Wall clock time and date at job start Mon Mar 30 2020 04:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35316 * 126.12645 * 2 1 4 4 C 1.50701 * 126.03780 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.46972 * 85.00455 * 4 3 2 6 6 C 1.50696 * 109.47298 * 179.97438 * 5 4 3 7 7 O 1.20833 * 119.99655 * 359.97438 * 6 5 4 8 8 O 1.34222 * 120.00432 * 180.27351 * 6 5 4 9 9 C 1.45201 * 117.00137 * 179.71953 * 8 6 5 10 10 H 1.08993 * 109.47491 * 330.00073 * 9 8 6 11 11 C 1.52996 * 109.46934 * 90.00375 * 9 8 6 12 12 C 1.50704 * 109.46907 * 209.99697 * 9 8 6 13 13 H 1.07998 * 120.00571 * 0.02562 * 12 9 8 14 14 C 1.37887 * 119.99671 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00086 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99784 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46979 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46605 * 120.00079 * 16 14 12 19 19 H 1.48499 * 109.47279 * 240.00292 * 16 14 12 20 20 C 1.39867 * 107.91619 * 180.28243 * 3 2 1 21 21 N 1.30838 * 108.20818 * 359.55945 * 20 3 2 22 22 N 1.34949 * 126.12254 * 180.02562 * 2 1 3 23 23 C 1.46502 * 126.04259 * 359.95090 * 22 2 1 24 24 H 1.09006 * 109.47208 * 90.00012 * 1 2 3 25 25 H 1.09004 * 109.47441 * 209.99629 * 1 2 3 26 26 H 1.08994 * 109.47396 * 329.99892 * 1 2 3 27 27 H 1.08994 * 109.47178 * 325.00032 * 4 3 2 28 28 H 1.09006 * 109.46629 * 204.99835 * 4 3 2 29 29 H 1.09000 * 109.47764 * 59.99413 * 5 4 3 30 30 H 1.09006 * 109.46938 * 299.99191 * 5 4 3 31 31 H 1.09004 * 109.47062 * 180.02562 * 11 9 8 32 32 H 1.09005 * 109.47320 * 299.99428 * 11 9 8 33 33 H 1.08999 * 109.47835 * 59.99944 * 11 9 8 34 34 H 0.96993 * 119.99970 * 179.97438 * 15 14 12 35 35 H 1.08001 * 125.89656 * 179.73572 * 20 3 2 36 36 H 1.08998 * 109.46487 * 90.00159 * 23 22 2 37 37 H 1.08997 * 109.46990 * 210.00204 * 23 22 2 38 38 H 1.08997 * 109.47040 * 330.00556 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8432 2.5276 0.0005 5 6 1.5680 2.9741 1.4378 6 6 1.1070 4.4089 1.4384 7 8 1.0092 5.0124 0.3962 8 8 0.8109 5.0182 2.5972 9 6 0.3793 6.4025 2.5225 10 1 0.8449 6.8824 1.6618 11 6 -1.1426 6.4549 2.3743 12 6 0.7865 7.1242 3.7814 13 1 1.3169 6.5954 4.5594 14 6 0.4827 8.4598 3.9392 15 7 -0.1629 9.1039 2.9915 16 14 0.9867 9.3542 5.4999 17 1 1.6952 8.4123 6.4033 18 1 1.8894 10.4817 5.1545 19 1 -0.2231 9.8796 6.1820 20 6 3.6334 0.6559 -0.0066 21 7 3.6334 -0.6525 -0.0008 22 7 2.3026 -1.0901 -0.0005 23 6 1.8539 -2.4847 -0.0001 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 0.9304 2.6157 -0.5885 28 1 2.6185 3.1588 -0.4339 29 1 2.4808 2.8859 2.0269 30 1 0.7927 2.3429 1.8722 31 1 -1.4666 7.4942 2.3179 32 1 -1.4372 5.9330 1.4638 33 1 -1.6083 5.9751 3.2351 34 1 -0.3769 10.0433 3.1028 35 1 4.5083 1.2891 -0.0122 36 1 1.7419 -2.8305 -1.0277 37 1 2.5901 -3.1031 0.5133 38 1 0.8957 -2.5579 0.5143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126030251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:42 Heat of formation + Delta-G solvation = -48.868991 kcal Electronic energy + Delta-G solvation = -19708.516225 eV Core-core repulsion = 16551.578994 eV Total energy + Delta-G solvation = -3156.937231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.27679 -41.18395 -37.68679 -35.39154 -35.28359 -34.17118 -32.12015 -31.40182 -28.31900 -27.51414 -27.43175 -25.26672 -23.18676 -21.75269 -21.16052 -20.17814 -18.80561 -18.41550 -17.44849 -17.15478 -16.95471 -16.56148 -16.14064 -15.26241 -15.16373 -14.84203 -14.27868 -14.18681 -13.98290 -13.82436 -13.47585 -13.42662 -13.19123 -13.06890 -12.99009 -12.93759 -12.78335 -12.64671 -12.36610 -12.13033 -12.06691 -11.54214 -11.43851 -11.26230 -10.94759 -10.58478 -10.17089 -9.23315 -8.27557 -6.44251 0.90595 1.41859 1.43375 1.44416 1.57512 1.66817 1.74990 2.17980 2.46773 3.03011 3.64874 3.81443 3.93278 4.11244 4.21105 4.30257 4.39792 4.43959 4.52190 4.61049 4.64790 4.70378 4.76395 4.77287 4.81476 4.87594 5.07750 5.11592 5.22185 5.24893 5.35225 5.51277 5.66700 5.71542 5.96252 6.14839 6.17500 6.62158 6.75248 7.04267 7.28711 8.80309 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040119 B = 0.003374 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.759042 B = 8297.160769 C = 8495.157902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.092 3.908 3 C -0.254 4.254 4 C -0.014 4.014 5 C -0.094 4.094 6 C 0.445 3.555 7 O -0.554 6.554 8 O -0.367 6.367 9 C 0.215 3.785 10 H 0.007 0.993 11 C -0.141 4.141 12 C -0.549 4.549 13 H 0.067 0.933 14 C 0.015 3.985 15 N -0.917 5.917 16 Si 0.983 3.017 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.271 1.271 20 C 0.048 3.952 21 N -0.334 5.334 22 N -0.379 5.379 23 C 0.091 3.909 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.046 0.954 34 H 0.271 0.729 35 H 0.196 0.804 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 -21.410 -4.469 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.037 4.037 3 C -0.266 4.266 4 C -0.053 4.053 5 C -0.132 4.132 6 C 0.290 3.710 7 O -0.446 6.446 8 O -0.284 6.284 9 C 0.162 3.838 10 H 0.024 0.976 11 C -0.199 4.199 12 C -0.586 4.586 13 H 0.085 0.915 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.806 3.194 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.196 1.196 20 C -0.137 4.137 21 N -0.155 5.155 22 N -0.162 5.162 23 C -0.049 4.049 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.098 0.902 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.213 0.787 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.400 -22.270 -4.792 22.823 hybrid contribution -0.157 1.646 0.311 1.682 sum 1.243 -20.625 -4.481 21.143 Atomic orbital electron populations 1.20637 0.85050 1.05115 1.04557 1.21338 0.95869 0.86699 0.99774 1.19757 0.92766 0.95017 1.19018 1.19466 1.01867 0.90393 0.93589 1.21469 1.04564 0.86288 1.00851 1.24671 0.73178 0.91593 0.81567 1.90577 1.51532 1.68115 1.34395 1.86481 1.76279 1.30694 1.34948 1.20314 0.92487 0.73830 0.97152 0.97551 1.21972 0.96800 1.03024 0.98135 1.21363 1.38786 0.95541 1.02943 0.91526 1.25842 0.94387 0.97452 1.00761 1.70024 1.39934 1.10857 1.34707 0.85132 0.78305 0.77979 0.77964 1.18742 1.20163 1.19607 1.24107 0.98544 0.92054 0.99009 1.77293 0.98164 1.13427 1.26662 1.48741 1.03343 1.07332 1.56804 1.22175 1.02258 0.75915 1.04556 0.88918 0.88699 0.89540 0.90960 0.91328 0.86878 0.86251 0.90224 0.95556 0.93512 0.92011 0.78747 0.89590 0.89054 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.80 71.24 0.70 -0.52 16 2 C 0.09 1.81 6.93 41.41 0.29 2.10 16 3 C -0.25 -5.93 5.35 -20.14 -0.11 -6.04 16 4 C -0.01 -0.37 4.54 29.85 0.14 -0.23 16 5 C -0.09 -2.63 5.79 29.85 0.17 -2.46 16 6 C 0.44 18.34 7.93 71.23 0.56 18.91 16 7 O -0.55 -26.32 15.20 21.94 0.33 -25.99 16 8 O -0.37 -17.77 9.86 -51.34 -0.51 -18.28 16 9 C 0.22 11.98 2.56 29.85 0.08 12.06 16 10 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 11 C -0.14 -7.32 9.32 71.98 0.67 -6.65 16 12 C -0.55 -31.54 8.90 25.60 0.23 -31.31 16 13 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 14 C 0.02 0.84 5.30 84.66 0.45 1.29 16 15 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 16 Si 0.98 43.12 29.54 68.60 2.03 45.14 16 17 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 C 0.05 1.14 11.96 85.24 1.02 2.16 16 21 N -0.33 -8.44 12.58 -57.02 -0.72 -9.15 16 22 N -0.38 -7.58 4.01 -356.03 -1.43 -9.00 16 23 C 0.09 0.93 11.27 127.77 1.44 2.37 16 24 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.09 0.73 7.08 -2.38 -0.02 0.71 16 26 H 0.09 1.20 7.51 -2.39 -0.02 1.18 16 27 H 0.07 1.88 7.97 -2.39 -0.02 1.86 16 28 H 0.07 1.89 8.10 -2.38 -0.02 1.87 16 29 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.12 2.77 7.77 -2.38 -0.02 2.75 16 31 H 0.08 4.42 6.07 -2.38 -0.01 4.41 16 32 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.20 3.80 8.06 -2.91 -0.02 3.77 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 0.54 7.05 -2.39 -0.02 0.52 16 Total: -1.00 -73.43 325.24 6.63 -66.80 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.05 Total: 11.59 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 5.63 Total: -8.32 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.90 Total: -70.95 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.17 Total: -44.27 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -73.43 6.63 -66.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126030251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.926 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds