Wall clock time and date at job start Mon Mar 30 2020 04:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86802 * 119.99823 * 2 1 4 4 H 1.48501 * 109.46709 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47039 * 299.99656 * 3 2 1 6 6 H 1.48492 * 109.47384 * 59.99582 * 3 2 1 7 7 C 1.39578 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99848 * 180.02562 * 7 2 1 9 9 N 1.36120 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99745 * 180.02562 * 9 7 2 11 11 O 1.21498 * 119.99987 * 359.97438 * 10 9 7 12 12 C 1.48828 * 119.99617 * 180.02562 * 10 9 7 13 13 O 1.21435 * 120.00519 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99948 * 179.97438 * 12 10 9 15 15 C 1.46496 * 120.00191 * 179.97438 * 14 12 10 16 16 C 1.53008 * 109.47078 * 179.97438 * 15 14 12 17 17 H 1.08997 * 110.44751 * 308.56155 * 16 15 14 18 18 C 1.55086 * 110.46821 * 70.96160 * 16 15 14 19 19 C 1.55920 * 104.59547 * 118.71137 * 18 16 15 20 20 H 1.09003 * 116.53028 * 160.53282 * 19 18 16 21 21 C 1.55932 * 104.49816 * 289.85680 * 19 18 16 22 22 C 1.54587 * 104.74578 * 70.33750 * 21 19 18 23 23 C 1.55925 * 104.64078 * 359.94352 * 22 21 19 24 24 H 1.08998 * 115.92120 * 160.03467 * 23 22 21 25 25 C 1.56949 * 100.65554 * 33.77818 * 23 22 21 26 26 H 0.97001 * 119.99842 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00233 * 359.97438 * 9 7 2 28 28 H 0.97003 * 119.99728 * 0.02562 * 14 12 10 29 29 H 1.09000 * 109.47473 * 60.00130 * 15 14 12 30 30 H 1.08998 * 109.46984 * 299.99635 * 15 14 12 31 31 H 1.09003 * 110.31055 * 359.97438 * 18 16 15 32 32 H 1.09004 * 110.54033 * 237.54320 * 18 16 15 33 33 H 1.08998 * 110.40050 * 311.48684 * 21 19 18 34 34 H 1.08999 * 110.40161 * 189.18796 * 21 19 18 35 35 H 1.08998 * 110.40038 * 118.73738 * 22 21 19 36 36 H 1.09002 * 110.39922 * 241.03828 * 22 21 19 37 37 H 1.09001 * 112.02553 * 63.17170 * 25 23 22 38 38 H 1.08995 * 112.03020 * 189.62078 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.7042 1.3464 -0.0006 5 1 1.8855 2.3964 -1.2126 6 1 1.8854 2.3965 1.2124 7 6 2.0081 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0010 9 7 1.3275 -2.3876 0.0005 10 6 2.0014 -3.5549 0.0016 11 8 3.2164 -3.5548 0.0021 12 6 1.2572 -4.8437 0.0010 13 8 0.0429 -4.8438 0.0001 14 7 1.9311 -6.0110 0.0015 15 6 1.1986 -7.2796 0.0015 16 6 2.1929 -8.4426 0.0015 17 1 2.9242 -8.3183 -0.7971 18 6 2.9056 -8.5468 1.3750 19 6 2.5137 -9.9561 1.9150 20 1 3.1492 -10.3718 2.6971 21 6 0.9983 -9.8339 2.2614 22 6 0.2887 -9.7316 0.8918 23 6 1.4417 -9.8000 -0.1556 24 1 1.1501 -10.0806 -1.1676 25 6 2.4384 -10.7691 0.5729 26 1 -0.4850 0.8401 -0.0004 27 1 0.3575 -2.3876 0.0005 28 1 2.9011 -6.0109 0.0027 29 1 0.5723 -7.3377 -0.8887 30 1 0.5717 -7.3372 0.8913 31 1 2.5460 -7.7683 2.0478 32 1 3.9861 -8.4741 1.2517 33 1 0.8147 -8.9367 2.8524 34 1 0.6591 -10.7187 2.8000 35 1 -0.3979 -10.5672 0.7563 36 1 -0.2454 -8.7849 0.8104 37 1 2.0101 -11.7604 0.7208 38 1 3.4034 -10.8180 0.0685 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111090017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:21 Heat of formation + Delta-G solvation = -100.317044 kcal Electronic energy + Delta-G solvation = -20124.013509 eV Core-core repulsion = 16964.845324 eV Total energy + Delta-G solvation = -3159.168186 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68021 -40.92939 -39.08508 -36.56415 -35.70941 -33.47251 -31.66230 -30.71113 -29.23386 -27.91829 -26.09043 -24.03262 -22.59429 -21.41855 -20.70477 -20.36742 -19.49034 -18.59611 -17.75020 -17.32717 -16.87491 -16.62209 -16.28247 -15.88772 -15.66723 -15.24162 -14.83292 -14.43453 -14.02052 -13.69073 -13.43172 -13.12363 -12.98125 -12.58904 -12.55888 -12.42777 -12.26870 -12.12077 -12.08539 -11.84290 -11.68708 -11.61999 -11.55862 -11.17392 -10.78895 -10.28995 -10.24709 -10.17228 -8.67022 -6.12141 0.58858 1.40953 1.45658 1.57111 1.83084 2.29347 2.36278 3.14266 3.25238 3.50146 3.57460 3.63179 4.02298 4.06670 4.08538 4.30939 4.36625 4.43885 4.54012 4.59373 4.65487 4.71078 4.84383 4.99953 5.05119 5.15916 5.20253 5.24496 5.26406 5.29047 5.32945 5.38948 5.44709 5.57118 5.67141 6.15483 6.38147 6.80496 7.01097 7.26772 7.78553 8.49115 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.048292 B = 0.003575 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.666022 B = 7831.099834 C = 8072.097111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.511 5.511 10 C 0.389 3.611 11 O -0.617 6.617 12 C 0.516 3.484 13 O -0.569 6.569 14 N -0.692 5.692 15 C 0.124 3.876 16 C -0.097 4.097 17 H 0.087 0.913 18 C -0.122 4.122 19 C -0.101 4.101 20 H 0.109 0.891 21 C -0.124 4.124 22 C -0.135 4.135 23 C -0.090 4.090 24 H 0.112 0.888 25 C -0.115 4.115 26 H 0.289 0.711 27 H 0.400 0.600 28 H 0.415 0.585 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 -19.602 1.611 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.475 4.475 8 H 0.117 0.883 9 N -0.145 5.145 10 C 0.174 3.826 11 O -0.507 6.507 12 C 0.299 3.701 13 O -0.448 6.448 14 N -0.344 5.344 15 C 0.001 3.999 16 C -0.115 4.115 17 H 0.106 0.894 18 C -0.160 4.160 19 C -0.119 4.119 20 H 0.127 0.873 21 C -0.161 4.161 22 C -0.172 4.172 23 C -0.109 4.109 24 H 0.130 0.870 25 C -0.152 4.152 26 H 0.099 0.901 27 H 0.235 0.765 28 H 0.251 0.749 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.653 -19.482 1.618 19.728 hybrid contribution -0.082 1.056 0.054 1.061 sum 2.571 -18.426 1.672 18.679 Atomic orbital electron populations 1.69562 1.07858 1.30779 1.45188 1.26564 0.96514 1.03518 0.94344 0.84625 0.78262 0.75171 0.78749 1.18731 1.19029 1.19033 1.20029 0.93702 0.83070 1.50738 0.88306 1.41667 1.10225 1.04822 1.57759 1.19634 0.87881 0.85271 0.89838 1.90540 1.13788 1.87301 1.59029 1.20091 0.87012 0.86036 0.76932 1.90672 1.14633 1.88366 1.51160 1.45698 1.11471 1.04574 1.72688 1.21797 0.95033 0.81093 1.01940 1.22510 0.96792 0.93380 0.98852 0.89445 1.22831 1.00319 0.97474 0.95370 1.23625 0.95924 0.94675 0.97720 0.87300 1.22635 0.95368 1.01277 0.96844 1.22806 0.97698 1.01894 0.94845 1.23572 0.95257 0.93001 0.99034 0.86976 1.23566 0.99054 0.97782 0.94813 0.90081 0.76510 0.74860 0.91783 0.91445 0.93126 0.90859 0.93340 0.90894 0.90737 0.92424 0.90061 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.61 13.03 21.76 0.28 -48.32 16 2 C -0.01 -0.27 5.51 85.14 0.47 0.20 16 3 Si 1.01 41.01 29.56 68.60 2.03 43.04 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 7 C -0.35 -19.69 9.67 84.35 0.82 -18.87 16 8 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 9 N -0.51 -28.55 5.25 -308.88 -1.62 -30.17 16 10 C 0.39 20.36 7.82 87.08 0.68 21.04 16 11 O -0.62 -34.02 16.03 -3.71 -0.06 -34.08 16 12 C 0.52 23.17 7.87 87.08 0.69 23.85 16 13 O -0.57 -27.60 16.47 -3.51 -0.06 -27.65 16 14 N -0.69 -23.88 5.45 -465.01 -2.53 -26.41 16 15 C 0.12 3.37 3.93 86.38 0.34 3.71 16 16 C -0.10 -1.90 2.72 -9.06 -0.02 -1.92 16 17 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 18 C -0.12 -2.35 5.76 32.32 0.19 -2.17 16 19 C -0.10 -1.55 5.21 -7.33 -0.04 -1.59 16 20 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 21 C -0.12 -2.09 6.20 32.15 0.20 -1.89 16 22 C -0.14 -2.32 5.86 32.15 0.19 -2.13 16 23 C -0.09 -1.40 4.93 -7.38 -0.04 -1.44 16 24 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 25 C -0.11 -1.49 6.42 33.42 0.21 -1.28 16 26 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 27 H 0.40 22.64 7.35 -92.71 -0.68 21.96 16 28 H 0.41 13.47 7.92 -92.71 -0.73 12.73 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.96 6.19 -2.39 -0.01 1.94 16 31 H 0.05 1.18 7.41 -2.39 -0.02 1.16 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 0.97 7.83 -2.39 -0.02 0.95 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.21 5.44 -2.39 -0.01 1.19 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -65.80 309.85 1.39 -64.40 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.32 Total: 41.70 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 3.68 Total: 17.49 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.87 Total: -104.91 kcal Atomic # 8 Polarization: -61.62 SS G_CDS: -0.12 Total: -61.73 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -65.80 1.39 -64.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111090017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.915 kcal (2) G-P(sol) polarization free energy of solvation -65.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds