Wall clock time and date at job start Mon Mar 30 2020 05:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46758 * 2 1 4 4 O 1.33493 * 126.82848 * 270.01727 * 3 2 1 5 5 N 1.20663 * 113.15437 * 179.97438 * 4 3 2 6 6 C 1.30011 * 112.30145 * 0.02562 * 5 4 3 7 7 C 1.50703 * 127.32988 * 179.97438 * 6 5 4 8 8 C 1.37356 * 126.83001 * 89.99918 * 3 2 1 9 9 C 1.47403 * 128.56722 * 359.97438 * 8 3 2 10 10 O 1.21610 * 119.99903 * 270.02149 * 9 8 3 11 11 N 1.34767 * 120.00137 * 90.01431 * 9 8 3 12 12 C 1.46502 * 120.00130 * 0.02562 * 11 9 8 13 13 C 1.53001 * 109.47076 * 89.99833 * 12 11 9 14 14 C 1.46503 * 120.00180 * 180.02562 * 11 9 8 15 15 C 1.50703 * 109.47157 * 90.00136 * 14 11 9 16 16 H 1.08000 * 119.99743 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99790 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00163 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99439 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47147 * 90.00698 * 19 17 15 21 21 H 1.48510 * 109.46779 * 210.00281 * 19 17 15 22 22 H 1.48495 * 109.47503 * 330.00011 * 19 17 15 23 23 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47635 * 300.00403 * 1 2 3 25 25 H 1.09007 * 109.47032 * 60.00591 * 1 2 3 26 26 H 1.08999 * 109.47103 * 240.00131 * 2 1 3 27 27 H 1.08994 * 109.46792 * 119.99412 * 2 1 3 28 28 H 1.08996 * 109.46955 * 90.02599 * 7 6 5 29 29 H 1.09004 * 109.46954 * 210.02330 * 7 6 5 30 30 H 1.09001 * 109.47301 * 330.02242 * 7 6 5 31 31 H 1.09000 * 109.47366 * 209.99342 * 12 11 9 32 32 H 1.09000 * 109.47383 * 329.99918 * 12 11 9 33 33 H 1.08998 * 109.47719 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.47085 * 300.00581 * 13 12 11 35 35 H 1.09005 * 109.47391 * 59.99659 * 13 12 11 36 36 H 1.09005 * 109.47130 * 210.00378 * 14 11 9 37 37 H 1.09002 * 109.47119 * 330.00340 * 14 11 9 38 38 H 0.97000 * 119.99783 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2986 2.1754 -1.0685 5 7 2.6890 3.2809 -0.7833 6 6 2.7545 3.4646 0.5021 7 6 3.1953 4.7108 1.2259 8 6 2.3067 2.1972 1.0994 9 6 2.1823 1.8470 2.5258 10 8 1.1380 2.0535 3.1138 11 7 3.2258 1.2978 3.1783 12 6 4.4839 1.0493 2.4701 13 6 5.3868 2.2789 2.5878 14 6 3.1020 0.9492 4.5959 15 6 2.6017 -0.4667 4.7232 16 1 2.3968 -1.0487 3.8368 17 6 2.4065 -1.0192 5.9713 18 7 2.6564 -0.3105 7.0506 19 14 1.7856 -2.7739 6.1290 20 1 2.9410 -3.7060 6.1706 21 1 0.9955 -2.9089 7.3792 22 1 0.9268 -3.1019 4.9629 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.3325 5.3535 1.4012 29 1 3.6442 4.4369 2.1807 30 1 3.9278 5.2434 0.6194 31 1 4.9849 0.1873 2.9108 32 1 4.2760 0.8505 1.4188 33 1 6.3231 2.0940 2.0613 34 1 4.8859 3.1410 2.1473 35 1 5.5948 2.4778 3.6392 36 1 4.0761 1.0351 5.0776 37 1 2.3977 1.6280 5.0768 38 1 2.5187 -0.6992 7.9286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132768804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:58 Heat of formation + Delta-G solvation = -7.960109 kcal Electronic energy + Delta-G solvation = -21149.847291 eV Core-core repulsion = 17994.684003 eV Total energy + Delta-G solvation = -3155.163288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.92145 -40.70016 -37.04414 -35.85117 -35.61423 -34.78551 -31.72769 -31.42187 -29.93686 -29.07117 -26.26571 -24.91533 -24.53119 -23.66163 -21.24818 -20.24425 -18.92118 -18.60247 -18.36479 -17.47334 -17.24977 -16.33075 -16.20547 -15.38966 -15.22465 -14.87653 -14.63133 -14.36182 -14.28304 -14.10801 -13.93317 -13.66856 -13.46024 -13.29041 -13.08887 -12.70078 -12.58774 -12.51380 -12.47571 -12.16213 -11.96089 -11.85860 -11.72635 -11.11738 -10.87823 -10.63339 -10.38336 -9.56253 -8.21884 -6.36179 0.26923 0.84345 1.38494 1.41600 1.46573 1.52425 1.77149 2.28660 2.43592 3.05099 3.09384 3.22704 3.62115 3.90222 4.03669 4.10023 4.20042 4.27011 4.35724 4.43854 4.51911 4.53199 4.66117 4.76324 4.86667 4.89431 4.91588 5.00583 5.02003 5.04849 5.21524 5.25794 5.34178 5.54787 5.79657 6.04629 6.59442 6.72109 7.14893 7.19290 7.37234 8.85823 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.006665 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.060339 B = 4199.787042 C = 4924.819474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.028 3.972 4 O 0.099 5.901 5 N -0.367 5.367 6 C 0.054 3.946 7 C -0.081 4.081 8 C -0.258 4.258 9 C 0.589 3.411 10 O -0.582 6.582 11 N -0.584 5.584 12 C 0.104 3.896 13 C -0.168 4.168 14 C 0.262 3.738 15 C -0.542 4.542 16 H 0.058 0.942 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.966 3.034 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.269 1.269 23 H 0.091 0.909 24 H 0.030 0.970 25 H 0.075 0.925 26 H 0.132 0.868 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.029 0.971 37 H 0.001 0.999 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 2.325 -15.569 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.035 4.035 4 O 0.039 5.961 5 N -0.075 5.075 6 C -0.108 4.108 7 C -0.138 4.138 8 C -0.265 4.265 9 C 0.376 3.624 10 O -0.463 6.463 11 N -0.313 5.313 12 C -0.018 4.018 13 C -0.225 4.225 14 C 0.142 3.858 15 C -0.581 4.581 16 H 0.076 0.924 17 C -0.189 4.189 18 N -0.568 5.568 19 Si 0.790 3.210 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.193 1.193 23 H 0.110 0.890 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.150 0.850 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.019 0.981 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.544 3.162 -16.117 16.802 hybrid contribution -0.558 -0.880 1.561 1.877 sum 2.986 2.282 -14.555 15.033 Atomic orbital electron populations 1.21760 0.92717 1.04004 1.01976 1.20410 0.97381 0.84480 1.06197 1.24984 0.97396 0.96798 0.84360 1.84476 1.61720 1.17264 1.32635 1.73542 1.18521 0.99096 1.16359 1.25008 0.99922 0.96919 0.88962 1.20423 1.03038 0.90703 0.99633 1.21907 1.13454 0.96697 0.94432 1.17223 0.83185 0.77314 0.84687 1.90755 1.30037 1.56393 1.69072 1.48185 1.12590 1.58489 1.12077 1.21649 0.83814 0.99462 0.96878 1.22272 1.00214 0.97663 1.02393 1.18830 0.96164 0.94728 0.76096 1.21677 1.45072 0.98646 0.92683 0.92391 1.25832 0.95314 1.02606 0.95185 1.70048 1.49515 1.38801 0.98409 0.85437 0.78718 0.79204 0.77633 1.18874 1.20919 1.19315 0.89015 0.95035 0.90638 0.84996 0.89618 0.89141 0.90044 0.87534 0.89936 0.90241 0.88942 0.92240 0.93124 0.95347 0.98117 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.89 71.98 0.71 -2.73 16 2 C -0.05 -1.10 6.38 29.85 0.19 -0.91 16 3 C 0.03 0.81 6.50 25.48 0.17 0.97 16 4 O 0.10 2.73 11.06 76.98 0.85 3.58 16 5 N -0.37 -10.70 12.01 -44.78 -0.54 -11.24 16 6 C 0.05 1.61 7.13 45.16 0.32 1.93 16 7 C -0.08 -1.94 9.87 71.24 0.70 -1.23 16 8 C -0.26 -8.86 4.47 -18.75 -0.08 -8.95 16 9 C 0.59 25.69 7.46 86.66 0.65 26.34 16 10 O -0.58 -31.23 16.69 -4.06 -0.07 -31.30 16 11 N -0.58 -24.90 2.46 -830.05 -2.04 -26.94 16 12 C 0.10 3.35 5.95 86.38 0.51 3.86 16 13 C -0.17 -4.43 10.24 71.98 0.74 -3.69 16 14 C 0.26 13.89 5.16 85.63 0.44 14.33 16 15 C -0.54 -30.35 9.39 25.60 0.24 -30.11 16 16 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 17 C 0.01 0.55 5.46 84.66 0.46 1.01 16 18 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 19 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.09 2.35 8.11 -2.39 -0.02 2.33 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.05 6.34 -2.38 -0.02 2.03 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 32 H 0.08 2.26 6.65 -2.39 -0.02 2.24 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.53 4.93 -2.39 -0.01 1.52 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.03 1.52 8.07 -2.38 -0.02 1.50 16 37 H 0.00 0.04 7.42 -2.39 -0.02 0.03 16 38 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -71.46 325.10 6.62 -64.84 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.05 Total: 9.43 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 5.05 Total: 0.84 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -2.29 Total: -93.03 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: 0.78 Total: -27.72 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -71.46 6.62 -64.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132768804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.876 kcal (2) G-P(sol) polarization free energy of solvation -71.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds