Wall clock time and date at job start Mon Mar 30 2020 04:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48501 * 109.46951 * 239.99896 * 3 2 1 5 5 H 1.48504 * 109.46792 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47036 * 119.99805 * 3 2 1 7 7 C 1.39885 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00445 * 195.15731 * 7 2 1 9 9 C 1.41028 * 119.99939 * 15.16030 * 7 2 1 10 10 C 1.40665 * 120.26769 * 25.75006 * 9 7 2 11 11 C 1.38009 * 119.76892 * 180.22723 * 10 9 7 12 12 N 1.39854 * 119.83606 * 179.77591 * 11 10 9 13 13 C 1.46504 * 119.99480 * 179.72902 * 12 11 10 14 14 C 1.53003 * 109.47069 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.47057 * 64.99539 * 14 13 12 16 16 C 1.42899 * 114.00283 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47256 * 180.02562 * 16 15 14 18 18 O 1.42906 * 109.47197 * 65.00520 * 17 16 15 19 19 C 1.39599 * 120.32091 * 359.50442 * 11 10 9 20 20 C 1.38055 * 120.54915 * 0.22624 * 19 11 10 21 21 C 1.38736 * 120.22174 * 0.02562 * 20 19 11 22 22 N 1.38861 * 120.16293 * 179.97438 * 21 20 19 23 23 H 0.97002 * 119.99521 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.11655 * 0.02562 * 10 9 7 25 25 H 0.96993 * 120.00467 * 359.73048 * 12 11 10 26 26 H 1.09003 * 109.47527 * 59.99987 * 13 12 11 27 27 H 1.09003 * 109.47188 * 299.99760 * 13 12 11 28 28 H 1.08999 * 109.47588 * 184.99884 * 14 13 12 29 29 H 1.09004 * 109.47044 * 305.00442 * 14 13 12 30 30 H 1.09005 * 109.47192 * 300.00849 * 16 15 14 31 31 H 1.09004 * 109.46609 * 60.00386 * 16 15 14 32 32 H 1.09011 * 109.47031 * 185.00197 * 17 16 15 33 33 H 1.08998 * 109.47342 * 305.00069 * 17 16 15 34 34 H 0.96696 * 113.99741 * 179.97438 * 18 17 16 35 35 H 1.08004 * 119.72590 * 180.25375 * 19 11 10 36 36 H 1.08004 * 119.88727 * 180.02562 * 20 19 11 37 37 H 0.97001 * 120.00296 * 0.02562 * 22 21 20 38 38 H 0.97005 * 120.00074 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6962 -1.2125 5 1 1.2781 2.7464 0.0006 6 1 3.0969 1.6963 1.2126 7 6 2.0084 -1.2115 0.0005 8 1 3.0602 -1.2277 0.2451 9 6 1.3401 -2.4117 -0.3183 10 6 0.1924 -2.3897 -1.1314 11 6 -0.4563 -3.5698 -1.4332 12 7 -1.6002 -3.5490 -2.2376 13 6 -2.2881 -4.8004 -2.5650 14 6 -3.4992 -4.5000 -3.4504 15 8 -3.0550 -3.9739 -4.7026 16 6 -4.1138 -3.6585 -5.6090 17 6 -3.5249 -3.1070 -6.9089 18 8 -2.7635 -4.1276 -7.5577 19 6 0.0269 -4.7847 -0.9439 20 6 1.1553 -4.8222 -0.1494 21 6 1.8222 -3.6489 0.1723 22 7 2.9568 -3.6880 0.9720 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1816 -1.4521 -1.5156 25 1 -1.9379 -2.7063 -2.5788 26 1 -2.6211 -5.2832 -1.6461 27 1 -1.6045 -5.4626 -3.0962 28 1 -4.0614 -5.4181 -3.6209 29 1 -4.1387 -3.7689 -2.9555 30 1 -4.6884 -4.5595 -5.8242 31 1 -4.7663 -2.9102 -5.1591 32 1 -4.3329 -2.7838 -7.5655 33 1 -2.8784 -2.2588 -6.6839 34 1 -2.3600 -3.8477 -8.3907 35 1 -0.4859 -5.7029 -1.1894 36 1 1.5201 -5.7681 0.2229 37 1 3.2851 -4.5371 1.3068 38 1 3.4214 -2.8663 1.1951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127361446.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:35 Heat of formation + Delta-G solvation = -98.636597 kcal Electronic energy + Delta-G solvation = -19696.044023 eV Core-core repulsion = 16536.948707 eV Total energy + Delta-G solvation = -3159.095316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.82984 -39.19817 -37.54763 -36.60329 -35.31610 -33.68647 -31.29312 -31.14366 -29.60791 -27.41891 -26.46414 -23.78908 -23.39793 -22.52398 -21.42541 -18.95762 -18.58642 -17.95259 -17.78188 -17.23826 -16.93641 -16.44214 -16.36113 -15.84084 -15.43845 -15.08077 -14.60505 -14.41391 -14.21003 -13.76471 -13.74466 -13.43310 -13.16123 -12.87384 -12.85586 -12.66273 -12.26792 -12.08566 -11.99017 -11.69885 -11.37530 -11.16775 -10.98250 -10.91863 -10.57591 -9.38621 -9.12315 -8.47596 -7.27592 -5.99221 1.14699 1.41412 1.50969 1.54191 1.67815 2.28339 2.69490 2.93289 3.02274 3.40858 3.78836 3.98808 4.00316 4.22009 4.25252 4.29459 4.46103 4.51202 4.60173 4.63399 4.81493 4.84455 4.88107 4.94974 5.24879 5.36797 5.44874 5.68662 5.90584 6.08073 6.18852 6.25889 6.31495 6.58441 6.89929 6.98564 7.07918 7.15344 7.28393 7.49342 7.68732 8.52843 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.004690 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.829682 B = 5969.233035 C = 7058.365460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.493 4.493 8 H 0.075 0.925 9 C 0.061 3.939 10 C -0.227 4.227 11 C 0.172 3.828 12 N -0.755 5.755 13 C 0.139 3.861 14 C 0.059 3.941 15 O -0.405 6.405 16 C 0.051 3.949 17 C 0.074 3.926 18 O -0.593 6.593 19 C -0.261 4.261 20 C -0.157 4.157 21 C 0.068 3.932 22 N -0.879 5.879 23 H 0.279 0.721 24 H 0.098 0.902 25 H 0.389 0.611 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.395 0.605 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.390 0.610 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 -4.028 -9.263 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.525 4.525 8 H 0.093 0.907 9 C 0.055 3.945 10 C -0.252 4.252 11 C 0.072 3.928 12 N -0.389 5.389 13 C 0.014 3.986 14 C -0.018 4.018 15 O -0.325 6.325 16 C -0.025 4.025 17 C -0.003 4.003 18 O -0.402 6.402 19 C -0.285 4.285 20 C -0.182 4.182 21 C -0.034 4.034 22 N -0.423 5.423 23 H 0.089 0.911 24 H 0.116 0.884 25 H 0.222 0.778 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.245 0.755 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.218 0.782 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.269 -4.388 -8.834 12.871 hybrid contribution 0.363 1.374 -0.224 1.439 sum -7.906 -3.014 -9.058 12.395 Atomic orbital electron populations 1.69968 1.08724 1.29409 1.38099 1.26588 0.95445 1.03934 0.92058 0.85354 0.78671 0.76474 0.79696 1.19087 1.19880 1.18399 1.19386 0.96906 0.91971 1.44192 0.90743 1.17365 0.93462 0.91618 0.92020 1.20496 1.02112 0.95340 1.07269 1.17677 0.88270 0.93770 0.93125 1.44327 1.29393 1.07781 1.57434 1.21200 0.93091 0.87321 0.96984 1.22756 0.95754 0.99346 0.83936 1.88021 1.33660 1.84550 1.26285 1.22797 0.89922 1.00523 0.89293 1.22335 0.95577 0.89941 0.92484 1.86511 1.71101 1.40598 1.41943 1.19930 1.02519 0.94940 1.11082 1.20051 0.98417 0.95374 1.04321 1.18024 0.92743 0.93667 0.98948 1.41668 1.30717 1.10147 1.59775 0.91084 0.88436 0.77849 0.91096 0.93718 0.89887 0.91995 0.92072 0.90144 0.89016 0.93571 0.75517 0.87480 0.87027 0.78194 0.78219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.67 10.88 21.82 0.24 -45.43 16 2 C 0.03 1.69 5.18 85.23 0.44 2.13 16 3 Si 0.98 39.90 29.59 68.60 2.03 41.93 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.49 -27.10 8.50 23.35 0.20 -26.90 16 8 H 0.07 3.85 6.67 -2.91 -0.02 3.83 16 9 C 0.06 3.39 5.58 -21.18 -0.12 3.27 16 10 C -0.23 -12.67 8.50 22.81 0.19 -12.48 16 11 C 0.17 8.52 6.64 38.14 0.25 8.77 16 12 N -0.76 -31.18 5.68 -339.41 -1.93 -33.11 16 13 C 0.14 4.50 5.29 86.38 0.46 4.96 16 14 C 0.06 1.50 6.07 71.98 0.44 1.93 16 15 O -0.41 -11.98 10.25 -144.35 -1.48 -13.46 16 16 C 0.05 1.07 6.32 71.98 0.45 1.52 16 17 C 0.07 1.41 7.43 71.98 0.53 1.94 16 18 O -0.59 -13.34 13.63 -144.35 -1.97 -15.31 16 19 C -0.26 -12.17 9.31 22.55 0.21 -11.96 16 20 C -0.16 -7.32 9.86 22.35 0.22 -7.10 16 21 C 0.07 3.41 6.79 38.97 0.26 3.67 16 22 N -0.88 -36.50 8.98 -50.31 -0.45 -36.95 16 23 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 24 H 0.10 5.73 6.15 -2.91 -0.02 5.71 16 25 H 0.39 15.96 8.48 -92.71 -0.79 15.17 16 26 H 0.07 2.16 7.94 -2.39 -0.02 2.14 16 27 H 0.04 1.55 7.94 -2.39 -0.02 1.53 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.40 5.00 9.12 -74.06 -0.68 4.33 16 35 H 0.11 4.42 6.69 -2.91 -0.02 4.40 16 36 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 37 H 0.39 13.37 8.83 -92.71 -0.82 12.55 16 38 H 0.39 15.97 7.04 -92.70 -0.65 15.32 16 Total: -1.00 -70.05 319.87 -1.83 -71.88 By element: Atomic # 1 Polarization: 62.51 SS G_CDS: -1.82 Total: 60.69 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 3.55 Total: -30.24 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -2.14 Total: -115.49 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -3.45 Total: -28.77 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -70.05 -1.83 -71.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127361446.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.754 kcal (2) G-P(sol) polarization free energy of solvation -70.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds