Wall clock time and date at job start Mon Mar 30 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 H 1.09003 * 109.54399 * 304.88070 * 3 2 1 5 5 N 1.47073 * 109.51169 * 64.99700 * 3 2 1 6 6 C 1.47066 * 110.36350 * 176.88760 * 5 3 2 7 7 C 1.50645 * 109.28641 * 303.02026 * 6 5 3 8 8 O 1.21228 * 119.67695 * 208.85869 * 7 6 5 9 9 N 1.34551 * 120.58750 * 28.87042 * 7 6 5 10 10 C 1.46501 * 119.29674 * 179.48027 * 9 7 6 11 11 C 1.52996 * 109.46983 * 267.82801 * 10 9 7 12 12 C 1.50695 * 115.55560 * 268.81715 * 11 10 9 13 13 H 1.07991 * 120.00090 * 114.47209 * 12 11 10 14 14 C 1.37885 * 119.99729 * 294.47373 * 12 11 10 15 15 N 1.31520 * 119.99534 * 165.57406 * 14 12 11 16 16 Si 1.86799 * 120.00167 * 345.57470 * 14 12 11 17 17 H 1.48500 * 109.46827 * 84.64371 * 16 14 12 18 18 H 1.48491 * 109.47125 * 204.64416 * 16 14 12 19 19 H 1.48495 * 109.47188 * 324.64718 * 16 14 12 20 20 C 1.53005 * 117.49205 * 123.11041 * 11 10 9 21 21 C 1.52999 * 117.49722 * 54.49246 * 11 10 9 22 22 C 1.34453 * 121.38370 * 359.47534 * 9 7 6 23 23 O 1.21226 * 119.67233 * 180.49949 * 22 9 7 24 24 H 1.09000 * 109.46807 * 60.00556 * 1 2 3 25 25 H 1.09005 * 109.47374 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47475 * 300.00055 * 1 2 3 27 27 H 1.08999 * 109.47299 * 239.99424 * 2 1 3 28 28 H 1.09006 * 109.46490 * 119.99706 * 2 1 3 29 29 H 1.00901 * 110.99465 * 300.38745 * 5 3 2 30 30 H 1.09007 * 109.50622 * 62.97808 * 6 5 3 31 31 H 1.08999 * 109.50614 * 183.06412 * 6 5 3 32 32 H 1.08998 * 109.47274 * 27.83271 * 10 9 7 33 33 H 1.08997 * 109.46818 * 147.83033 * 10 9 7 34 34 H 0.97005 * 119.99414 * 180.02562 * 15 14 12 35 35 H 1.08995 * 117.50499 * 0.02562 * 20 11 10 36 36 H 1.09000 * 117.49452 * 145.02469 * 20 11 10 37 37 H 1.09007 * 117.49950 * 214.97455 * 21 11 10 38 38 H 1.09005 * 117.50005 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6077 1.9821 -0.8427 5 7 1.6513 2.1009 1.2564 6 6 2.1959 3.4661 1.3084 7 6 3.6932 3.4107 1.1530 8 8 4.3817 4.2682 1.6632 9 7 4.2727 2.4185 0.4529 10 6 5.7306 2.3986 0.3100 11 6 6.1274 3.1323 -0.9726 12 6 6.2392 2.2726 -2.2052 13 1 5.5555 2.4176 -3.0285 14 6 7.2143 1.3008 -2.2818 15 7 7.1450 0.3714 -3.2097 16 14 8.6339 1.3044 -1.0676 17 1 8.2234 0.6040 0.1758 18 1 9.7996 0.6067 -1.6670 19 1 9.0070 2.7054 -0.7464 20 6 7.0952 4.3101 -0.8421 21 6 5.6189 4.5639 -1.1536 22 6 3.5419 1.4451 -0.1181 23 8 4.0970 0.5609 -0.7343 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.6483 2.1072 1.3660 30 1 1.7676 4.0598 0.5007 31 1 1.9459 3.9213 2.2668 32 1 6.1865 2.8935 1.1675 33 1 6.0767 1.3663 0.2599 34 1 7.8309 -0.3125 -3.2633 35 1 7.4496 4.5620 0.1574 36 1 7.8131 4.4632 -1.6478 37 1 5.3656 4.8841 -2.1644 38 1 5.0014 4.9830 -0.3591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097322115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:04 Heat of formation + Delta-G solvation = -55.208145 kcal Electronic energy + Delta-G solvation = -21637.285043 eV Core-core repulsion = 18480.072926 eV Total energy + Delta-G solvation = -3157.212117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.62941 -39.89620 -38.79452 -37.54818 -35.81563 -34.26379 -33.54836 -29.46041 -28.93431 -27.66633 -25.80670 -24.38133 -23.34918 -22.40497 -21.03349 -19.36367 -18.88179 -18.60861 -18.26188 -17.16877 -16.78800 -16.38047 -16.31284 -15.63456 -15.45173 -15.32931 -14.92694 -14.85538 -14.48420 -14.10479 -13.78288 -13.50242 -13.33240 -13.05132 -12.78800 -12.59803 -12.36430 -12.19269 -12.02648 -11.81020 -11.77957 -11.46330 -11.09104 -10.97106 -10.71408 -10.48131 -10.34198 -9.78103 -8.29671 -6.28618 0.63243 1.29415 1.33079 1.45375 1.61427 1.83579 2.35901 2.88752 2.93418 2.96888 3.27947 3.55065 3.80560 3.95285 4.06984 4.18582 4.23738 4.28740 4.35540 4.46854 4.52356 4.54925 4.59725 4.75747 4.85267 4.92187 4.98003 5.18074 5.21773 5.24176 5.39384 5.40680 5.48753 5.67767 6.09720 6.24380 6.26638 6.59668 6.70402 6.90128 7.35506 8.86761 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.008329 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.043638 B = 3360.973522 C = 4234.163725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.078 3.922 4 H 0.099 0.901 5 N -0.666 5.666 6 C 0.044 3.956 7 C 0.518 3.482 8 O -0.532 6.532 9 N -0.558 5.558 10 C 0.133 3.867 11 C -0.037 4.037 12 C -0.472 4.472 13 H 0.022 0.978 14 C 0.034 3.966 15 N -0.936 5.936 16 Si 0.915 3.085 17 H -0.274 1.274 18 H -0.290 1.290 19 H -0.225 1.225 20 C -0.174 4.174 21 C -0.165 4.165 22 C 0.507 3.493 23 O -0.506 6.506 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.385 0.615 30 H 0.106 0.894 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.263 0.737 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.625 4.945 11.309 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.035 4.035 4 H 0.117 0.883 5 N -0.307 5.307 6 C -0.087 4.087 7 C 0.310 3.690 8 O -0.407 6.407 9 N -0.300 5.300 10 C 0.011 3.989 11 C -0.039 4.039 12 C -0.510 4.510 13 H 0.040 0.960 14 C -0.164 4.164 15 N -0.575 5.575 16 Si 0.739 3.261 17 H -0.200 1.200 18 H -0.217 1.217 19 H -0.147 1.147 20 C -0.212 4.212 21 C -0.202 4.202 22 C 0.296 3.704 23 O -0.376 6.376 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.211 0.789 30 H 0.124 0.876 31 H 0.172 0.828 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.399 4.477 11.528 18.980 hybrid contribution 0.765 -0.106 -0.873 1.165 sum -13.634 4.371 10.655 17.847 Atomic orbital electron populations 1.21757 0.91758 1.03363 1.03109 1.21405 0.98480 0.91708 1.02771 1.21832 0.87461 0.99965 0.94219 0.88335 1.60781 1.20444 1.16011 1.33425 1.22444 0.86516 0.91939 1.07849 1.21847 0.93055 0.79024 0.75082 1.90684 1.65995 1.37579 1.46409 1.46919 1.09384 1.25550 1.48100 1.21399 0.79188 1.00892 0.97456 1.19554 1.02758 0.87699 0.93860 1.20083 1.14903 1.16149 0.99825 0.95951 1.25600 1.00314 0.93552 0.96977 1.70100 1.35114 1.14553 1.37699 0.86240 0.79408 0.80905 0.79512 1.20000 1.21656 1.14737 1.23081 0.92505 1.04181 1.01464 1.22803 0.97230 0.99077 1.01075 1.21766 0.91506 0.80368 0.76713 1.90870 1.73492 1.35997 1.37263 0.91821 0.91458 0.90067 0.92356 0.91383 0.78914 0.87606 0.82764 0.89960 0.92076 0.92848 0.88979 0.89872 0.90453 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.68 71.98 0.70 -1.19 16 2 C -0.11 -2.39 5.31 30.59 0.16 -2.23 16 3 C 0.08 1.90 2.72 44.12 0.12 2.02 16 4 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 5 N -0.67 -11.18 6.58 -498.84 -3.28 -14.46 16 6 C 0.04 0.77 6.70 85.51 0.57 1.34 16 7 C 0.52 16.15 6.67 87.67 0.58 16.73 16 8 O -0.53 -18.96 14.94 -2.87 -0.04 -19.00 16 9 N -0.56 -21.58 2.43 -756.59 -1.84 -23.42 16 10 C 0.13 6.05 4.37 86.38 0.38 6.43 16 11 C -0.04 -1.80 1.07 -52.93 -0.06 -1.86 16 12 C -0.47 -28.02 8.77 25.60 0.22 -27.80 16 13 H 0.02 1.49 8.06 -2.92 -0.02 1.47 16 14 C 0.03 2.08 5.33 84.66 0.45 2.54 16 15 N -0.94 -61.06 13.96 21.45 0.30 -60.76 16 16 Si 0.92 45.96 25.64 68.60 1.76 47.72 16 17 H -0.27 -13.56 6.96 99.48 0.69 -12.87 16 18 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 19 H -0.22 -10.19 5.84 99.48 0.58 -9.61 16 20 C -0.17 -7.52 7.73 30.60 0.24 -7.28 16 21 C -0.16 -6.96 9.56 30.59 0.29 -6.67 16 22 C 0.51 19.59 7.28 87.69 0.64 20.23 16 23 O -0.51 -25.34 15.02 -2.86 -0.04 -25.38 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.08 0.68 6.76 -2.39 -0.02 0.67 16 27 H 0.06 1.67 7.67 -2.39 -0.02 1.65 16 28 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.39 3.29 7.20 -89.69 -0.65 2.65 16 30 H 0.11 1.37 8.14 -2.38 -0.02 1.36 16 31 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 3.51 7.01 -2.39 -0.02 3.50 16 33 H 0.06 3.15 5.69 -2.39 -0.01 3.14 16 34 H 0.26 16.17 8.31 -92.70 -0.77 15.40 16 35 H 0.09 3.60 8.03 -2.39 -0.02 3.58 16 36 H 0.08 3.65 8.09 -2.39 -0.02 3.63 16 37 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 38 H 0.09 3.67 5.62 -2.38 -0.01 3.66 16 Total: -1.00 -79.60 303.10 1.44 -78.16 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.29 Total: 14.87 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 4.30 Total: 2.27 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -4.82 Total: -98.64 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.09 Total: -44.38 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.76 Total: 47.72 kcal Total: -79.60 1.44 -78.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097322115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.956 kcal (2) G-P(sol) polarization free energy of solvation -79.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds