Wall clock time and date at job start Mon Mar 30 2020 04:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48501 * 109.47646 * 240.00369 * 3 2 1 5 5 H 1.48508 * 109.47156 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47118 * 119.99971 * 3 2 1 7 7 C 1.38945 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00346 * 197.58944 * 7 2 1 9 9 N 1.37105 * 119.99598 * 17.58881 * 7 2 1 10 10 C 1.34778 * 119.99937 * 52.40752 * 9 7 2 11 11 O 1.21293 * 119.99659 * 185.65268 * 10 9 7 12 12 C 1.50699 * 120.00173 * 5.65708 * 10 9 7 13 13 H 1.09001 * 110.85253 * 310.77176 * 12 10 9 14 14 C 1.54476 * 110.97187 * 74.55977 * 12 10 9 15 15 N 1.46825 * 105.44401 * 143.50895 * 14 12 10 16 16 C 1.34418 * 111.31582 * 343.03820 * 15 14 12 17 17 O 1.21280 * 124.93916 * 180.41401 * 16 15 14 18 18 C 1.51284 * 110.11741 * 0.37615 * 16 15 14 19 19 C 1.46500 * 120.00055 * 232.40048 * 9 7 2 20 20 C 1.54266 * 110.48684 * 300.00657 * 19 9 7 21 21 C 1.53877 * 106.59630 * 142.41925 * 20 19 9 22 22 C 1.54268 * 106.64009 * 359.97358 * 21 20 19 23 23 C 1.54890 * 110.59513 * 54.84637 * 19 9 7 24 24 H 0.97003 * 119.99861 * 354.51794 * 1 2 3 25 25 H 1.09002 * 110.24756 * 262.53615 * 14 12 10 26 26 H 1.09004 * 110.24510 * 24.53563 * 14 12 10 27 27 H 0.96999 * 124.33632 * 162.99990 * 15 14 12 28 28 H 1.08999 * 110.48700 * 257.57877 * 18 16 15 29 29 H 1.09000 * 110.48687 * 134.93014 * 18 16 15 30 30 H 1.08995 * 110.43528 * 177.45616 * 19 9 7 31 31 H 1.08989 * 110.03332 * 23.13528 * 20 19 9 32 32 H 1.09001 * 110.07005 * 261.71713 * 20 19 9 33 33 H 1.09004 * 110.03266 * 119.28099 * 21 20 19 34 34 H 1.08997 * 110.03228 * 240.66555 * 21 20 19 35 35 H 1.08997 * 110.48687 * 95.09540 * 22 21 20 36 36 H 1.09007 * 110.48353 * 217.73682 * 22 21 20 37 37 H 1.09005 * 110.75672 * 321.63532 * 23 19 9 38 38 H 1.08999 * 110.75934 * 84.82004 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0509 -1.2253 0.2821 9 7 1.3714 -2.3627 -0.3599 10 6 0.6978 -2.4280 -1.5255 11 8 0.0493 -3.4165 -1.7965 12 6 0.7506 -1.2730 -2.4920 13 1 0.5433 -0.3315 -1.9832 14 6 2.1134 -1.2209 -3.2175 15 7 1.8112 -0.7837 -4.5862 16 6 0.5052 -0.9298 -4.8687 17 8 -0.0111 -0.6520 -5.9304 18 6 -0.2267 -1.4921 -3.6701 19 6 1.4224 -3.5306 0.5230 20 6 2.8822 -3.9797 0.7404 21 6 2.9890 -4.4323 2.2072 22 6 1.5910 -4.2422 2.8311 23 6 0.9228 -3.1630 1.9423 24 1 -0.4850 0.8362 0.0803 25 1 2.7737 -0.5043 -2.7290 26 1 2.5720 -2.2097 -3.2301 27 1 2.4696 -0.4338 -5.2067 28 1 -0.4252 -2.5549 -3.8083 29 1 -1.1561 -0.9483 -3.5010 30 1 0.8297 -4.3465 0.1095 31 1 3.5604 -3.1467 0.5564 32 1 3.1212 -4.8096 0.0753 33 1 3.2791 -5.4820 2.2539 34 1 3.7198 -3.8194 2.7348 35 1 1.0254 -5.1731 2.7908 36 1 1.6768 -3.8911 3.8595 37 1 1.2619 -2.1664 2.2251 38 1 -0.1637 -3.2302 1.9988 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125202139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:50 Heat of formation + Delta-G solvation = -94.162121 kcal Electronic energy + Delta-G solvation = -21500.844804 eV Core-core repulsion = 18341.943516 eV Total energy + Delta-G solvation = -3158.901288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64296 -40.31943 -38.42424 -37.08062 -36.00880 -33.37167 -32.20514 -29.42332 -29.12638 -28.04960 -26.68844 -24.05249 -21.60185 -21.33098 -21.07940 -20.93133 -18.71959 -18.38230 -17.47542 -17.17940 -16.69633 -16.20599 -15.95836 -15.75958 -15.41714 -14.75700 -14.53741 -14.33879 -14.16858 -14.09569 -13.96332 -13.33505 -13.01347 -12.78512 -12.70259 -12.34608 -12.16961 -12.07206 -11.97580 -11.94473 -11.80961 -11.35805 -11.10760 -11.05808 -10.68283 -10.28049 -10.06437 -9.13574 -8.28596 -6.13514 1.45804 1.48497 1.53962 1.60103 2.07323 2.33171 2.43512 2.92883 3.03820 3.48780 3.70350 3.92576 3.94777 4.11439 4.17467 4.28744 4.58372 4.62409 4.72440 4.73341 4.81075 4.84009 4.90317 4.95577 4.98085 5.10567 5.20082 5.28219 5.30598 5.47386 5.57007 5.59652 5.65184 5.74779 5.95165 6.13983 6.76373 7.04955 7.20353 7.67500 8.13641 8.77042 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.008138 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.491970 B = 3439.997111 C = 4283.881955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.021 3.979 3 Si 0.956 3.044 4 H -0.250 1.250 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.338 4.338 8 H 0.096 0.904 9 N -0.445 5.445 10 C 0.513 3.487 11 O -0.639 6.639 12 C -0.108 4.108 13 H 0.123 0.877 14 C 0.130 3.870 15 N -0.712 5.712 16 C 0.526 3.474 17 O -0.581 6.581 18 C -0.143 4.143 19 C 0.119 3.881 20 C -0.122 4.122 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.113 4.113 24 H 0.272 0.728 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.422 0.578 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.730 -1.654 2.898 9.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.183 4.183 3 Si 0.780 3.220 4 H -0.174 1.174 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.466 4.466 8 H 0.113 0.887 9 N -0.162 5.162 10 C 0.303 3.697 11 O -0.528 6.528 12 C -0.130 4.130 13 H 0.140 0.860 14 C 0.006 3.994 15 N -0.367 5.367 16 C 0.313 3.687 17 O -0.462 6.462 18 C -0.183 4.183 19 C 0.015 3.985 20 C -0.161 4.161 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.151 4.151 24 H 0.082 0.918 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.262 0.738 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.969 -1.922 2.295 8.512 hybrid contribution -0.100 1.081 -0.029 1.086 sum 7.869 -0.842 2.266 8.232 Atomic orbital electron populations 1.70039 1.07721 1.29031 1.45696 1.26187 0.95410 1.02459 0.94233 0.85549 0.78487 0.77687 0.80280 1.17380 1.22032 1.19024 1.19349 0.95234 0.83078 1.48905 0.88681 1.43434 1.47168 1.11391 1.14223 1.20204 0.80223 0.86535 0.82773 1.90468 1.47234 1.36277 1.78786 1.22244 0.95206 1.01507 0.94041 0.85981 1.21879 0.96111 1.01480 0.79936 1.46125 1.09224 1.64751 1.16585 1.20918 0.83804 0.75894 0.88044 1.90663 1.72444 1.54404 1.28661 1.22224 0.99601 1.03765 0.92712 1.22012 0.96775 0.89019 0.90712 1.22335 0.95698 1.00504 0.97527 1.22018 0.96972 1.01641 0.94143 1.22296 0.96265 0.97976 0.98799 1.22532 0.98047 0.99773 0.94766 0.91791 0.87742 0.90720 0.73759 0.87841 0.88961 0.92464 0.91192 0.92269 0.90417 0.91002 0.91484 0.90540 0.91713 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.16 11.56 21.66 0.25 -42.91 16 2 C 0.02 0.92 3.44 84.93 0.29 1.21 16 3 Si 0.96 34.38 29.59 68.60 2.03 36.41 16 4 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 5 H -0.29 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.34 -14.42 6.70 84.04 0.56 -13.86 16 8 H 0.10 3.82 6.85 -2.91 -0.02 3.80 16 9 N -0.44 -19.81 2.46 -607.58 -1.49 -21.30 16 10 C 0.51 24.24 6.21 87.66 0.54 24.78 16 11 O -0.64 -33.77 14.87 -3.07 -0.05 -33.82 16 12 C -0.11 -4.47 2.48 -10.48 -0.03 -4.50 16 13 H 0.12 5.44 4.55 -2.39 -0.01 5.42 16 14 C 0.13 4.29 6.95 86.82 0.60 4.89 16 15 N -0.71 -22.01 6.24 -459.67 -2.87 -24.88 16 16 C 0.53 20.11 8.43 87.90 0.74 20.86 16 17 O -0.58 -25.33 18.03 -3.03 -0.05 -25.39 16 18 C -0.14 -5.78 6.27 30.59 0.19 -5.58 16 19 C 0.12 4.81 3.25 46.07 0.15 4.96 16 20 C -0.12 -3.91 6.42 31.32 0.20 -3.71 16 21 C -0.11 -2.82 6.80 31.32 0.21 -2.61 16 22 C -0.12 -3.23 6.84 31.69 0.22 -3.01 16 23 C -0.11 -4.28 6.41 31.91 0.20 -4.08 16 24 H 0.27 12.84 8.32 -92.71 -0.77 12.07 16 25 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.07 2.39 7.88 -2.38 -0.02 2.37 16 27 H 0.42 10.31 8.96 -92.71 -0.83 9.48 16 28 H 0.10 4.44 6.89 -2.39 -0.02 4.42 16 29 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 30 H 0.06 2.57 6.98 -2.39 -0.02 2.55 16 31 H 0.07 2.29 6.52 -2.39 -0.02 2.28 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.06 2.69 7.15 -2.38 -0.02 2.68 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -59.21 303.52 1.96 -57.25 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.25 Total: 35.30 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 3.89 Total: 19.34 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -4.11 Total: -89.09 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -0.10 Total: -59.21 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Total: -59.21 1.96 -57.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125202139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.911 kcal (2) G-P(sol) polarization free energy of solvation -59.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds