Wall clock time and date at job start Mon Mar 30 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 125.89375 * 2 1 4 4 N 1.40087 * 108.20037 * 179.97438 * 3 2 1 5 5 C 1.46504 * 126.03477 * 179.97438 * 4 3 2 6 6 C 1.34939 * 107.93005 * 0.02562 * 4 3 2 7 7 C 1.50695 * 126.13107 * 179.97438 * 6 4 3 8 8 C 1.35315 * 107.74580 * 359.97438 * 6 4 3 9 9 C 1.50695 * 126.04388 * 179.73639 * 8 6 4 10 10 C 1.50704 * 109.47305 * 90.00183 * 9 8 6 11 11 O 1.20830 * 119.99439 * 0.02562 * 10 9 8 12 12 O 1.34226 * 120.00093 * 180.02562 * 10 9 8 13 13 C 1.45205 * 116.99593 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47003 * 30.00216 * 13 12 10 15 15 C 1.52997 * 109.46944 * 269.99889 * 13 12 10 16 16 C 1.50706 * 109.46757 * 150.00116 * 13 12 10 17 17 H 1.07992 * 119.99996 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99759 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99804 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00223 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46477 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.46953 * 119.99981 * 20 18 16 23 23 H 1.48500 * 109.47039 * 240.00357 * 20 18 16 24 24 H 1.08997 * 109.47372 * 269.99752 * 1 2 3 25 25 H 1.09003 * 109.47264 * 30.00203 * 1 2 3 26 26 H 1.08999 * 109.46975 * 150.00349 * 1 2 3 27 27 H 1.08992 * 109.47485 * 270.02783 * 5 4 3 28 28 H 1.09007 * 109.46799 * 30.02969 * 5 4 3 29 29 H 1.08995 * 109.47116 * 150.02436 * 5 4 3 30 30 H 1.09001 * 109.47414 * 270.02381 * 7 6 4 31 31 H 1.09002 * 109.47392 * 30.02504 * 7 6 4 32 32 H 1.09000 * 109.47238 * 150.02427 * 7 6 4 33 33 H 1.09004 * 109.47928 * 210.00342 * 9 8 6 34 34 H 1.09004 * 109.47452 * 330.00519 * 9 8 6 35 35 H 1.09005 * 109.47258 * 300.00360 * 15 13 12 36 36 H 1.08998 * 109.47319 * 59.99938 * 15 13 12 37 37 H 1.09004 * 109.47310 * 180.02562 * 15 13 12 38 38 H 0.96998 * 119.99747 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7899 1.5009 0.0003 6 6 3.6143 -0.7152 0.0004 7 6 4.8351 -1.5987 0.0003 8 6 2.3272 -1.1330 0.0002 9 6 1.8600 -2.5656 -0.0056 10 6 1.7062 -3.0497 1.4132 11 8 1.9504 -2.3072 2.3346 12 8 1.2978 -4.3056 1.6534 13 6 1.1715 -4.7031 3.0442 14 1 0.9157 -3.8330 3.6489 15 6 2.4988 -5.2892 3.5297 16 6 0.0867 -5.7412 3.1734 17 1 -0.4539 -6.0691 2.2979 18 6 -0.2155 -6.2724 4.4093 19 7 0.4426 -5.8726 5.4756 20 14 -1.5606 -7.5586 4.5697 21 1 -2.1443 -7.8337 3.2321 22 1 -0.9852 -8.8099 5.1250 23 1 -2.6211 -7.0551 5.4791 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 5.0827 1.7156 -1.0274 28 1 4.5562 2.4336 0.5139 29 1 5.6093 0.9985 0.5142 30 1 5.1298 -1.8113 -1.0274 31 1 5.6511 -1.0911 0.5146 32 1 4.6075 -2.5330 0.5136 33 1 0.9005 -2.6330 -0.5185 34 1 2.5928 -3.1847 -0.5232 35 1 2.7546 -6.1593 2.9249 36 1 3.2834 -4.5384 3.4362 37 1 2.4039 -5.5880 4.5737 38 1 0.2302 -6.2466 6.3450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:38 Heat of formation + Delta-G solvation = -46.823156 kcal Electronic energy + Delta-G solvation = -20366.577534 eV Core-core repulsion = 17209.729017 eV Total energy + Delta-G solvation = -3156.848517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.43827 -40.99885 -37.52843 -35.29627 -35.25274 -34.02655 -31.78667 -30.67551 -30.18346 -27.46489 -27.29362 -25.91925 -23.64959 -21.62192 -20.55371 -20.33229 -18.77290 -18.41930 -17.41808 -17.11919 -16.82717 -16.57917 -16.05739 -15.00395 -14.86755 -14.77140 -14.35685 -14.34192 -13.97727 -13.85414 -13.74694 -13.43074 -13.25116 -13.06513 -12.97752 -12.83136 -12.80005 -12.74539 -12.58675 -12.35871 -12.11358 -11.52533 -11.47529 -11.26287 -10.93077 -10.57547 -9.99995 -9.29322 -8.26288 -6.42963 0.84714 1.43088 1.44366 1.49395 1.52066 1.59659 1.64695 2.28478 2.56171 3.04581 3.51830 3.70016 3.99861 4.08687 4.20574 4.29911 4.38054 4.39645 4.53112 4.58957 4.62103 4.64890 4.71210 4.78292 4.81275 4.88005 4.97194 5.02454 5.09796 5.23108 5.23579 5.52304 5.66428 5.72035 5.97461 6.13815 6.18071 6.64440 6.73197 7.10104 7.30951 8.81583 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032995 B = 0.004372 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.415019 B = 6402.370537 C = 6786.668137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.076 3.924 3 N -0.336 5.336 4 N -0.379 5.379 5 C 0.093 3.907 6 C 0.101 3.899 7 C -0.092 4.092 8 C -0.253 4.253 9 C -0.021 4.021 10 C 0.446 3.554 11 O -0.552 6.552 12 O -0.364 6.364 13 C 0.217 3.783 14 H 0.002 0.998 15 C -0.140 4.140 16 C -0.545 4.545 17 H 0.069 0.931 18 C 0.015 3.985 19 N -0.919 5.919 20 Si 0.983 3.017 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.278 1.278 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.048 0.952 36 H 0.022 0.978 37 H 0.077 0.923 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 9.012 -14.219 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 N -0.159 5.159 4 N -0.161 5.161 5 C -0.047 4.047 6 C -0.028 4.028 7 C -0.150 4.150 8 C -0.264 4.264 9 C -0.059 4.059 10 C 0.291 3.709 11 O -0.443 6.443 12 O -0.281 6.281 13 C 0.164 3.836 14 H 0.019 0.981 15 C -0.198 4.198 16 C -0.583 4.583 17 H 0.088 0.912 18 C -0.185 4.185 19 N -0.558 5.558 20 Si 0.806 3.194 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.203 1.203 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.067 0.933 36 H 0.041 0.959 37 H 0.096 0.904 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.355 10.575 -13.727 19.237 hybrid contribution -0.561 -1.052 0.939 1.518 sum 7.794 9.523 -12.788 17.747 Atomic orbital electron populations 1.20281 0.85685 1.04613 1.02828 1.22551 0.97899 0.90385 0.98057 1.77179 0.87465 1.23159 1.28072 1.48595 1.05819 1.04644 1.57070 1.22177 0.83001 0.94633 1.04883 1.21337 0.97623 0.85100 0.98744 1.20618 0.91881 0.97432 1.05106 1.19281 0.92343 0.94716 1.20098 1.19606 1.06195 0.91744 0.88346 1.24650 0.72414 0.79864 0.93987 1.90576 1.48180 1.57095 1.48489 1.86476 1.77055 1.30506 1.34065 1.20274 0.95237 0.93801 0.74306 0.98055 1.21956 0.95502 0.98882 1.03447 1.21365 1.18842 1.23165 0.94921 0.91248 1.25850 0.99128 0.98970 0.94528 1.70041 1.42032 1.44084 0.99607 0.85132 0.77814 0.77789 0.78659 1.18478 1.19696 1.20315 0.91763 0.89500 0.88707 0.88654 0.89345 0.87405 0.86977 0.89202 0.90833 0.85399 0.84864 0.93318 0.95875 0.90394 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.00 10.26 71.24 0.73 -1.27 16 2 C 0.08 2.45 7.22 43.10 0.31 2.76 16 3 N -0.34 -10.94 12.58 -47.38 -0.60 -11.53 16 4 N -0.38 -10.17 4.01 -356.04 -1.43 -11.60 16 5 C 0.09 1.44 11.27 127.77 1.44 2.89 16 6 C 0.10 2.72 6.93 41.40 0.29 3.00 16 7 C -0.09 -1.70 9.72 71.23 0.69 -1.01 16 8 C -0.25 -7.80 4.59 -20.15 -0.09 -7.90 16 9 C -0.02 -0.61 5.72 29.10 0.17 -0.44 16 10 C 0.45 18.89 7.92 71.24 0.56 19.46 16 11 O -0.55 -27.69 15.25 21.95 0.33 -27.36 16 12 O -0.36 -17.54 9.86 -51.38 -0.51 -18.05 16 13 C 0.22 12.11 2.56 29.85 0.08 12.19 16 14 H 0.00 0.10 7.16 -2.39 -0.02 0.09 16 15 C -0.14 -7.28 9.33 71.98 0.67 -6.61 16 16 C -0.55 -31.19 8.90 25.60 0.23 -30.96 16 17 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 18 C 0.01 0.81 5.30 84.65 0.45 1.26 16 19 N -0.92 -53.48 11.32 21.45 0.24 -53.23 16 20 Si 0.98 43.02 29.54 68.60 2.03 45.05 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 26 H 0.09 2.10 7.25 -2.39 -0.02 2.09 16 27 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.11 1.16 7.05 -2.39 -0.02 1.15 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.30 7.08 -2.39 -0.02 1.28 16 32 H 0.07 1.59 7.78 -2.39 -0.02 1.58 16 33 H 0.13 3.15 7.25 -2.38 -0.02 3.14 16 34 H 0.13 3.03 7.78 -2.38 -0.02 3.01 16 35 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 4.36 6.07 -2.38 -0.01 4.35 16 38 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -76.87 324.14 6.65 -70.21 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.05 Total: 13.15 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 5.52 Total: -6.63 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -1.78 Total: -76.37 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.17 Total: -45.41 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -76.87 6.65 -70.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.391 kcal (2) G-P(sol) polarization free energy of solvation -76.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds