Wall clock time and date at job start Mon Mar 30 2020 04:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48501 * 109.46951 * 239.99896 * 3 2 1 5 5 H 1.48504 * 109.46792 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47036 * 119.99805 * 3 2 1 7 7 C 1.39885 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00445 * 195.15731 * 7 2 1 9 9 C 1.41028 * 119.99939 * 15.16030 * 7 2 1 10 10 C 1.40665 * 120.26769 * 25.75006 * 9 7 2 11 11 C 1.38009 * 119.76892 * 180.22723 * 10 9 7 12 12 N 1.39854 * 119.83606 * 179.77591 * 11 10 9 13 13 C 1.46504 * 119.99480 * 179.72902 * 12 11 10 14 14 C 1.53003 * 109.47069 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.47057 * 64.99539 * 14 13 12 16 16 C 1.42899 * 114.00283 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47256 * 180.02562 * 16 15 14 18 18 O 1.42906 * 109.47197 * 65.00520 * 17 16 15 19 19 C 1.39599 * 120.32091 * 359.50442 * 11 10 9 20 20 C 1.38055 * 120.54915 * 0.22624 * 19 11 10 21 21 C 1.38736 * 120.22174 * 0.02562 * 20 19 11 22 22 N 1.38861 * 120.16293 * 179.97438 * 21 20 19 23 23 H 0.97002 * 119.99521 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.11655 * 0.02562 * 10 9 7 25 25 H 0.96993 * 120.00467 * 359.73048 * 12 11 10 26 26 H 1.09003 * 109.47527 * 59.99987 * 13 12 11 27 27 H 1.09003 * 109.47188 * 299.99760 * 13 12 11 28 28 H 1.08999 * 109.47588 * 184.99884 * 14 13 12 29 29 H 1.09004 * 109.47044 * 305.00442 * 14 13 12 30 30 H 1.09005 * 109.47192 * 300.00849 * 16 15 14 31 31 H 1.09004 * 109.46609 * 60.00386 * 16 15 14 32 32 H 1.09011 * 109.47031 * 185.00197 * 17 16 15 33 33 H 1.08998 * 109.47342 * 305.00069 * 17 16 15 34 34 H 0.96696 * 113.99741 * 179.97438 * 18 17 16 35 35 H 1.08004 * 119.72590 * 180.25375 * 19 11 10 36 36 H 1.08004 * 119.88727 * 180.02562 * 20 19 11 37 37 H 0.97001 * 120.00296 * 0.02562 * 22 21 20 38 38 H 0.97005 * 120.00074 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6962 -1.2125 5 1 1.2781 2.7464 0.0006 6 1 3.0969 1.6963 1.2126 7 6 2.0084 -1.2115 0.0005 8 1 3.0602 -1.2277 0.2451 9 6 1.3401 -2.4117 -0.3183 10 6 0.1924 -2.3897 -1.1314 11 6 -0.4563 -3.5698 -1.4332 12 7 -1.6002 -3.5490 -2.2376 13 6 -2.2881 -4.8004 -2.5650 14 6 -3.4992 -4.5000 -3.4504 15 8 -3.0550 -3.9739 -4.7026 16 6 -4.1138 -3.6585 -5.6090 17 6 -3.5249 -3.1070 -6.9089 18 8 -2.7635 -4.1276 -7.5577 19 6 0.0269 -4.7847 -0.9439 20 6 1.1553 -4.8222 -0.1494 21 6 1.8222 -3.6489 0.1723 22 7 2.9568 -3.6880 0.9720 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1816 -1.4521 -1.5156 25 1 -1.9379 -2.7063 -2.5788 26 1 -2.6211 -5.2832 -1.6461 27 1 -1.6045 -5.4626 -3.0962 28 1 -4.0614 -5.4181 -3.6209 29 1 -4.1387 -3.7689 -2.9555 30 1 -4.6884 -4.5595 -5.8242 31 1 -4.7663 -2.9102 -5.1591 32 1 -4.3329 -2.7838 -7.5655 33 1 -2.8784 -2.2588 -6.6839 34 1 -2.3600 -3.8477 -8.3907 35 1 -0.4859 -5.7029 -1.1894 36 1 1.5201 -5.7681 0.2229 37 1 3.2851 -4.5371 1.3068 38 1 3.4214 -2.8663 1.1951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127361446.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:36 Heat of formation + Delta-G solvation = -73.107155 kcal Electronic energy + Delta-G solvation = -19694.936984 eV Core-core repulsion = 16536.948707 eV Total energy + Delta-G solvation = -3157.988276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.42795 -37.74883 -36.55658 -35.05174 -33.39780 -32.08727 -29.99635 -29.33765 -28.31960 -25.67371 -24.62324 -22.56370 -22.31167 -20.75872 -19.59849 -17.78720 -17.06977 -16.87078 -16.09880 -15.68560 -15.37371 -14.95610 -14.72691 -14.53350 -14.40677 -13.77120 -13.18369 -12.95698 -12.55789 -12.34417 -12.09125 -11.71354 -11.66486 -11.27258 -11.17837 -11.09760 -10.95662 -10.91095 -10.33357 -10.18576 -9.83430 -9.66247 -9.57695 -9.25870 -9.00105 -7.67453 -7.15035 -6.55058 -5.44885 -4.00844 2.97179 3.15206 3.18575 3.37342 3.55171 3.66914 4.07521 4.10729 4.53424 4.88238 4.91458 5.04938 5.14314 5.36109 5.38408 5.41276 5.47600 5.53064 5.64799 5.93823 6.10666 6.25517 6.43572 6.70497 7.18451 7.20843 7.24846 7.38775 7.49822 7.56891 7.77562 7.95707 8.08641 8.19585 8.52444 8.83629 8.97852 9.02570 9.07273 9.32522 9.41149 10.43441 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.004690 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.829682 B = 5969.233035 C = 7058.365460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.464 4.464 8 H 0.070 0.930 9 C 0.095 3.905 10 C -0.200 4.200 11 C 0.178 3.822 12 N -0.757 5.757 13 C 0.142 3.858 14 C 0.052 3.948 15 O -0.371 6.371 16 C 0.060 3.940 17 C 0.078 3.922 18 O -0.566 6.566 19 C -0.256 4.256 20 C -0.152 4.152 21 C 0.083 3.917 22 N -0.889 5.889 23 H 0.274 0.726 24 H 0.119 0.881 25 H 0.390 0.610 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.377 0.623 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 -3.689 -8.928 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.495 4.495 8 H 0.088 0.912 9 C 0.090 3.910 10 C -0.225 4.225 11 C 0.080 3.920 12 N -0.393 5.393 13 C 0.017 3.983 14 C -0.025 4.025 15 O -0.290 6.290 16 C -0.017 4.017 17 C 0.000 4.000 18 O -0.371 6.371 19 C -0.280 4.280 20 C -0.177 4.177 21 C -0.018 4.018 22 N -0.432 5.432 23 H 0.085 0.915 24 H 0.137 0.863 25 H 0.223 0.777 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.198 0.802 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.789 -4.018 -8.486 12.200 hybrid contribution 0.271 1.368 -0.273 1.421 sum -7.518 -2.651 -8.760 11.844 Atomic orbital electron populations 1.69878 1.07222 1.28312 1.37518 1.25739 0.94670 1.00613 0.92920 0.86484 0.80080 0.81083 0.79591 1.19191 1.20664 1.19389 1.19100 0.96505 0.91056 1.42864 0.91199 1.16963 0.92679 0.90245 0.91158 1.20524 1.00949 0.95199 1.05799 1.17534 0.87383 0.94163 0.92939 1.44216 1.30317 1.06283 1.58465 1.21008 0.92299 0.89149 0.95880 1.22807 0.97294 0.97748 0.84634 1.88069 1.31365 1.84130 1.25435 1.22502 0.90324 0.99447 0.89394 1.22190 0.94811 0.90769 0.92256 1.86572 1.70504 1.39448 1.40540 1.19610 1.02410 0.94426 1.11563 1.19694 0.98637 0.94578 1.04757 1.17851 0.91598 0.93925 0.98390 1.41800 1.31803 1.09083 1.60532 0.91504 0.86335 0.77715 0.92170 0.92708 0.92671 0.93006 0.92952 0.92075 0.92480 0.92519 0.77606 0.89764 0.89823 0.80155 0.78391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.41 10.88 55.55 0.60 -20.81 16 2 C 0.08 1.96 5.18 -17.33 -0.09 1.87 16 3 Si 0.90 19.30 29.59 -169.99 -5.03 14.27 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.49 8.50 -37.91 -0.32 -12.81 16 8 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 9 C 0.09 2.59 5.58 -106.66 -0.60 2.00 16 10 C -0.20 -5.40 8.50 -38.75 -0.33 -5.73 16 11 C 0.18 4.37 6.64 -83.77 -0.56 3.81 16 12 N -0.76 -15.59 5.68 -58.63 -0.33 -15.92 16 13 C 0.14 2.39 5.29 -4.04 -0.02 2.37 16 14 C 0.05 0.71 6.07 37.16 0.23 0.94 16 15 O -0.37 -5.68 10.25 -40.08 -0.41 -6.09 16 16 C 0.06 0.69 6.32 37.15 0.23 0.92 16 17 C 0.08 0.79 7.43 37.15 0.28 1.07 16 18 O -0.57 -6.66 13.63 -40.08 -0.55 -7.21 16 19 C -0.26 -6.08 9.31 -39.14 -0.36 -6.44 16 20 C -0.15 -3.63 9.86 -39.46 -0.39 -4.02 16 21 C 0.08 2.08 6.79 -83.23 -0.56 1.52 16 22 N -0.89 -18.79 8.98 32.75 0.29 -18.50 16 23 H 0.27 6.75 8.30 -40.82 -0.34 6.41 16 24 H 0.12 3.32 6.15 -52.49 -0.32 3.00 16 25 H 0.39 7.86 8.48 -40.82 -0.35 7.51 16 26 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 27 H 0.05 0.97 7.94 -51.93 -0.41 0.56 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.38 2.57 9.12 45.56 0.42 2.98 16 35 H 0.08 1.81 6.69 -52.48 -0.35 1.46 16 36 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.37 6.69 8.83 -40.82 -0.36 6.33 16 38 H 0.39 8.02 7.04 -40.82 -0.29 7.74 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -32.15 319.87 -7.62 -39.77 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -4.52 Total: 24.17 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -2.50 Total: -14.50 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.57 Total: -55.23 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.96 Total: -13.30 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.15 -7.62 -39.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127361446.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.337 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds