Wall clock time and date at job start Mon Mar 30 2020 04:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86809 * 119.99751 * 2 1 4 4 H 1.48496 * 109.46877 * 274.10098 * 3 2 1 5 5 H 1.48497 * 109.46863 * 34.10121 * 3 2 1 6 6 H 1.48498 * 109.46758 * 154.09939 * 3 2 1 7 7 C 1.38954 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99948 * 341.16882 * 7 2 1 9 9 N 1.37099 * 119.99768 * 160.89545 * 7 2 1 10 10 C 1.34769 * 120.00313 * 316.17521 * 9 7 2 11 11 O 1.21298 * 120.00143 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00210 * 180.02562 * 10 9 7 13 13 H 1.08996 * 110.85686 * 59.29949 * 12 10 9 14 14 C 1.54480 * 110.96706 * 295.50324 * 12 10 9 15 15 N 1.46823 * 105.44238 * 216.49283 * 14 12 10 16 16 C 1.34423 * 111.31850 * 16.96708 * 15 14 12 17 17 O 1.21277 * 124.94077 * 179.58943 * 16 15 14 18 18 C 1.51279 * 110.11355 * 359.62359 * 16 15 14 19 19 C 1.46499 * 119.99645 * 136.17331 * 9 7 2 20 20 C 1.54261 * 110.03674 * 54.32506 * 19 9 7 21 21 C 1.54884 * 104.19856 * 217.10647 * 20 19 9 22 22 C 1.54889 * 102.75076 * 37.93758 * 21 20 19 23 23 C 1.53879 * 110.03134 * 297.15472 * 19 9 7 24 24 H 0.96997 * 120.00756 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.24653 * 335.46457 * 14 12 10 26 26 H 1.08999 * 110.24172 * 97.46799 * 14 12 10 27 27 H 0.97003 * 124.33147 * 196.99947 * 15 14 12 28 28 H 1.09004 * 110.48539 * 225.07088 * 18 16 15 29 29 H 1.08993 * 110.48789 * 102.42534 * 18 16 15 30 30 H 1.09003 * 110.01619 * 175.77174 * 19 9 7 31 31 H 1.09002 * 110.48486 * 335.78347 * 20 19 9 32 32 H 1.09001 * 110.48502 * 98.42253 * 20 19 9 33 33 H 1.09009 * 110.75415 * 279.62781 * 21 20 19 34 34 H 1.09002 * 110.76224 * 156.25729 * 21 20 19 35 35 H 1.08993 * 110.48893 * 203.37955 * 22 21 20 36 36 H 1.09004 * 110.48336 * 80.73481 * 22 21 20 37 37 H 1.09005 * 110.03291 * 238.56845 * 23 19 9 38 38 H 1.08997 * 110.03386 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4088 2.0965 -1.3965 5 1 1.4915 2.6261 0.7850 6 1 3.5862 1.4168 0.6116 7 6 2.0089 -1.2034 -0.0005 8 1 1.5123 -2.1138 0.3010 9 7 3.3233 -1.2358 -0.3892 10 6 3.7201 -0.5532 -1.4813 11 8 2.9144 0.0896 -2.1208 12 6 5.1648 -0.5893 -1.9088 13 1 5.4828 -1.6111 -2.1156 14 6 6.0725 0.0679 -0.8455 15 7 7.1201 0.7645 -1.6025 16 6 6.7678 0.9257 -2.8896 17 8 7.4459 1.4750 -3.7318 18 6 5.4021 0.3230 -3.1346 19 6 4.2963 -2.0125 0.3829 20 6 3.8147 -3.4710 0.5256 21 6 4.2459 -3.8752 1.9572 22 6 3.9946 -2.5798 2.7684 23 6 4.4108 -1.4458 1.8089 24 1 -0.4851 0.8400 0.0004 25 1 5.5012 0.7798 -0.2498 26 1 6.5137 -0.6942 -0.2032 27 1 7.9591 1.0689 -1.2224 28 1 5.4035 -0.2646 -4.0528 29 1 4.6433 1.1039 -3.1815 30 1 5.2690 -1.9861 -0.1085 31 1 2.7308 -3.5265 0.4237 32 1 4.3013 -4.1075 -0.2135 33 1 5.3013 -4.1469 1.9805 34 1 3.6275 -4.6912 2.3311 35 1 4.6125 -2.5660 3.6662 36 1 2.9398 -2.4914 3.0287 37 1 5.4391 -1.1453 2.0099 38 1 3.7420 -0.5932 1.9267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125202274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:53 Heat of formation + Delta-G solvation = -60.361847 kcal Electronic energy + Delta-G solvation = -21733.028356 eV Core-core repulsion = 18575.592758 eV Total energy + Delta-G solvation = -3157.435598 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55772 -39.03055 -37.20704 -35.96906 -33.70149 -32.09531 -31.07456 -28.32917 -27.85310 -27.11182 -24.98086 -22.38521 -20.59552 -20.31819 -20.09986 -19.06395 -17.32534 -17.23022 -16.53935 -15.57519 -15.39587 -14.83505 -14.59090 -14.22143 -14.04776 -13.53474 -13.30572 -13.22784 -12.97624 -12.61911 -12.60189 -12.00903 -11.64939 -11.34947 -11.23758 -11.01738 -10.88628 -10.71429 -10.63729 -10.29374 -10.09350 -10.07847 -9.88049 -9.76388 -9.05459 -8.63627 -8.63439 -7.65826 -6.26015 -4.03004 2.71174 3.15952 3.31018 3.42860 3.56458 3.68478 4.16493 4.44640 4.58309 4.64030 4.95616 4.97957 5.02948 5.16418 5.19613 5.37909 5.45022 5.65752 5.70696 5.75399 5.86515 5.99072 6.00234 6.03195 6.04517 6.22200 6.25742 6.27267 6.41089 6.65086 6.79940 6.82051 6.84012 7.02422 7.78245 7.92833 8.32161 8.70855 8.82819 9.35928 9.71638 10.79847 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.009674 C = 0.007148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.358684 B = 2893.604204 C = 3916.055297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.094 3.906 3 Si 0.900 3.100 4 H -0.256 1.256 5 H -0.307 1.307 6 H -0.277 1.277 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.451 5.451 10 C 0.455 3.545 11 O -0.537 6.537 12 C -0.120 4.120 13 H 0.107 0.893 14 C 0.104 3.896 15 N -0.733 5.733 16 C 0.522 3.478 17 O -0.543 6.543 18 C -0.141 4.141 19 C 0.122 3.878 20 C -0.131 4.131 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.132 4.132 24 H 0.272 0.728 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.407 0.593 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.858 -4.866 4.212 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.115 4.115 3 Si 0.730 3.270 4 H -0.181 1.181 5 H -0.236 1.236 6 H -0.203 1.203 7 C -0.467 4.467 8 H 0.115 0.885 9 N -0.172 5.172 10 C 0.243 3.757 11 O -0.419 6.419 12 C -0.143 4.143 13 H 0.125 0.875 14 C -0.020 4.020 15 N -0.388 5.388 16 C 0.310 3.690 17 O -0.420 6.420 18 C -0.181 4.181 19 C 0.017 3.983 20 C -0.170 4.170 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.171 4.171 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.246 0.754 28 H 0.123 0.877 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.483 -4.216 3.400 12.696 hybrid contribution 0.713 0.868 0.431 1.204 sum 12.196 -3.348 3.831 13.215 Atomic orbital electron populations 1.69733 1.06775 1.28135 1.45182 1.25274 0.94818 0.99120 0.92285 0.86607 0.79114 0.82768 0.78466 1.18109 1.23554 1.20269 1.18669 0.83564 0.95781 1.48714 0.88527 1.43721 1.08324 1.43954 1.21200 1.19873 0.88432 0.85339 0.82042 1.90574 1.53618 1.43363 1.54308 1.22281 0.95755 1.00757 0.95468 0.87509 1.22361 0.88832 0.96719 0.94129 1.46283 1.20962 1.60712 1.10887 1.21049 0.88126 0.77978 0.81888 1.90715 1.58581 1.44614 1.48123 1.22282 0.95343 1.01342 0.99112 1.21941 0.92113 0.91941 0.92258 1.22691 1.03390 0.95059 0.95822 1.22433 1.00133 0.97501 0.95868 1.22263 1.01694 0.94428 0.97132 1.22487 1.00391 0.99705 0.94473 0.91794 0.90333 0.89451 0.75425 0.87719 0.86039 0.90775 0.89393 0.92455 0.92256 0.92021 0.92660 0.91098 0.92816 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.29 13.96 55.50 0.77 -24.51 16 2 C 0.09 2.61 4.85 -17.47 -0.08 2.52 16 3 Si 0.90 22.66 24.86 -169.99 -4.23 18.43 16 4 H -0.26 -6.84 6.34 56.52 0.36 -6.48 16 5 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.28 -6.36 6.33 56.52 0.36 -6.01 16 7 C -0.34 -8.74 8.35 -14.93 -0.12 -8.87 16 8 H 0.10 2.61 6.62 -52.49 -0.35 2.26 16 9 N -0.45 -9.52 2.06 -106.54 -0.22 -9.74 16 10 C 0.45 9.70 5.18 -10.99 -0.06 9.65 16 11 O -0.54 -13.83 11.22 5.54 0.06 -13.76 16 12 C -0.12 -1.91 2.53 -90.14 -0.23 -2.14 16 13 H 0.11 1.42 7.71 -51.93 -0.40 1.02 16 14 C 0.10 1.42 6.27 -3.09 -0.02 1.40 16 15 N -0.73 -9.67 6.24 -59.16 -0.37 -10.04 16 16 C 0.52 8.51 8.43 -10.86 -0.09 8.42 16 17 O -0.54 -10.51 18.03 5.56 0.10 -10.41 16 18 C -0.14 -2.30 6.19 -26.74 -0.17 -2.46 16 19 C 0.12 1.96 2.62 -66.81 -0.18 1.79 16 20 C -0.13 -1.97 6.40 -25.08 -0.16 -2.13 16 21 C -0.12 -1.51 6.91 -24.74 -0.17 -1.68 16 22 C -0.12 -1.60 6.83 -25.07 -0.17 -1.77 16 23 C -0.13 -2.02 6.30 -25.61 -0.16 -2.18 16 24 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.08 1.24 7.10 -51.93 -0.37 0.87 16 26 H 0.09 0.93 6.70 -51.93 -0.35 0.58 16 27 H 0.41 4.33 8.96 -40.82 -0.37 3.97 16 28 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.12 2.28 7.02 -51.93 -0.36 1.91 16 30 H 0.07 0.99 4.29 -51.93 -0.22 0.77 16 31 H 0.09 1.58 6.12 -51.93 -0.32 1.26 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.52 7.43 -51.93 -0.39 1.14 16 LS Contribution 294.26 15.07 4.43 4.43 Total: -1.00 -32.43 294.26 -6.36 -38.78 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.30 Total: 4.28 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.61 Total: 2.55 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.19 Total: -44.30 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.16 Total: -24.17 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.23 Total: 18.43 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.43 -6.36 -38.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125202274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.577 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds