Wall clock time and date at job start Mon Mar 30 2020 04:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86802 * 119.99823 * 2 1 4 4 H 1.48501 * 109.46709 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47039 * 299.99656 * 3 2 1 6 6 H 1.48492 * 109.47384 * 59.99582 * 3 2 1 7 7 C 1.39578 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99848 * 180.02562 * 7 2 1 9 9 N 1.36120 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99745 * 180.02562 * 9 7 2 11 11 O 1.21498 * 119.99987 * 359.97438 * 10 9 7 12 12 C 1.48828 * 119.99617 * 180.02562 * 10 9 7 13 13 O 1.21435 * 120.00519 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99948 * 179.97438 * 12 10 9 15 15 C 1.46496 * 120.00191 * 179.97438 * 14 12 10 16 16 C 1.53008 * 109.47078 * 179.97438 * 15 14 12 17 17 H 1.08997 * 110.44751 * 308.56155 * 16 15 14 18 18 C 1.55086 * 110.46821 * 70.96160 * 16 15 14 19 19 C 1.55920 * 104.59547 * 118.71137 * 18 16 15 20 20 H 1.09003 * 116.53028 * 160.53282 * 19 18 16 21 21 C 1.55932 * 104.49816 * 289.85680 * 19 18 16 22 22 C 1.54587 * 104.74578 * 70.33750 * 21 19 18 23 23 C 1.55925 * 104.64078 * 359.94352 * 22 21 19 24 24 H 1.08998 * 115.92120 * 160.03467 * 23 22 21 25 25 C 1.56949 * 100.65554 * 33.77818 * 23 22 21 26 26 H 0.97001 * 119.99842 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00233 * 359.97438 * 9 7 2 28 28 H 0.97003 * 119.99728 * 0.02562 * 14 12 10 29 29 H 1.09000 * 109.47473 * 60.00130 * 15 14 12 30 30 H 1.08998 * 109.46984 * 299.99635 * 15 14 12 31 31 H 1.09003 * 110.31055 * 359.97438 * 18 16 15 32 32 H 1.09004 * 110.54033 * 237.54320 * 18 16 15 33 33 H 1.08998 * 110.40050 * 311.48684 * 21 19 18 34 34 H 1.08999 * 110.40161 * 189.18796 * 21 19 18 35 35 H 1.08998 * 110.40038 * 118.73738 * 22 21 19 36 36 H 1.09002 * 110.39922 * 241.03828 * 22 21 19 37 37 H 1.09001 * 112.02553 * 63.17170 * 25 23 22 38 38 H 1.08995 * 112.03020 * 189.62078 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.7042 1.3464 -0.0006 5 1 1.8855 2.3964 -1.2126 6 1 1.8854 2.3965 1.2124 7 6 2.0081 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0010 9 7 1.3275 -2.3876 0.0005 10 6 2.0014 -3.5549 0.0016 11 8 3.2164 -3.5548 0.0021 12 6 1.2572 -4.8437 0.0010 13 8 0.0429 -4.8438 0.0001 14 7 1.9311 -6.0110 0.0015 15 6 1.1986 -7.2796 0.0015 16 6 2.1929 -8.4426 0.0015 17 1 2.9242 -8.3183 -0.7971 18 6 2.9056 -8.5468 1.3750 19 6 2.5137 -9.9561 1.9150 20 1 3.1492 -10.3718 2.6971 21 6 0.9983 -9.8339 2.2614 22 6 0.2887 -9.7316 0.8918 23 6 1.4417 -9.8000 -0.1556 24 1 1.1501 -10.0806 -1.1676 25 6 2.4384 -10.7691 0.5729 26 1 -0.4850 0.8401 -0.0004 27 1 0.3575 -2.3876 0.0005 28 1 2.9011 -6.0109 0.0027 29 1 0.5723 -7.3377 -0.8887 30 1 0.5717 -7.3372 0.8913 31 1 2.5460 -7.7683 2.0478 32 1 3.9861 -8.4741 1.2517 33 1 0.8147 -8.9367 2.8524 34 1 0.6591 -10.7187 2.8000 35 1 -0.3979 -10.5672 0.7563 36 1 -0.2454 -8.7849 0.8104 37 1 2.0101 -11.7604 0.7208 38 1 3.4034 -10.8180 0.0685 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111090017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:21 Heat of formation + Delta-G solvation = -79.475346 kcal Electronic energy + Delta-G solvation = -20123.109745 eV Core-core repulsion = 16964.845324 eV Total energy + Delta-G solvation = -3158.264422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68284 -39.25759 -37.15361 -34.77451 -33.96302 -31.41811 -30.58762 -29.90246 -28.41516 -26.06734 -24.72798 -22.46431 -21.63076 -20.28129 -19.35184 -18.59603 -18.23343 -16.91419 -16.57954 -15.99719 -15.33134 -15.03970 -14.81765 -14.55836 -13.91041 -13.74595 -13.41631 -12.78449 -12.68316 -12.44737 -12.16673 -11.77100 -11.67266 -11.48580 -11.43544 -11.21030 -11.18129 -10.88807 -10.71766 -10.50095 -10.40265 -10.36303 -10.31877 -10.02195 -9.72283 -8.67678 -8.25356 -8.21289 -6.66024 -3.98385 2.47410 3.14718 3.16857 3.23569 3.45170 4.06731 4.28572 4.30990 4.31787 4.36383 4.93167 4.98609 5.05121 5.09131 5.16432 5.19943 5.24451 5.28614 5.35716 5.47361 5.62048 5.71558 5.75076 5.84038 5.91844 5.94662 6.02037 6.05081 6.11462 6.14022 6.19391 6.33407 6.83487 7.32188 7.71538 7.90901 8.34687 8.65321 8.97688 9.33405 9.86491 10.48991 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.048292 B = 0.003575 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.666022 B = 7831.099834 C = 8072.097111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.500 5.500 10 C 0.394 3.606 11 O -0.598 6.598 12 C 0.512 3.488 13 O -0.548 6.548 14 N -0.714 5.714 15 C 0.125 3.875 16 C -0.101 4.101 17 H 0.080 0.920 18 C -0.119 4.119 19 C -0.105 4.105 20 H 0.096 0.904 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.094 4.094 24 H 0.099 0.901 25 C -0.124 4.124 26 H 0.280 0.720 27 H 0.405 0.595 28 H 0.409 0.591 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 -18.463 1.757 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.131 0.869 9 N -0.134 5.134 10 C 0.179 3.821 11 O -0.487 6.487 12 C 0.296 3.704 13 O -0.425 6.425 14 N -0.368 5.368 15 C 0.001 3.999 16 C -0.120 4.120 17 H 0.098 0.902 18 C -0.157 4.157 19 C -0.123 4.123 20 H 0.114 0.886 21 C -0.159 4.159 22 C -0.170 4.170 23 C -0.113 4.113 24 H 0.117 0.883 25 C -0.161 4.161 26 H 0.090 0.910 27 H 0.240 0.760 28 H 0.244 0.756 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.963 -18.300 1.764 18.489 hybrid contribution 0.152 0.796 -0.008 0.810 sum 2.115 -17.504 1.755 17.719 Atomic orbital electron populations 1.69497 1.06517 1.29220 1.45505 1.25588 0.95628 1.00467 0.95955 0.85670 0.79872 0.80029 0.78053 1.18716 1.20299 1.20293 1.19929 0.93996 0.81896 1.47805 0.86944 1.41572 1.10487 1.04242 1.57131 1.18994 0.87825 0.84277 0.91035 1.90575 1.12913 1.86669 1.58508 1.20675 0.87495 0.85947 0.76251 1.90682 1.14087 1.88165 1.49591 1.45705 1.11099 1.04719 1.75293 1.21537 0.94310 0.81834 1.02203 1.22508 0.97284 0.93913 0.98285 0.90186 1.22821 1.00036 0.96843 0.95974 1.23583 0.96271 0.95606 0.96844 0.88601 1.22621 0.94810 1.01473 0.97017 1.22800 0.97359 1.02371 0.94472 1.23511 0.95411 0.94021 0.98308 0.88268 1.23594 0.98977 0.97686 0.95837 0.90992 0.76010 0.75566 0.91727 0.91008 0.91064 0.91556 0.91672 0.92160 0.92005 0.90549 0.91397 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.47 13.03 55.53 0.72 -22.74 16 2 C 0.03 0.79 5.51 -17.40 -0.10 0.70 16 3 Si 0.94 20.18 29.56 -169.99 -5.02 15.16 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.50 9.67 -15.15 -0.15 -8.65 16 8 H 0.11 3.19 7.15 -52.49 -0.38 2.82 16 9 N -0.50 -13.54 5.25 -11.59 -0.06 -13.60 16 10 C 0.39 10.07 7.82 -11.87 -0.09 9.98 16 11 O -0.60 -16.18 16.03 5.37 0.09 -16.09 16 12 C 0.51 11.31 7.87 -11.88 -0.09 11.21 16 13 O -0.55 -13.06 16.47 5.42 0.09 -12.97 16 14 N -0.71 -12.35 5.45 -60.93 -0.33 -12.69 16 15 C 0.12 1.73 3.93 -4.04 -0.02 1.71 16 16 C -0.10 -1.07 2.72 -87.95 -0.24 -1.31 16 17 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.12 -1.23 5.76 -24.07 -0.14 -1.37 16 19 C -0.10 -0.92 5.21 -85.27 -0.44 -1.36 16 20 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 21 C -0.12 -1.12 6.20 -24.33 -0.15 -1.27 16 22 C -0.13 -1.24 5.86 -24.33 -0.14 -1.39 16 23 C -0.09 -0.84 4.93 -85.35 -0.42 -1.26 16 24 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 25 C -0.12 -1.00 6.42 -22.37 -0.14 -1.14 16 26 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 27 H 0.40 11.04 7.35 -40.82 -0.30 10.74 16 28 H 0.41 6.71 7.92 -40.82 -0.32 6.39 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.03 6.19 -51.93 -0.32 0.71 16 31 H 0.07 0.84 7.41 -51.93 -0.38 0.46 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.66 7.83 -51.93 -0.41 0.25 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.82 5.44 -51.93 -0.28 0.53 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -30.45 309.85 -7.31 -37.76 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -5.33 Total: 14.66 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -2.12 Total: 5.85 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.33 Total: -49.03 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: 0.18 Total: -29.06 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.45 -7.31 -37.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111090017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.716 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds