Wall clock time and date at job start Mon Mar 30 2020 04:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86809 * 119.99751 * 2 1 4 4 H 1.48496 * 109.46877 * 274.10098 * 3 2 1 5 5 H 1.48497 * 109.46863 * 34.10121 * 3 2 1 6 6 H 1.48498 * 109.46758 * 154.09939 * 3 2 1 7 7 C 1.38954 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99948 * 341.16882 * 7 2 1 9 9 N 1.37099 * 119.99768 * 160.89545 * 7 2 1 10 10 C 1.34769 * 120.00313 * 316.17521 * 9 7 2 11 11 O 1.21298 * 120.00143 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00210 * 180.02562 * 10 9 7 13 13 H 1.08996 * 110.85686 * 59.29949 * 12 10 9 14 14 C 1.54480 * 110.96706 * 295.50324 * 12 10 9 15 15 N 1.46823 * 105.44238 * 216.49283 * 14 12 10 16 16 C 1.34423 * 111.31850 * 16.96708 * 15 14 12 17 17 O 1.21277 * 124.94077 * 179.58943 * 16 15 14 18 18 C 1.51279 * 110.11355 * 359.62359 * 16 15 14 19 19 C 1.46499 * 119.99645 * 136.17331 * 9 7 2 20 20 C 1.54261 * 110.03674 * 54.32506 * 19 9 7 21 21 C 1.54884 * 104.19856 * 217.10647 * 20 19 9 22 22 C 1.54889 * 102.75076 * 37.93758 * 21 20 19 23 23 C 1.53879 * 110.03134 * 297.15472 * 19 9 7 24 24 H 0.96997 * 120.00756 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.24653 * 335.46457 * 14 12 10 26 26 H 1.08999 * 110.24172 * 97.46799 * 14 12 10 27 27 H 0.97003 * 124.33147 * 196.99947 * 15 14 12 28 28 H 1.09004 * 110.48539 * 225.07088 * 18 16 15 29 29 H 1.08993 * 110.48789 * 102.42534 * 18 16 15 30 30 H 1.09003 * 110.01619 * 175.77174 * 19 9 7 31 31 H 1.09002 * 110.48486 * 335.78347 * 20 19 9 32 32 H 1.09001 * 110.48502 * 98.42253 * 20 19 9 33 33 H 1.09009 * 110.75415 * 279.62781 * 21 20 19 34 34 H 1.09002 * 110.76224 * 156.25729 * 21 20 19 35 35 H 1.08993 * 110.48893 * 203.37955 * 22 21 20 36 36 H 1.09004 * 110.48336 * 80.73481 * 22 21 20 37 37 H 1.09005 * 110.03291 * 238.56845 * 23 19 9 38 38 H 1.08997 * 110.03386 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4088 2.0965 -1.3965 5 1 1.4915 2.6261 0.7850 6 1 3.5862 1.4168 0.6116 7 6 2.0089 -1.2034 -0.0005 8 1 1.5123 -2.1138 0.3010 9 7 3.3233 -1.2358 -0.3892 10 6 3.7201 -0.5532 -1.4813 11 8 2.9144 0.0896 -2.1208 12 6 5.1648 -0.5893 -1.9088 13 1 5.4828 -1.6111 -2.1156 14 6 6.0725 0.0679 -0.8455 15 7 7.1201 0.7645 -1.6025 16 6 6.7678 0.9257 -2.8896 17 8 7.4459 1.4750 -3.7318 18 6 5.4021 0.3230 -3.1346 19 6 4.2963 -2.0125 0.3829 20 6 3.8147 -3.4710 0.5256 21 6 4.2459 -3.8752 1.9572 22 6 3.9946 -2.5798 2.7684 23 6 4.4108 -1.4458 1.8089 24 1 -0.4851 0.8400 0.0004 25 1 5.5012 0.7798 -0.2498 26 1 6.5137 -0.6942 -0.2032 27 1 7.9591 1.0689 -1.2224 28 1 5.4035 -0.2646 -4.0528 29 1 4.6433 1.1039 -3.1815 30 1 5.2690 -1.9861 -0.1085 31 1 2.7308 -3.5265 0.4237 32 1 4.3013 -4.1075 -0.2135 33 1 5.3013 -4.1469 1.9805 34 1 3.6275 -4.6912 2.3311 35 1 4.6125 -2.5660 3.6662 36 1 2.9398 -2.4914 3.0287 37 1 5.4391 -1.1453 2.0099 38 1 3.7420 -0.5932 1.9267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125202274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:53 Heat of formation + Delta-G solvation = -84.993546 kcal Electronic energy + Delta-G solvation = -21734.096467 eV Core-core repulsion = 18575.592758 eV Total energy + Delta-G solvation = -3158.503709 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.94606 -40.47277 -38.60067 -37.33604 -35.40125 -33.95426 -32.43655 -29.49866 -29.21055 -28.38090 -26.69455 -23.84907 -21.90885 -21.56531 -21.34381 -20.60979 -18.84860 -18.48760 -18.11169 -17.23265 -16.75675 -16.08789 -15.99143 -15.78784 -15.46834 -15.24624 -14.76078 -14.54078 -14.44873 -14.04557 -13.95890 -13.68514 -13.26968 -12.74672 -12.67489 -12.36646 -12.29080 -12.18111 -11.82690 -11.73589 -11.71864 -11.32415 -11.21452 -11.10645 -10.73461 -10.39981 -10.20427 -9.47009 -8.37491 -6.10896 1.20068 1.29874 1.43856 1.49156 1.91116 2.32051 2.42985 2.59126 3.11263 3.28648 3.37042 3.75088 3.85392 3.90171 3.97846 4.23945 4.28051 4.46549 4.50653 4.66511 4.74869 4.81212 4.82408 4.83481 4.92772 4.99898 5.16802 5.23125 5.36198 5.48314 5.59789 5.68429 5.69019 5.76466 5.91621 5.99553 6.83320 6.96026 7.15903 7.41121 7.91278 8.72022 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.009674 C = 0.007148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.358684 B = 2893.604204 C = 3916.055297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.284 1.284 5 H -0.314 1.314 6 H -0.241 1.241 7 C -0.320 4.320 8 H 0.071 0.929 9 N -0.460 5.460 10 C 0.451 3.549 11 O -0.589 6.589 12 C -0.112 4.112 13 H 0.149 0.851 14 C 0.108 3.892 15 N -0.710 5.710 16 C 0.525 3.475 17 O -0.577 6.577 18 C -0.143 4.143 19 C 0.115 3.885 20 C -0.135 4.135 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.135 4.135 24 H 0.268 0.732 25 H 0.061 0.939 26 H 0.137 0.863 27 H 0.425 0.575 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.096 0.904 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.227 -6.390 5.383 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.773 3.227 4 H -0.212 1.212 5 H -0.244 1.244 6 H -0.164 1.164 7 C -0.448 4.448 8 H 0.088 0.912 9 N -0.181 5.181 10 C 0.241 3.759 11 O -0.473 6.473 12 C -0.134 4.134 13 H 0.166 0.834 14 C -0.016 4.016 15 N -0.366 5.366 16 C 0.312 3.688 17 O -0.457 6.457 18 C -0.183 4.183 19 C 0.012 3.988 20 C -0.173 4.173 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.173 4.173 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.154 0.846 27 H 0.266 0.734 28 H 0.137 0.863 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.114 0.886 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.913 -5.772 4.643 17.553 hybrid contribution -0.644 1.230 0.025 1.388 sum 15.270 -4.542 4.668 16.601 Atomic orbital electron populations 1.69838 1.08175 1.28259 1.49124 1.25889 0.95206 1.01764 0.93110 0.85885 0.80041 0.80067 0.76701 1.21179 1.24358 1.16404 1.18517 0.85870 0.94164 1.46206 0.91164 1.43899 1.07663 1.44492 1.22039 1.20827 0.90578 0.83358 0.81124 1.90560 1.55841 1.45225 1.55714 1.22250 0.92024 1.03234 0.95886 0.83387 1.22421 0.88459 0.97356 0.93407 1.46091 1.21365 1.59609 1.09569 1.20918 0.87622 0.77643 0.82598 1.90707 1.59373 1.46212 1.49410 1.22245 0.94799 1.00924 1.00345 1.22357 0.92340 0.91498 0.92586 1.22693 1.00925 0.95061 0.98603 1.22416 1.02259 0.96767 0.93310 1.22268 1.00342 0.94723 0.98311 1.22535 1.01940 0.98672 0.94132 0.92267 0.92111 0.84576 0.73400 0.86343 0.89068 0.86562 0.93719 0.90086 0.88655 0.91738 0.89736 0.94358 0.88600 0.93948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.72 13.96 21.66 0.30 -56.42 16 2 C 0.04 2.51 4.85 84.93 0.41 2.92 16 3 Si 0.94 48.08 24.86 68.60 1.71 49.78 16 4 H -0.28 -15.76 6.34 99.48 0.63 -15.13 16 5 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 6 H -0.24 -10.56 6.33 99.48 0.63 -9.93 16 7 C -0.32 -16.85 8.35 84.04 0.70 -16.15 16 8 H 0.07 4.01 6.62 -2.91 -0.02 4.00 16 9 N -0.46 -18.86 2.06 -609.38 -1.26 -20.11 16 10 C 0.45 18.60 5.18 87.66 0.45 19.05 16 11 O -0.59 -30.81 11.22 -3.09 -0.03 -30.84 16 12 C -0.11 -3.13 2.53 -10.48 -0.03 -3.15 16 13 H 0.15 3.00 7.71 -2.39 -0.02 2.98 16 14 C 0.11 2.36 6.27 86.82 0.54 2.90 16 15 N -0.71 -15.41 6.24 -459.68 -2.87 -18.28 16 16 C 0.53 15.59 8.43 87.90 0.74 16.33 16 17 O -0.58 -21.21 18.03 -3.02 -0.05 -21.26 16 18 C -0.14 -4.37 6.19 30.59 0.19 -4.18 16 19 C 0.11 3.25 2.62 45.72 0.12 3.37 16 20 C -0.13 -3.63 6.40 31.67 0.20 -3.43 16 21 C -0.11 -2.27 6.91 31.88 0.22 -2.05 16 22 C -0.12 -2.87 6.83 31.67 0.22 -2.65 16 23 C -0.13 -3.59 6.30 31.32 0.20 -3.39 16 24 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 25 H 0.06 1.63 7.10 -2.39 -0.02 1.61 16 26 H 0.14 1.75 6.70 -2.39 -0.02 1.73 16 27 H 0.42 6.84 8.96 -92.71 -0.83 6.01 16 28 H 0.12 3.23 8.14 -2.38 -0.02 3.21 16 29 H 0.09 3.44 7.02 -2.39 -0.02 3.42 16 30 H 0.12 2.29 4.29 -2.39 -0.01 2.28 16 31 H 0.04 1.60 6.12 -2.39 -0.01 1.59 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 1.37 8.14 -2.38 -0.02 1.36 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.04 1.49 7.43 -2.39 -0.02 1.47 16 Total: -1.00 -77.58 294.26 1.87 -75.72 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.10 Total: 11.84 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 3.97 Total: 9.58 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -3.82 Total: -94.81 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.09 Total: -52.10 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.71 Total: 49.78 kcal Total: -77.58 1.87 -75.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125202274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.277 kcal (2) G-P(sol) polarization free energy of solvation -77.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds