Wall clock time and date at job start Mon Mar 30 2020 05:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46758 * 2 1 4 4 O 1.33493 * 126.82848 * 270.01727 * 3 2 1 5 5 N 1.20663 * 113.15437 * 179.97438 * 4 3 2 6 6 C 1.30011 * 112.30145 * 0.02562 * 5 4 3 7 7 C 1.50703 * 127.32988 * 179.97438 * 6 5 4 8 8 C 1.37356 * 126.83001 * 89.99918 * 3 2 1 9 9 C 1.47403 * 128.56722 * 359.97438 * 8 3 2 10 10 O 1.21610 * 119.99903 * 270.02149 * 9 8 3 11 11 N 1.34767 * 120.00137 * 90.01431 * 9 8 3 12 12 C 1.46502 * 120.00130 * 0.02562 * 11 9 8 13 13 C 1.53001 * 109.47076 * 89.99833 * 12 11 9 14 14 C 1.46503 * 120.00180 * 180.02562 * 11 9 8 15 15 C 1.50703 * 109.47157 * 90.00136 * 14 11 9 16 16 H 1.08000 * 119.99743 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99790 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00163 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99439 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47147 * 90.00698 * 19 17 15 21 21 H 1.48510 * 109.46779 * 210.00281 * 19 17 15 22 22 H 1.48495 * 109.47503 * 330.00011 * 19 17 15 23 23 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47635 * 300.00403 * 1 2 3 25 25 H 1.09007 * 109.47032 * 60.00591 * 1 2 3 26 26 H 1.08999 * 109.47103 * 240.00131 * 2 1 3 27 27 H 1.08994 * 109.46792 * 119.99412 * 2 1 3 28 28 H 1.08996 * 109.46955 * 90.02599 * 7 6 5 29 29 H 1.09004 * 109.46954 * 210.02330 * 7 6 5 30 30 H 1.09001 * 109.47301 * 330.02242 * 7 6 5 31 31 H 1.09000 * 109.47366 * 209.99342 * 12 11 9 32 32 H 1.09000 * 109.47383 * 329.99918 * 12 11 9 33 33 H 1.08998 * 109.47719 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.47085 * 300.00581 * 13 12 11 35 35 H 1.09005 * 109.47391 * 59.99659 * 13 12 11 36 36 H 1.09005 * 109.47130 * 210.00378 * 14 11 9 37 37 H 1.09002 * 109.47119 * 330.00340 * 14 11 9 38 38 H 0.97000 * 119.99783 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2986 2.1754 -1.0685 5 7 2.6890 3.2809 -0.7833 6 6 2.7545 3.4646 0.5021 7 6 3.1953 4.7108 1.2259 8 6 2.3067 2.1972 1.0994 9 6 2.1823 1.8470 2.5258 10 8 1.1380 2.0535 3.1138 11 7 3.2258 1.2978 3.1783 12 6 4.4839 1.0493 2.4701 13 6 5.3868 2.2789 2.5878 14 6 3.1020 0.9492 4.5959 15 6 2.6017 -0.4667 4.7232 16 1 2.3968 -1.0487 3.8368 17 6 2.4065 -1.0192 5.9713 18 7 2.6564 -0.3105 7.0506 19 14 1.7856 -2.7739 6.1290 20 1 2.9410 -3.7060 6.1706 21 1 0.9955 -2.9089 7.3792 22 1 0.9268 -3.1019 4.9629 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.3325 5.3535 1.4012 29 1 3.6442 4.4369 2.1807 30 1 3.9278 5.2434 0.6194 31 1 4.9849 0.1873 2.9108 32 1 4.2760 0.8505 1.4188 33 1 6.3231 2.0940 2.0613 34 1 4.8859 3.1410 2.1473 35 1 5.5948 2.4778 3.6392 36 1 4.0761 1.0351 5.0776 37 1 2.3977 1.6280 5.0768 38 1 2.5187 -0.6992 7.9286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132768804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:58 Heat of formation + Delta-G solvation = 11.384492 kcal Electronic energy + Delta-G solvation = -21149.008447 eV Core-core repulsion = 17994.684003 eV Total energy + Delta-G solvation = -3154.324444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.68056 -39.00903 -35.33453 -34.65346 -34.39315 -32.77778 -30.22907 -30.16912 -28.74898 -27.27246 -24.69043 -23.62821 -23.05646 -22.13439 -19.97590 -18.78031 -17.62415 -16.99280 -16.48436 -15.99721 -15.59943 -14.90590 -14.43122 -14.10935 -13.83587 -13.58995 -13.28907 -13.18073 -12.95677 -12.84662 -12.45183 -12.28563 -12.06145 -11.63687 -11.52343 -11.38331 -11.26665 -10.94612 -10.77017 -10.71875 -10.60558 -10.18643 -9.76559 -9.70022 -9.35513 -9.02402 -8.48000 -7.76986 -6.09232 -4.14314 1.51540 2.10447 2.99628 3.13052 3.26817 3.34035 3.37544 3.86095 4.26468 4.39780 4.42305 4.94767 5.03872 5.20014 5.22524 5.26001 5.33982 5.41692 5.49655 5.54357 5.62222 5.66518 5.74587 5.85520 5.87760 6.03552 6.06563 6.12120 6.20629 6.28170 6.48098 6.99485 7.36525 7.45351 7.86429 8.16590 8.29331 8.37411 8.80893 8.97050 9.50866 10.98970 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.006665 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.060339 B = 4199.787042 C = 4924.819474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C 0.006 3.994 4 O 0.091 5.909 5 N -0.363 5.363 6 C 0.049 3.951 7 C -0.079 4.079 8 C -0.225 4.225 9 C 0.585 3.415 10 O -0.526 6.526 11 N -0.584 5.584 12 C 0.109 3.891 13 C -0.174 4.174 14 C 0.246 3.754 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.045 0.955 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 3.370 -13.323 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.057 4.057 4 O 0.029 5.971 5 N -0.070 5.070 6 C -0.113 4.113 7 C -0.136 4.136 8 C -0.232 4.232 9 C 0.369 3.631 10 O -0.403 6.403 11 N -0.315 5.315 12 C -0.015 4.015 13 C -0.232 4.232 14 C 0.128 3.872 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.725 4.208 -13.828 14.709 hybrid contribution -0.326 -1.236 0.896 1.561 sum 2.399 2.973 -12.932 13.484 Atomic orbital electron populations 1.21774 0.93032 1.02913 1.03037 1.20228 0.97245 0.85826 1.04999 1.24622 0.99698 0.96274 0.85073 1.84466 1.62028 1.17442 1.33156 1.73547 1.17989 0.98831 1.16668 1.24679 1.00693 0.96835 0.89055 1.20287 1.02105 0.91505 0.99713 1.22288 1.10038 0.94682 0.96237 1.16853 0.84265 0.78562 0.83382 1.90797 1.27945 1.54171 1.67377 1.48226 1.10805 1.58934 1.13496 1.21386 0.85462 0.98173 0.96524 1.22326 0.99395 0.98878 1.02628 1.19348 0.98008 0.96330 0.73554 1.21397 1.44925 0.97887 0.92442 0.92395 1.24925 0.95318 0.98159 0.95593 1.69926 1.48629 1.36823 0.97851 0.86506 0.78877 0.84379 0.77728 1.20615 1.21064 1.19829 0.91111 0.91291 0.92344 0.89168 0.87957 0.89781 0.89476 0.90217 0.89722 0.92124 0.92185 0.92641 0.91884 0.94678 0.93716 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.89 37.16 0.37 -1.50 16 2 C -0.04 -0.57 6.38 -27.88 -0.18 -0.75 16 3 C 0.01 0.10 6.50 -34.63 -0.23 -0.13 16 4 O 0.09 1.36 11.06 18.65 0.21 1.57 16 5 N -0.36 -5.71 12.01 34.78 0.42 -5.29 16 6 C 0.05 0.77 7.13 -79.77 -0.57 0.20 16 7 C -0.08 -1.00 9.87 36.01 0.36 -0.65 16 8 C -0.23 -3.93 4.47 -102.89 -0.46 -4.39 16 9 C 0.59 12.40 7.46 -12.53 -0.09 12.31 16 10 O -0.53 -13.40 16.69 5.27 0.09 -13.32 16 11 N -0.58 -12.15 2.46 -176.33 -0.43 -12.58 16 12 C 0.11 1.79 5.95 -4.04 -0.02 1.76 16 13 C -0.17 -2.43 10.24 37.16 0.38 -2.05 16 14 C 0.25 6.23 5.16 -5.19 -0.03 6.21 16 15 C -0.53 -14.43 9.39 -34.44 -0.32 -14.75 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 19 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 1.46 8.11 -51.93 -0.42 1.04 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.13 6.34 -51.93 -0.33 0.80 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 32 H 0.06 0.91 6.65 -51.93 -0.35 0.57 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.75 4.93 -51.93 -0.26 0.50 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -31.96 325.10 -5.50 -37.46 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.50 Total: -1.66 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.89 Total: -2.10 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.72 Total: -43.08 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.29 Total: -11.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.96 -5.50 -37.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132768804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.849 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds