Wall clock time and date at job start Mon Mar 30 2020 04:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30841 * 125.89510 * 2 1 4 4 N 1.40088 * 108.20389 * 180.25994 * 3 2 1 5 5 C 1.46499 * 126.04034 * 179.69747 * 4 3 2 6 6 C 1.34953 * 107.92485 * 359.71437 * 4 3 2 7 7 C 1.50699 * 126.12763 * 179.97438 * 6 4 3 8 8 C 1.35311 * 107.74508 * 0.02562 * 6 4 3 9 9 C 1.50702 * 126.04076 * 180.02562 * 8 6 4 10 10 C 1.50704 * 109.47207 * 89.99947 * 9 8 6 11 11 O 1.20826 * 119.99847 * 359.97438 * 10 9 8 12 12 O 1.34229 * 119.99888 * 180.02562 * 10 9 8 13 13 C 1.45206 * 116.99848 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46660 * 329.99611 * 13 12 10 15 15 C 1.52997 * 109.47147 * 89.99847 * 13 12 10 16 16 C 1.50697 * 109.47064 * 210.00247 * 13 12 10 17 17 H 1.07998 * 120.00039 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99815 * 179.97438 * 16 13 12 19 19 N 1.31508 * 119.99915 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99777 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47155 * 89.99872 * 20 18 16 22 22 H 1.48495 * 109.46964 * 209.99990 * 20 18 16 23 23 H 1.48499 * 109.46909 * 330.00049 * 20 18 16 24 24 H 1.09001 * 109.46923 * 270.21039 * 1 2 3 25 25 H 1.08996 * 109.47236 * 30.21375 * 1 2 3 26 26 H 1.09004 * 109.46810 * 150.21760 * 1 2 3 27 27 H 1.09001 * 109.46829 * 270.02046 * 5 4 3 28 28 H 1.09003 * 109.47073 * 30.01678 * 5 4 3 29 29 H 1.09000 * 109.47552 * 150.01994 * 5 4 3 30 30 H 1.08999 * 109.46956 * 270.02405 * 7 6 4 31 31 H 1.09001 * 109.46726 * 30.02347 * 7 6 4 32 32 H 1.09001 * 109.47042 * 150.02252 * 7 6 4 33 33 H 1.08996 * 109.47093 * 329.99700 * 9 8 6 34 34 H 1.08998 * 109.47372 * 209.99558 * 9 8 6 35 35 H 1.09002 * 109.47153 * 179.97438 * 15 13 12 36 36 H 1.09001 * 109.46832 * 60.00119 * 15 13 12 37 37 H 1.09004 * 109.47261 * 300.00100 * 15 13 12 38 38 H 0.97001 * 119.99839 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0060 5 6 4.7899 1.5009 -0.0143 6 6 3.6143 -0.7153 -0.0032 7 6 4.8351 -1.5988 -0.0083 8 6 2.3273 -1.1329 0.0037 9 6 1.8600 -2.5657 0.0095 10 6 1.7108 -3.0398 1.4322 11 8 1.9590 -2.2911 2.3476 12 8 1.3033 -4.2940 1.6825 13 6 1.1826 -4.6821 3.0765 14 1 1.9066 -4.1262 3.6723 15 6 -0.2313 -4.3716 3.5718 16 6 1.4493 -6.1591 3.2116 17 1 1.6854 -6.7474 2.3372 18 6 1.3918 -6.7594 4.4515 19 7 1.1048 -6.0429 5.5163 20 14 1.7216 -8.5905 4.6189 21 1 3.1709 -8.8130 4.8535 22 1 0.9461 -9.1304 5.7643 23 1 1.3099 -9.2835 3.3717 24 1 -0.3633 0.0038 1.0277 25 1 -0.3633 0.8880 -0.5171 26 1 -0.3633 -0.8920 -0.5105 27 1 5.0771 1.7136 -1.0441 28 1 4.5591 2.4345 0.4988 29 1 5.6122 0.9994 0.4960 30 1 5.1239 -1.8136 -1.0371 31 1 5.6539 -1.0899 0.5003 32 1 4.6104 -2.5319 0.5084 33 1 2.5911 -3.1883 -0.5062 34 1 0.8989 -2.6365 -0.4997 35 1 -0.3220 -4.6633 4.6181 36 1 -0.9552 -4.9274 2.9758 37 1 -0.4241 -3.3032 3.4740 38 1 1.0647 -6.4652 6.3886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:35 Heat of formation + Delta-G solvation = -46.794839 kcal Electronic energy + Delta-G solvation = -20366.340891 eV Core-core repulsion = 17209.493603 eV Total energy + Delta-G solvation = -3156.847289 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.43709 -40.99938 -37.52921 -35.29541 -35.25287 -34.02710 -31.78412 -30.68143 -30.18196 -27.45540 -27.30132 -25.91937 -23.65127 -21.61953 -20.56078 -20.32726 -18.76826 -18.40930 -17.44470 -17.17102 -16.74102 -16.57111 -16.06014 -15.07188 -14.87938 -14.76981 -14.35160 -14.14287 -14.08834 -13.95235 -13.69123 -13.41841 -13.24019 -13.11242 -12.94104 -12.82816 -12.78088 -12.75909 -12.60426 -12.34833 -12.12105 -11.54326 -11.46067 -11.26420 -10.93671 -10.57225 -9.99969 -9.29388 -8.25819 -6.42807 0.84524 1.43193 1.45897 1.49545 1.51680 1.58835 1.64934 2.28432 2.56441 3.04973 3.51966 3.69744 3.99163 4.08678 4.21291 4.29949 4.37766 4.39375 4.52772 4.58790 4.61852 4.64997 4.70411 4.78924 4.81513 4.88432 4.97296 5.02425 5.09851 5.22623 5.23828 5.52021 5.66214 5.72492 5.97182 6.13282 6.18066 6.64371 6.73279 7.10054 7.31044 8.81877 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030799 B = 0.004424 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.901398 B = 6327.471916 C = 6736.159139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.077 3.923 3 N -0.335 5.335 4 N -0.380 5.380 5 C 0.093 3.907 6 C 0.100 3.900 7 C -0.093 4.093 8 C -0.253 4.253 9 C -0.021 4.021 10 C 0.446 3.554 11 O -0.552 6.552 12 O -0.364 6.364 13 C 0.218 3.782 14 H 0.003 0.997 15 C -0.141 4.141 16 C -0.546 4.546 17 H 0.070 0.930 18 C 0.015 3.985 19 N -0.920 5.920 20 Si 0.983 3.017 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.260 1.260 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.020 0.980 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.949 9.567 -14.330 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 N -0.158 5.158 4 N -0.162 5.162 5 C -0.047 4.047 6 C -0.029 4.029 7 C -0.151 4.151 8 C -0.264 4.264 9 C -0.059 4.059 10 C 0.291 3.709 11 O -0.443 6.443 12 O -0.281 6.281 13 C 0.165 3.835 14 H 0.020 0.980 15 C -0.199 4.199 16 C -0.583 4.583 17 H 0.088 0.912 18 C -0.185 4.185 19 N -0.558 5.558 20 Si 0.806 3.194 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.184 1.184 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.165 11.150 -13.835 18.808 hybrid contribution 0.040 -1.234 0.940 1.551 sum 6.205 9.916 -12.895 17.410 Atomic orbital electron populations 1.20288 0.85505 1.04657 1.02901 1.22570 0.97972 0.90269 0.98012 1.77176 0.87413 1.23195 1.28041 1.48591 1.05854 1.04597 1.57114 1.22173 0.83015 0.94631 1.04873 1.21331 0.97643 0.85120 0.98809 1.20613 0.91982 0.97423 1.05074 1.19281 0.92316 0.94763 1.20050 1.19603 1.06266 0.91783 0.88237 1.24650 0.72325 0.79934 0.94004 1.90575 1.48326 1.56410 1.49038 1.86477 1.77100 1.30656 1.33868 1.20260 0.94145 0.94933 0.74181 0.97964 1.21969 0.97362 0.97117 1.03465 1.21328 1.49803 0.92449 0.94755 0.91173 1.25855 0.93992 1.04075 0.94538 1.70035 1.48138 1.38095 0.99503 0.85175 0.78400 0.77498 0.78301 1.19721 1.20264 1.18432 0.91620 0.89526 0.88595 0.88646 0.89295 0.87514 0.86968 0.89254 0.90998 0.85132 0.85114 0.90364 0.93364 0.96060 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 10.26 71.24 0.73 -1.17 16 2 C 0.08 2.43 7.22 43.10 0.31 2.75 16 3 N -0.34 -10.86 12.58 -47.38 -0.60 -11.46 16 4 N -0.38 -10.27 4.01 -356.03 -1.43 -11.70 16 5 C 0.09 1.48 11.27 127.77 1.44 2.92 16 6 C 0.10 2.74 6.93 41.40 0.29 3.02 16 7 C -0.09 -1.81 9.72 71.24 0.69 -1.12 16 8 C -0.25 -7.79 4.59 -20.14 -0.09 -7.89 16 9 C -0.02 -0.61 5.72 29.10 0.17 -0.44 16 10 C 0.45 18.90 7.92 71.24 0.56 19.47 16 11 O -0.55 -27.73 15.25 21.96 0.34 -27.39 16 12 O -0.36 -17.54 9.86 -51.40 -0.51 -18.05 16 13 C 0.22 12.17 2.56 29.85 0.08 12.25 16 14 H 0.00 0.16 7.16 -2.39 -0.02 0.14 16 15 C -0.14 -7.45 9.33 71.98 0.67 -6.78 16 16 C -0.55 -31.06 8.90 25.60 0.23 -30.83 16 17 H 0.07 3.87 7.81 -2.91 -0.02 3.84 16 18 C 0.01 0.82 5.30 84.66 0.45 1.26 16 19 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 20 Si 0.98 42.73 29.54 68.60 2.03 44.75 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.10 2.00 7.25 -2.38 -0.02 1.98 16 27 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.11 1.21 7.05 -2.39 -0.02 1.20 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.39 7.08 -2.39 -0.02 1.38 16 32 H 0.07 1.67 7.77 -2.39 -0.02 1.65 16 33 H 0.13 3.06 7.77 -2.39 -0.02 3.05 16 34 H 0.13 3.12 7.25 -2.39 -0.02 3.10 16 35 H 0.08 4.43 6.07 -2.39 -0.01 4.41 16 36 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -76.53 324.13 6.65 -69.88 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.05 Total: 13.70 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 5.52 Total: -6.55 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -1.78 Total: -76.34 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.17 Total: -45.44 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -76.53 6.65 -69.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.086 kcal (2) G-P(sol) polarization free energy of solvation -76.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds