Wall clock time and date at job start Mon Mar 30 2020 04:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35316 * 126.12645 * 2 1 4 4 C 1.50701 * 126.03780 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.46972 * 85.00455 * 4 3 2 6 6 C 1.50696 * 109.47298 * 179.97438 * 5 4 3 7 7 O 1.20833 * 119.99655 * 359.97438 * 6 5 4 8 8 O 1.34222 * 120.00432 * 180.27351 * 6 5 4 9 9 C 1.45201 * 117.00137 * 179.71953 * 8 6 5 10 10 H 1.08993 * 109.47491 * 330.00073 * 9 8 6 11 11 C 1.52996 * 109.46934 * 90.00375 * 9 8 6 12 12 C 1.50704 * 109.46907 * 209.99697 * 9 8 6 13 13 H 1.07998 * 120.00571 * 0.02562 * 12 9 8 14 14 C 1.37887 * 119.99671 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00086 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99784 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46979 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46605 * 120.00079 * 16 14 12 19 19 H 1.48499 * 109.47279 * 240.00292 * 16 14 12 20 20 C 1.39867 * 107.91619 * 180.28243 * 3 2 1 21 21 N 1.30838 * 108.20818 * 359.55945 * 20 3 2 22 22 N 1.34949 * 126.12254 * 180.02562 * 2 1 3 23 23 C 1.46502 * 126.04259 * 359.95090 * 22 2 1 24 24 H 1.09006 * 109.47208 * 90.00012 * 1 2 3 25 25 H 1.09004 * 109.47441 * 209.99629 * 1 2 3 26 26 H 1.08994 * 109.47396 * 329.99892 * 1 2 3 27 27 H 1.08994 * 109.47178 * 325.00032 * 4 3 2 28 28 H 1.09006 * 109.46629 * 204.99835 * 4 3 2 29 29 H 1.09000 * 109.47764 * 59.99413 * 5 4 3 30 30 H 1.09006 * 109.46938 * 299.99191 * 5 4 3 31 31 H 1.09004 * 109.47062 * 180.02562 * 11 9 8 32 32 H 1.09005 * 109.47320 * 299.99428 * 11 9 8 33 33 H 1.08999 * 109.47835 * 59.99944 * 11 9 8 34 34 H 0.96993 * 119.99970 * 179.97438 * 15 14 12 35 35 H 1.08001 * 125.89656 * 179.73572 * 20 3 2 36 36 H 1.08998 * 109.46487 * 90.00159 * 23 22 2 37 37 H 1.08997 * 109.46990 * 210.00204 * 23 22 2 38 38 H 1.08997 * 109.47040 * 330.00556 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8432 2.5276 0.0005 5 6 1.5680 2.9741 1.4378 6 6 1.1070 4.4089 1.4384 7 8 1.0092 5.0124 0.3962 8 8 0.8109 5.0182 2.5972 9 6 0.3793 6.4025 2.5225 10 1 0.8449 6.8824 1.6618 11 6 -1.1426 6.4549 2.3743 12 6 0.7865 7.1242 3.7814 13 1 1.3169 6.5954 4.5594 14 6 0.4827 8.4598 3.9392 15 7 -0.1629 9.1039 2.9915 16 14 0.9867 9.3542 5.4999 17 1 1.6952 8.4123 6.4033 18 1 1.8894 10.4817 5.1545 19 1 -0.2231 9.8796 6.1820 20 6 3.6334 0.6559 -0.0066 21 7 3.6334 -0.6525 -0.0008 22 7 2.3026 -1.0901 -0.0005 23 6 1.8539 -2.4847 -0.0001 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 0.9304 2.6157 -0.5885 28 1 2.6185 3.1588 -0.4339 29 1 2.4808 2.8859 2.0269 30 1 0.7927 2.3429 1.8722 31 1 -1.4666 7.4942 2.3179 32 1 -1.4372 5.9330 1.4638 33 1 -1.6083 5.9751 3.2351 34 1 -0.3769 10.0433 3.1028 35 1 4.5083 1.2891 -0.0122 36 1 1.7419 -2.8305 -1.0277 37 1 2.5901 -3.1031 0.5133 38 1 0.8957 -2.5579 0.5143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126030251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:42 Heat of formation + Delta-G solvation = -28.705052 kcal Electronic energy + Delta-G solvation = -19707.641851 eV Core-core repulsion = 16551.578994 eV Total energy + Delta-G solvation = -3156.062857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.42503 -39.42430 -35.87131 -34.31358 -33.37214 -33.20697 -31.04138 -29.52980 -27.34519 -26.84326 -25.29839 -24.05866 -21.43042 -20.85509 -19.50588 -19.23676 -16.99939 -16.60170 -16.38978 -15.83573 -15.45901 -15.20705 -14.45258 -14.33828 -14.05563 -13.48085 -13.34311 -12.97835 -12.78307 -12.71187 -12.43281 -12.24509 -12.09385 -11.82557 -11.55885 -11.16984 -11.08808 -10.97689 -10.78155 -10.48797 -10.32554 -10.26039 -9.57199 -9.47192 -9.36405 -8.86102 -8.47125 -8.34119 -6.16224 -4.22744 1.73224 2.37115 2.68772 3.09840 3.25116 3.31879 3.37153 3.82048 4.33487 4.38306 4.50920 4.82055 4.87550 5.00763 5.12226 5.16804 5.19912 5.24605 5.32905 5.44261 5.58689 5.67849 5.80446 5.92956 6.02957 6.28882 6.33950 6.59748 6.67960 6.90426 6.91244 6.95369 7.23229 7.61008 7.63636 7.76735 7.98681 8.18306 8.69794 8.94295 9.42850 10.91298 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040119 B = 0.003374 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.759042 B = 8297.160769 C = 8495.157902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.086 3.914 3 C -0.232 4.232 4 C -0.027 4.027 5 C -0.109 4.109 6 C 0.450 3.550 7 O -0.524 6.524 8 O -0.359 6.359 9 C 0.214 3.786 10 H 0.046 0.954 11 C -0.154 4.154 12 C -0.520 4.520 13 H 0.069 0.931 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.911 3.089 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.057 3.943 21 N -0.303 5.303 22 N -0.378 5.378 23 C 0.102 3.898 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.015 0.985 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.184 0.816 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.282 -19.913 -5.447 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.243 4.243 4 C -0.065 4.065 5 C -0.148 4.148 6 C 0.293 3.707 7 O -0.415 6.415 8 O -0.275 6.275 9 C 0.161 3.839 10 H 0.064 0.936 11 C -0.212 4.212 12 C -0.558 4.558 13 H 0.087 0.913 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.738 3.262 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.129 4.129 21 N -0.123 5.123 22 N -0.161 5.161 23 C -0.040 4.040 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.035 0.965 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.201 0.799 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.839 -20.732 -5.757 21.595 hybrid contribution -0.284 1.274 0.706 1.484 sum 1.554 -19.458 -5.050 20.163 Atomic orbital electron populations 1.20505 0.87311 1.04029 1.03463 1.20888 0.94521 0.87052 1.01683 1.19842 0.92385 0.95396 1.16707 1.19644 1.02369 0.89687 0.94832 1.21346 1.03493 0.90623 0.99295 1.23468 0.74447 0.89822 0.82990 1.90592 1.50338 1.66932 1.33620 1.86485 1.75710 1.32263 1.33072 1.20606 0.91970 0.72281 0.98998 0.93582 1.22153 0.97707 1.04053 0.97276 1.21092 1.37686 0.94536 1.02477 0.91288 1.24897 0.94885 0.96931 0.97346 1.69909 1.39651 1.10339 1.32861 0.86229 0.78324 0.79394 0.82249 1.19472 1.20765 1.20744 1.23821 0.97850 0.91918 0.99262 1.77348 0.96492 1.13080 1.25407 1.48373 1.04022 1.05832 1.57889 1.21796 1.00962 0.78052 1.03145 0.90092 0.91216 0.89199 0.90645 0.90178 0.88333 0.88804 0.88318 0.96541 0.94507 0.92493 0.79926 0.90953 0.89408 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 9.80 36.01 0.35 -0.39 16 2 C 0.09 0.94 6.93 -82.26 -0.57 0.37 16 3 C -0.23 -2.85 5.35 -105.05 -0.56 -3.41 16 4 C -0.03 -0.35 4.54 -27.88 -0.13 -0.48 16 5 C -0.11 -1.60 5.79 -27.89 -0.16 -1.76 16 6 C 0.45 9.25 7.93 36.00 0.29 9.53 16 7 O -0.52 -12.17 15.20 -18.76 -0.29 -12.46 16 8 O -0.36 -8.61 9.86 -39.24 -0.39 -9.00 16 9 C 0.21 5.81 2.56 -27.88 -0.07 5.74 16 10 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 11 C -0.15 -3.94 9.32 37.16 0.35 -3.59 16 12 C -0.52 -14.77 8.90 -34.43 -0.31 -15.08 16 13 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 16 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.06 0.70 11.96 -17.37 -0.21 0.50 16 21 N -0.30 -3.97 12.58 30.62 0.39 -3.58 16 22 N -0.38 -4.16 4.01 -63.89 -0.26 -4.41 16 23 C 0.10 0.66 11.27 59.85 0.67 1.33 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.41 7.08 -51.93 -0.37 0.04 16 26 H 0.09 0.74 7.51 -51.93 -0.39 0.35 16 27 H 0.07 1.01 7.97 -51.93 -0.41 0.59 16 28 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 29 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.09 1.20 7.77 -51.93 -0.40 0.80 16 31 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.36 7.05 -51.93 -0.37 0.00 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -33.68 325.24 -6.03 -39.71 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.55 Total: -0.87 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.44 Total: -5.63 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.76 Total: -32.84 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.67 Total: -21.46 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.68 -6.03 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126030251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.002 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds