 C 0.03 0.37 6.70 -4.91 -0.03 0.34 16 7 C 0.53 8.89 6.67 -11.11 -0.07 8.81 16 8 O -0.51 -9.79 14.94 5.60 0.08 -9.70 16 9 N -0.55 -10.73 2.43 -115.54 -0.28 -11.01 16 10 C 0.13 2.87 4.37 -4.04 -0.02 2.85 16 11 C -0.01 -0.35 1.07 -155.66 -0.17 -0.52 16 12 C -0.48 -13.63 8.77 -34.44 -0.30 -13.93 16 13 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 14 C 0.09 2.59 5.33 -17.81 -0.09 2.50 16 15 N -0.89 -27.45 13.96 55.43 0.77 -26.68 16 16 Si 0.86 21.83 25.64 -169.99 -4.36 17.47 16 17 H -0.28 -6.94 6.96 56.52 0.39 -6.55 16 18 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.25 -6.06 5.84 56.52 0.33 -5.73 16 20 C -0.18 -4.12 7.73 -26.73 -0.21 -4.32 16 21 C -0.18 -4.03 9.56 -26.73 -0.26 -4.28 16 22 C 0.52 9.86 7.28 -11.15 -0.08 9.78 16 23 O -0.44 -10.48 15.02 5.60 0.08 -10.40 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.37 6.76 -51.93 -0.35 0.02 16 27 H 0.09 1.21 7.67 -51.93 -0.40 0.81 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.36 2.54 7.20 -39.29 -0.28 2.26 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.57 7.01 -51.93 -0.36 1.21 16 33 H 0.09 2.33 5.69 -51.93 -0.30 2.04 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 36 H 0.09 1.99 8.09 -51.93 -0.42 1.57 16 37 H 0.08 1.73 8.14 -51.92 -0.42 1.31 16 38 H 0.08 1.61 5.62 -51.93 -0.29 1.31 16 LS Contribution 303.10 15.07 4.57 4.57 Total: -1.00 -33.89 303.10 -6.47 -40.36 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.42 Total: 3.57 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.20 Total: -0.41 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.22 Total: -45.46 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.17 Total: -20.10 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.36 Total: 17.47 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.89 -6.47 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097322115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.380 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds