Wall clock time and date at job start Mon Mar 30 2020 04:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48501 * 109.47646 * 240.00369 * 3 2 1 5 5 H 1.48508 * 109.47156 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47118 * 119.99971 * 3 2 1 7 7 C 1.38945 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00346 * 197.58944 * 7 2 1 9 9 N 1.37105 * 119.99598 * 17.58881 * 7 2 1 10 10 C 1.34778 * 119.99937 * 52.40752 * 9 7 2 11 11 O 1.21293 * 119.99659 * 185.65268 * 10 9 7 12 12 C 1.50699 * 120.00173 * 5.65708 * 10 9 7 13 13 H 1.09001 * 110.85253 * 310.77176 * 12 10 9 14 14 C 1.54476 * 110.97187 * 74.55977 * 12 10 9 15 15 N 1.46825 * 105.44401 * 143.50895 * 14 12 10 16 16 C 1.34418 * 111.31582 * 343.03820 * 15 14 12 17 17 O 1.21280 * 124.93916 * 180.41401 * 16 15 14 18 18 C 1.51284 * 110.11741 * 0.37615 * 16 15 14 19 19 C 1.46500 * 120.00055 * 232.40048 * 9 7 2 20 20 C 1.54266 * 110.48684 * 300.00657 * 19 9 7 21 21 C 1.53877 * 106.59630 * 142.41925 * 20 19 9 22 22 C 1.54268 * 106.64009 * 359.97358 * 21 20 19 23 23 C 1.54890 * 110.59513 * 54.84637 * 19 9 7 24 24 H 0.97003 * 119.99861 * 354.51794 * 1 2 3 25 25 H 1.09002 * 110.24756 * 262.53615 * 14 12 10 26 26 H 1.09004 * 110.24510 * 24.53563 * 14 12 10 27 27 H 0.96999 * 124.33632 * 162.99990 * 15 14 12 28 28 H 1.08999 * 110.48700 * 257.57877 * 18 16 15 29 29 H 1.09000 * 110.48687 * 134.93014 * 18 16 15 30 30 H 1.08995 * 110.43528 * 177.45616 * 19 9 7 31 31 H 1.08989 * 110.03332 * 23.13528 * 20 19 9 32 32 H 1.09001 * 110.07005 * 261.71713 * 20 19 9 33 33 H 1.09004 * 110.03266 * 119.28099 * 21 20 19 34 34 H 1.08997 * 110.03228 * 240.66555 * 21 20 19 35 35 H 1.08997 * 110.48687 * 95.09540 * 22 21 20 36 36 H 1.09007 * 110.48353 * 217.73682 * 22 21 20 37 37 H 1.09005 * 110.75672 * 321.63532 * 23 19 9 38 38 H 1.08999 * 110.75934 * 84.82004 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0509 -1.2253 0.2821 9 7 1.3714 -2.3627 -0.3599 10 6 0.6978 -2.4280 -1.5255 11 8 0.0493 -3.4165 -1.7965 12 6 0.7506 -1.2730 -2.4920 13 1 0.5433 -0.3315 -1.9832 14 6 2.1134 -1.2209 -3.2175 15 7 1.8112 -0.7837 -4.5862 16 6 0.5052 -0.9298 -4.8687 17 8 -0.0111 -0.6520 -5.9304 18 6 -0.2267 -1.4921 -3.6701 19 6 1.4224 -3.5306 0.5230 20 6 2.8822 -3.9797 0.7404 21 6 2.9890 -4.4323 2.2072 22 6 1.5910 -4.2422 2.8311 23 6 0.9228 -3.1630 1.9423 24 1 -0.4850 0.8362 0.0803 25 1 2.7737 -0.5043 -2.7290 26 1 2.5720 -2.2097 -3.2301 27 1 2.4696 -0.4338 -5.2067 28 1 -0.4252 -2.5549 -3.8083 29 1 -1.1561 -0.9483 -3.5010 30 1 0.8297 -4.3465 0.1095 31 1 3.5604 -3.1467 0.5564 32 1 3.1212 -4.8096 0.0753 33 1 3.2791 -5.4820 2.2539 34 1 3.7198 -3.8194 2.7348 35 1 1.0254 -5.1731 2.7908 36 1 1.6768 -3.8911 3.8595 37 1 1.2619 -2.1664 2.2251 38 1 -0.1637 -3.2302 1.9988 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125202139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:51 Heat of formation + Delta-G solvation = -76.862912 kcal Electronic energy + Delta-G solvation = -21500.094654 eV Core-core repulsion = 18341.943516 eV Total energy + Delta-G solvation = -3158.151138 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02134 -38.68579 -36.87470 -35.44597 -34.31637 -31.68591 -30.60476 -28.04079 -27.59664 -26.52582 -24.96400 -22.47111 -20.05321 -19.88476 -19.57014 -19.32162 -17.07765 -16.78730 -15.91446 -15.47156 -15.09178 -14.72708 -14.41312 -14.21802 -13.71774 -13.26747 -12.98798 -12.78329 -12.70065 -12.48482 -12.38760 -11.74562 -11.29906 -11.22534 -11.17801 -10.79013 -10.68872 -10.59104 -10.50378 -10.43655 -10.36127 -9.97186 -9.68869 -9.42766 -8.97517 -8.68333 -8.38318 -7.38776 -6.55777 -4.35813 2.99995 3.05357 3.09440 3.11780 3.72419 3.88989 4.03198 4.56996 4.73977 5.06179 5.24594 5.27874 5.35944 5.43689 5.73996 5.80369 6.01728 6.09548 6.14367 6.17618 6.22733 6.23393 6.31619 6.43780 6.44743 6.51893 6.57370 6.62506 6.88190 6.96839 7.01115 7.19092 7.20435 7.33123 7.38780 7.85918 8.51774 8.67406 8.78000 9.45231 9.88796 10.49225 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.008138 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.491970 B = 3439.997111 C = 4283.881955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.051 3.949 3 Si 0.902 3.098 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.084 0.916 9 N -0.443 5.443 10 C 0.528 3.472 11 O -0.604 6.604 12 C -0.108 4.108 13 H 0.135 0.865 14 C 0.121 3.879 15 N -0.734 5.734 16 C 0.522 3.478 17 O -0.554 6.554 18 C -0.145 4.145 19 C 0.133 3.867 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.116 4.116 24 H 0.275 0.725 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.403 0.597 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -1.864 2.246 6.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.156 4.156 3 Si 0.728 3.272 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.102 0.898 9 N -0.161 5.161 10 C 0.317 3.683 11 O -0.490 6.490 12 C -0.130 4.130 13 H 0.153 0.847 14 C -0.004 4.004 15 N -0.388 5.388 16 C 0.310 3.690 17 O -0.433 6.433 18 C -0.185 4.185 19 C 0.029 3.971 20 C -0.169 4.169 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.155 4.155 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.241 0.759 28 H 0.133 0.867 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.400 -2.130 1.624 6.028 hybrid contribution 0.724 1.184 0.107 1.393 sum 6.124 -0.946 1.731 6.434 Atomic orbital electron populations 1.69920 1.06064 1.28568 1.44300 1.25586 0.95173 0.99951 0.94928 0.86396 0.79713 0.81610 0.79517 1.19285 1.20692 1.19510 1.19093 0.94835 0.83203 1.49497 0.89825 1.43220 1.47890 1.10685 1.14351 1.19738 0.80232 0.86248 0.82034 1.90500 1.45680 1.34795 1.77984 1.22351 0.93032 1.03312 0.94280 0.84734 1.21928 0.97884 1.00418 0.80128 1.46342 1.09926 1.65923 1.16648 1.21137 0.82994 0.76027 0.88844 1.90674 1.71739 1.52999 1.27862 1.22303 0.99455 1.04441 0.92288 1.21797 0.94498 0.90162 0.90692 1.22411 0.98707 1.00466 0.95310 1.22030 0.97303 0.99869 0.96295 1.22327 0.96147 0.99104 0.98686 1.22633 0.99198 0.99321 0.94310 0.91453 0.89483 0.91525 0.75936 0.86728 0.88527 0.90100 0.90792 0.92975 0.92878 0.92345 0.92477 0.92434 0.89780 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.46 11.56 55.50 0.64 -19.82 16 2 C 0.05 1.12 3.44 -17.47 -0.06 1.06 16 3 Si 0.90 17.41 29.59 -169.99 -5.03 12.38 16 4 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.34 -7.37 6.70 -14.93 -0.10 -7.47 16 8 H 0.08 1.77 6.85 -52.49 -0.36 1.41 16 9 N -0.44 -9.82 2.46 -105.98 -0.26 -10.08 16 10 C 0.53 12.29 6.21 -10.99 -0.07 12.22 16 11 O -0.60 -15.44 14.87 5.55 0.08 -15.35 16 12 C -0.11 -2.24 2.48 -90.14 -0.22 -2.46 16 13 H 0.14 3.00 4.55 -51.93 -0.24 2.76 16 14 C 0.12 2.10 6.95 -3.09 -0.02 2.08 16 15 N -0.73 -12.11 6.24 -59.16 -0.37 -12.48 16 16 C 0.52 10.19 8.43 -10.86 -0.09 10.09 16 17 O -0.55 -12.24 18.03 5.56 0.10 -12.14 16 18 C -0.14 -2.89 6.27 -26.74 -0.17 -3.06 16 19 C 0.13 2.68 3.25 -66.27 -0.22 2.47 16 20 C -0.13 -2.21 6.42 -25.61 -0.16 -2.37 16 21 C -0.12 -1.69 6.80 -25.61 -0.17 -1.86 16 22 C -0.12 -1.88 6.84 -25.03 -0.17 -2.05 16 23 C -0.12 -2.20 6.41 -24.70 -0.16 -2.36 16 24 H 0.27 6.36 8.32 -40.82 -0.34 6.03 16 25 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.07 1.13 7.88 -51.93 -0.41 0.73 16 27 H 0.40 5.52 8.96 -40.82 -0.37 5.15 16 28 H 0.11 2.38 6.89 -51.93 -0.36 2.02 16 29 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 30 H 0.08 1.76 6.98 -51.93 -0.36 1.40 16 31 H 0.07 1.29 6.52 -51.94 -0.34 0.95 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.08 1.75 7.15 -51.93 -0.37 1.38 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -27.27 303.52 -7.20 -34.46 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.32 Total: 12.18 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.62 Total: 6.28 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.01 Total: -42.39 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: 0.18 Total: -27.50 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.27 -7.20 -34.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125202139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.400 kcal (2) G-P(sol) polarization free energy of solvation -27.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds