Wall clock time and date at job start Mon Mar 30 2020 04:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30841 * 125.89510 * 2 1 4 4 N 1.40088 * 108.20389 * 180.25994 * 3 2 1 5 5 C 1.46499 * 126.04034 * 179.69747 * 4 3 2 6 6 C 1.34953 * 107.92485 * 359.71437 * 4 3 2 7 7 C 1.50699 * 126.12763 * 179.97438 * 6 4 3 8 8 C 1.35311 * 107.74508 * 0.02562 * 6 4 3 9 9 C 1.50702 * 126.04076 * 180.02562 * 8 6 4 10 10 C 1.50704 * 109.47207 * 89.99947 * 9 8 6 11 11 O 1.20826 * 119.99847 * 359.97438 * 10 9 8 12 12 O 1.34229 * 119.99888 * 180.02562 * 10 9 8 13 13 C 1.45206 * 116.99848 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46660 * 329.99611 * 13 12 10 15 15 C 1.52997 * 109.47147 * 89.99847 * 13 12 10 16 16 C 1.50697 * 109.47064 * 210.00247 * 13 12 10 17 17 H 1.07998 * 120.00039 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99815 * 179.97438 * 16 13 12 19 19 N 1.31508 * 119.99915 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99777 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47155 * 89.99872 * 20 18 16 22 22 H 1.48495 * 109.46964 * 209.99990 * 20 18 16 23 23 H 1.48499 * 109.46909 * 330.00049 * 20 18 16 24 24 H 1.09001 * 109.46923 * 270.21039 * 1 2 3 25 25 H 1.08996 * 109.47236 * 30.21375 * 1 2 3 26 26 H 1.09004 * 109.46810 * 150.21760 * 1 2 3 27 27 H 1.09001 * 109.46829 * 270.02046 * 5 4 3 28 28 H 1.09003 * 109.47073 * 30.01678 * 5 4 3 29 29 H 1.09000 * 109.47552 * 150.01994 * 5 4 3 30 30 H 1.08999 * 109.46956 * 270.02405 * 7 6 4 31 31 H 1.09001 * 109.46726 * 30.02347 * 7 6 4 32 32 H 1.09001 * 109.47042 * 150.02252 * 7 6 4 33 33 H 1.08996 * 109.47093 * 329.99700 * 9 8 6 34 34 H 1.08998 * 109.47372 * 209.99558 * 9 8 6 35 35 H 1.09002 * 109.47153 * 179.97438 * 15 13 12 36 36 H 1.09001 * 109.46832 * 60.00119 * 15 13 12 37 37 H 1.09004 * 109.47261 * 300.00100 * 15 13 12 38 38 H 0.97001 * 119.99839 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0060 5 6 4.7899 1.5009 -0.0143 6 6 3.6143 -0.7153 -0.0032 7 6 4.8351 -1.5988 -0.0083 8 6 2.3273 -1.1329 0.0037 9 6 1.8600 -2.5657 0.0095 10 6 1.7108 -3.0398 1.4322 11 8 1.9590 -2.2911 2.3476 12 8 1.3033 -4.2940 1.6825 13 6 1.1826 -4.6821 3.0765 14 1 1.9066 -4.1262 3.6723 15 6 -0.2313 -4.3716 3.5718 16 6 1.4493 -6.1591 3.2116 17 1 1.6854 -6.7474 2.3372 18 6 1.3918 -6.7594 4.4515 19 7 1.1048 -6.0429 5.5163 20 14 1.7216 -8.5905 4.6189 21 1 3.1709 -8.8130 4.8535 22 1 0.9461 -9.1304 5.7643 23 1 1.3099 -9.2835 3.3717 24 1 -0.3633 0.0038 1.0277 25 1 -0.3633 0.8880 -0.5171 26 1 -0.3633 -0.8920 -0.5105 27 1 5.0771 1.7136 -1.0441 28 1 4.5591 2.4345 0.4988 29 1 5.6122 0.9994 0.4960 30 1 5.1239 -1.8136 -1.0371 31 1 5.6539 -1.0899 0.5003 32 1 4.6104 -2.5319 0.5084 33 1 2.5911 -3.1883 -0.5062 34 1 0.8989 -2.6365 -0.4997 35 1 -0.3220 -4.6633 4.6181 36 1 -0.9552 -4.9274 2.9758 37 1 -0.4241 -3.3032 3.4740 38 1 1.0647 -6.4652 6.3886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:36 Heat of formation + Delta-G solvation = -25.231471 kcal Electronic energy + Delta-G solvation = -20365.405834 eV Core-core repulsion = 17209.493603 eV Total energy + Delta-G solvation = -3155.912231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32876 -39.22561 -35.66025 -34.22459 -33.21674 -32.86481 -30.05996 -29.50635 -28.96558 -26.25491 -25.28767 -24.86698 -21.83704 -19.94132 -19.47638 -19.01826 -16.86513 -16.59064 -16.28995 -15.67642 -15.12629 -15.02981 -14.35621 -13.88331 -13.84778 -13.45318 -13.19117 -12.92883 -12.80224 -12.65031 -12.38399 -12.03717 -11.94831 -11.78093 -11.77251 -11.48393 -11.10093 -11.02186 -10.80101 -10.36079 -10.31324 -10.24825 -9.52086 -9.43528 -8.93504 -8.84699 -8.45724 -8.16373 -6.15074 -4.21808 1.92758 2.54034 2.77571 3.17010 3.26080 3.31691 3.36011 3.99235 4.39579 4.47613 4.65626 4.97816 5.00666 5.07541 5.17831 5.24399 5.29817 5.34801 5.44361 5.51418 5.68945 5.81139 5.87783 5.96300 6.04791 6.16842 6.28863 6.70515 6.80543 6.94665 6.98611 7.10263 7.26935 7.64882 7.79101 7.84141 8.01856 8.20526 8.73717 8.98388 9.43830 10.92328 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030799 B = 0.004424 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.901398 B = 6327.471916 C = 6736.159139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.094 3.906 3 N -0.303 5.303 4 N -0.377 5.377 5 C 0.105 3.895 6 C 0.101 3.899 7 C -0.094 4.094 8 C -0.220 4.220 9 C -0.036 4.036 10 C 0.449 3.551 11 O -0.514 6.514 12 O -0.360 6.360 13 C 0.215 3.785 14 H 0.044 0.956 15 C -0.154 4.154 16 C -0.520 4.520 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.911 3.089 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.271 1.271 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.036 0.964 37 H 0.015 0.985 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.021 10.407 -12.750 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 N -0.126 5.126 4 N -0.159 5.159 5 C -0.037 4.037 6 C -0.026 4.026 7 C -0.153 4.153 8 C -0.231 4.231 9 C -0.075 4.075 10 C 0.291 3.709 11 O -0.404 6.404 12 O -0.277 6.277 13 C 0.163 3.837 14 H 0.062 0.938 15 C -0.212 4.212 16 C -0.558 4.558 17 H 0.087 0.913 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.196 1.196 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.035 0.965 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.233 11.956 -12.231 17.887 hybrid contribution 0.248 -1.628 0.453 1.708 sum 5.481 10.329 -11.777 16.596 Atomic orbital electron populations 1.20205 0.86823 1.02962 1.03365 1.22113 0.96744 0.90151 0.98216 1.77252 0.86077 1.22407 1.26822 1.48167 1.05507 1.04024 1.58241 1.21768 0.84109 0.94910 1.02907 1.20761 0.96814 0.84514 1.00546 1.20493 0.92912 0.98799 1.03057 1.19072 0.91412 0.94735 1.17885 1.19510 1.03959 0.91581 0.92402 1.23426 0.74133 0.81495 0.91864 1.90594 1.46754 1.55840 1.47178 1.86479 1.76418 1.28735 1.36060 1.20568 0.94800 0.95488 0.72843 0.93774 1.22145 0.97648 0.96763 1.04610 1.21045 1.48654 0.91934 0.94136 0.91340 1.24890 0.94855 0.99047 0.95222 1.69906 1.47980 1.35952 0.98919 0.86293 0.78310 0.83767 0.77874 1.20463 1.20991 1.19571 0.90232 0.91041 0.90379 0.91040 0.89465 0.89688 0.90101 0.91089 0.89349 0.87982 0.87742 0.88413 0.94473 0.96550 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.26 36.01 0.37 -0.60 16 2 C 0.09 1.50 7.22 -82.40 -0.59 0.91 16 3 N -0.30 -4.97 12.58 33.67 0.42 -4.55 16 4 N -0.38 -5.35 4.01 -63.88 -0.26 -5.61 16 5 C 0.10 0.94 11.27 59.85 0.67 1.62 16 6 C 0.10 1.46 6.93 -82.26 -0.57 0.89 16 7 C -0.09 -1.03 9.72 36.01 0.35 -0.68 16 8 C -0.22 -3.50 4.59 -105.05 -0.48 -3.98 16 9 C -0.04 -0.55 5.72 -29.03 -0.17 -0.71 16 10 C 0.45 9.48 7.92 36.01 0.29 9.76 16 11 O -0.51 -12.57 15.25 -18.75 -0.29 -12.85 16 12 O -0.36 -8.62 9.86 -39.25 -0.39 -9.01 16 13 C 0.22 5.87 2.56 -27.89 -0.07 5.80 16 14 H 0.04 1.33 7.16 -51.93 -0.37 0.96 16 15 C -0.15 -3.98 9.33 37.16 0.35 -3.63 16 16 C -0.52 -14.67 8.90 -34.44 -0.31 -14.98 16 17 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 20 Si 0.91 21.10 29.54 -169.99 -5.02 16.07 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 0.86 7.25 -51.93 -0.38 0.49 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.60 7.05 -51.93 -0.37 0.23 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.65 7.08 -51.93 -0.37 0.28 16 32 H 0.09 1.09 7.77 -51.93 -0.40 0.69 16 33 H 0.10 1.32 7.77 -51.93 -0.40 0.92 16 34 H 0.10 1.37 7.25 -51.93 -0.38 0.99 16 35 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -34.64 324.13 -5.76 -40.40 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.48 Total: -0.44 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.26 Total: -4.00 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.79 Total: -35.06 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.67 Total: -21.86 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.64 -5.76 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.168 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds