Wall clock time and date at job start Mon Mar 30 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 125.89375 * 2 1 4 4 N 1.40087 * 108.20037 * 179.97438 * 3 2 1 5 5 C 1.46504 * 126.03477 * 179.97438 * 4 3 2 6 6 C 1.34939 * 107.93005 * 0.02562 * 4 3 2 7 7 C 1.50695 * 126.13107 * 179.97438 * 6 4 3 8 8 C 1.35315 * 107.74580 * 359.97438 * 6 4 3 9 9 C 1.50695 * 126.04388 * 179.73639 * 8 6 4 10 10 C 1.50704 * 109.47305 * 90.00183 * 9 8 6 11 11 O 1.20830 * 119.99439 * 0.02562 * 10 9 8 12 12 O 1.34226 * 120.00093 * 180.02562 * 10 9 8 13 13 C 1.45205 * 116.99593 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47003 * 30.00216 * 13 12 10 15 15 C 1.52997 * 109.46944 * 269.99889 * 13 12 10 16 16 C 1.50706 * 109.46757 * 150.00116 * 13 12 10 17 17 H 1.07992 * 119.99996 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99759 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99804 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00223 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46477 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.46953 * 119.99981 * 20 18 16 23 23 H 1.48500 * 109.47039 * 240.00357 * 20 18 16 24 24 H 1.08997 * 109.47372 * 269.99752 * 1 2 3 25 25 H 1.09003 * 109.47264 * 30.00203 * 1 2 3 26 26 H 1.08999 * 109.46975 * 150.00349 * 1 2 3 27 27 H 1.08992 * 109.47485 * 270.02783 * 5 4 3 28 28 H 1.09007 * 109.46799 * 30.02969 * 5 4 3 29 29 H 1.08995 * 109.47116 * 150.02436 * 5 4 3 30 30 H 1.09001 * 109.47414 * 270.02381 * 7 6 4 31 31 H 1.09002 * 109.47392 * 30.02504 * 7 6 4 32 32 H 1.09000 * 109.47238 * 150.02427 * 7 6 4 33 33 H 1.09004 * 109.47928 * 210.00342 * 9 8 6 34 34 H 1.09004 * 109.47452 * 330.00519 * 9 8 6 35 35 H 1.09005 * 109.47258 * 300.00360 * 15 13 12 36 36 H 1.08998 * 109.47319 * 59.99938 * 15 13 12 37 37 H 1.09004 * 109.47310 * 180.02562 * 15 13 12 38 38 H 0.96998 * 119.99747 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7899 1.5009 0.0003 6 6 3.6143 -0.7152 0.0004 7 6 4.8351 -1.5987 0.0003 8 6 2.3272 -1.1330 0.0002 9 6 1.8600 -2.5656 -0.0056 10 6 1.7062 -3.0497 1.4132 11 8 1.9504 -2.3072 2.3346 12 8 1.2978 -4.3056 1.6534 13 6 1.1715 -4.7031 3.0442 14 1 0.9157 -3.8330 3.6489 15 6 2.4988 -5.2892 3.5297 16 6 0.0867 -5.7412 3.1734 17 1 -0.4539 -6.0691 2.2979 18 6 -0.2155 -6.2724 4.4093 19 7 0.4426 -5.8726 5.4756 20 14 -1.5606 -7.5586 4.5697 21 1 -2.1443 -7.8337 3.2321 22 1 -0.9852 -8.8099 5.1250 23 1 -2.6211 -7.0551 5.4791 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 5.0827 1.7156 -1.0274 28 1 4.5562 2.4336 0.5139 29 1 5.6093 0.9985 0.5142 30 1 5.1298 -1.8113 -1.0274 31 1 5.6511 -1.0911 0.5146 32 1 4.6075 -2.5330 0.5136 33 1 0.9005 -2.6330 -0.5185 34 1 2.5928 -3.1847 -0.5232 35 1 2.7546 -6.1593 2.9249 36 1 3.2834 -4.5384 3.4362 37 1 2.4039 -5.5880 4.5737 38 1 0.2302 -6.2466 6.3450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:38 Heat of formation + Delta-G solvation = -25.163161 kcal Electronic energy + Delta-G solvation = -20365.638286 eV Core-core repulsion = 17209.729017 eV Total energy + Delta-G solvation = -3155.909269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33154 -39.22725 -35.66229 -34.22366 -33.21491 -32.87232 -30.06973 -29.49483 -28.96818 -26.26632 -25.29126 -24.86624 -21.83896 -19.94914 -19.46604 -19.02732 -16.86577 -16.63678 -16.22313 -15.66758 -15.17571 -15.05382 -14.34824 -13.91375 -13.77110 -13.44123 -13.20394 -12.99426 -12.80756 -12.61931 -12.26663 -12.21937 -11.89261 -11.86087 -11.68169 -11.49328 -11.11346 -11.02721 -10.78450 -10.36436 -10.30913 -10.24580 -9.52574 -9.43604 -8.93482 -8.84133 -8.45814 -8.16594 -6.14990 -4.21490 1.92287 2.53967 2.77770 3.16846 3.25748 3.32597 3.37885 3.99303 4.39887 4.47403 4.64369 4.96574 5.00138 5.07011 5.18080 5.23978 5.29924 5.34380 5.41930 5.52232 5.70066 5.79080 5.87889 5.97877 6.06321 6.17546 6.28227 6.68816 6.80755 6.92374 6.97305 7.09790 7.26134 7.65099 7.78481 7.84279 8.01537 8.20334 8.74107 8.98617 9.44216 10.92506 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032995 B = 0.004372 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.415019 B = 6402.370537 C = 6786.668137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.095 3.905 3 N -0.303 5.303 4 N -0.378 5.378 5 C 0.105 3.895 6 C 0.100 3.900 7 C -0.093 4.093 8 C -0.219 4.219 9 C -0.036 4.036 10 C 0.449 3.551 11 O -0.514 6.514 12 O -0.360 6.360 13 C 0.215 3.785 14 H 0.045 0.955 15 C -0.153 4.153 16 C -0.518 4.518 17 H 0.069 0.931 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.910 3.090 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.014 0.986 37 H 0.098 0.902 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 9.699 -12.665 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 N -0.126 5.126 4 N -0.160 5.160 5 C -0.037 4.037 6 C -0.028 4.028 7 C -0.152 4.152 8 C -0.231 4.231 9 C -0.075 4.075 10 C 0.291 3.709 11 O -0.404 6.404 12 O -0.277 6.277 13 C 0.162 3.838 14 H 0.063 0.937 15 C -0.211 4.211 16 C -0.557 4.557 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.528 5.528 20 Si 0.738 3.262 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.116 0.884 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.750 11.234 -12.150 18.273 hybrid contribution -0.479 -1.395 0.460 1.545 sum 7.271 9.839 -11.690 16.922 Atomic orbital electron populations 1.20216 0.86755 1.02985 1.03466 1.22127 0.96784 0.90125 0.98088 1.77260 0.86052 1.22399 1.26844 1.48163 1.05521 1.04007 1.58260 1.21764 0.84102 0.94915 1.02903 1.20742 0.96784 0.84534 1.00695 1.20479 0.92939 0.98737 1.03022 1.19075 0.91396 0.94743 1.17838 1.19514 1.03981 0.91491 0.92475 1.23427 0.74240 0.81394 0.91858 1.90595 1.46580 1.56569 1.46623 1.86478 1.76360 1.28592 1.36249 1.20580 0.94611 0.95557 0.73019 0.93707 1.22146 0.95938 0.98403 1.04638 1.21088 1.17879 1.22339 0.94348 0.91255 1.24895 0.96910 0.97047 0.95201 1.69917 1.40769 1.43110 0.99013 0.86238 0.81049 0.80630 0.78333 1.19441 1.20773 1.20788 0.90138 0.91046 0.90329 0.91047 0.89459 0.89717 0.90117 0.91105 0.89475 0.87649 0.88065 0.94502 0.96663 0.88383 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.26 36.01 0.37 -0.63 16 2 C 0.09 1.53 7.22 -82.40 -0.59 0.93 16 3 N -0.30 -4.99 12.58 33.67 0.42 -4.57 16 4 N -0.38 -5.33 4.01 -63.89 -0.26 -5.58 16 5 C 0.10 0.93 11.27 59.85 0.67 1.61 16 6 C 0.10 1.43 6.93 -82.27 -0.57 0.86 16 7 C -0.09 -0.99 9.72 36.00 0.35 -0.64 16 8 C -0.22 -3.49 4.59 -105.06 -0.48 -3.97 16 9 C -0.04 -0.55 5.72 -29.04 -0.17 -0.72 16 10 C 0.45 9.47 7.92 36.01 0.29 9.76 16 11 O -0.51 -12.56 15.25 -18.75 -0.29 -12.84 16 12 O -0.36 -8.62 9.86 -39.25 -0.39 -9.00 16 13 C 0.21 5.85 2.56 -27.88 -0.07 5.78 16 14 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 15 C -0.15 -3.93 9.33 37.16 0.35 -3.59 16 16 C -0.52 -14.68 8.90 -34.44 -0.31 -14.98 16 17 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 20 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 0.90 7.25 -51.93 -0.38 0.52 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.58 7.05 -51.93 -0.37 0.22 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.63 7.08 -51.93 -0.37 0.26 16 32 H 0.09 1.03 7.78 -51.93 -0.40 0.63 16 33 H 0.11 1.40 7.25 -51.93 -0.38 1.03 16 34 H 0.10 1.29 7.78 -51.93 -0.40 0.89 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -34.70 324.14 -5.76 -40.46 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.49 Total: -0.57 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.26 Total: -3.99 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.79 Total: -35.08 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.67 Total: -21.85 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.70 -5.76 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.298 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds