Wall clock time and date at job start Mon Mar 30 2020 04:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47060 * 240.00291 * 3 2 1 5 5 H 1.48503 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46852 * 120.00283 * 3 2 1 7 7 C 1.38809 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99682 * 196.88391 * 7 2 1 9 9 N 1.36936 * 119.99955 * 17.16531 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57103 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.52998 * 109.47355 * 294.30335 * 13 12 11 15 15 C 1.53001 * 109.47037 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47345 * 180.02562 * 15 14 13 17 17 F 1.39901 * 109.47041 * 59.99551 * 16 15 14 18 18 F 1.39895 * 109.47414 * 179.97438 * 16 15 14 19 19 F 1.39904 * 109.46910 * 299.99961 * 16 15 14 20 20 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 21 21 C 1.47086 * 120.87786 * 206.85385 * 9 7 2 22 22 H 0.97001 * 119.99713 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 24 24 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 25 25 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 26 26 H 1.08999 * 109.42005 * 173.94504 * 11 10 9 27 27 H 1.08998 * 109.46930 * 54.30855 * 13 12 11 28 28 H 1.09005 * 109.46997 * 174.30484 * 13 12 11 29 29 H 1.08998 * 109.46978 * 299.99622 * 14 13 12 30 30 H 1.08995 * 109.47116 * 60.00155 * 14 13 12 31 31 H 1.09010 * 109.46692 * 299.99798 * 15 14 13 32 32 H 1.08995 * 109.47385 * 59.99899 * 15 14 13 33 33 H 1.09002 * 109.49046 * 303.14169 * 20 12 11 34 34 H 1.08998 * 109.52013 * 183.07630 * 20 12 11 35 35 H 1.08998 * 109.62919 * 350.89226 * 21 9 7 36 36 H 1.09001 * 109.62891 * 111.47641 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3615 -0.3511 10 6 0.2074 -2.3399 -1.2501 11 6 0.4529 -3.3518 -2.3805 12 7 0.7625 -4.6641 -1.7975 13 6 0.8316 -5.6992 -2.8376 14 6 -0.5522 -5.8874 -3.4626 15 6 -0.4802 -6.9660 -4.5454 16 6 -1.8638 -7.1539 -5.1709 17 9 -2.2855 -5.9479 -5.7411 18 9 -1.7979 -8.1396 -6.1614 19 9 -2.7731 -7.5454 -4.1824 20 6 2.0049 -4.6199 -1.0152 21 6 1.8269 -3.6607 0.1665 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6890 -2.6166 -0.6951 24 1 0.0877 -1.3413 -1.6702 25 1 1.2903 -3.0197 -2.9942 26 1 -0.4422 -3.4300 -2.9976 27 1 1.5397 -5.3935 -3.6078 28 1 1.1607 -6.6388 -2.3938 29 1 -1.2602 -6.1932 -2.6923 30 1 -0.8813 -4.9479 -3.9064 31 1 0.2280 -6.6606 -5.3158 32 1 -0.1513 -7.9054 -4.1013 33 1 2.8208 -4.2702 -1.6478 34 1 2.2361 -5.6176 -0.6421 35 1 2.7785 -3.5357 0.6832 36 1 1.0831 -4.0619 0.8549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133790243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:20 Heat of formation + Delta-G solvation = -135.364998 kcal Electronic energy + Delta-G solvation = -20742.646429 eV Core-core repulsion = 17040.101710 eV Total energy + Delta-G solvation = -3702.544719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.21328 -47.73190 -47.67061 -38.31399 -35.42554 -33.46957 -31.19615 -29.90458 -28.30447 -25.85805 -23.59843 -22.79335 -22.27545 -20.98253 -19.11686 -18.66483 -18.40658 -17.53115 -16.71962 -15.52658 -15.11394 -14.64610 -14.54788 -14.43857 -14.17016 -14.08810 -13.87992 -13.82987 -13.75755 -13.44758 -13.10940 -12.99674 -12.41816 -12.11399 -11.93493 -11.46746 -11.32018 -11.01490 -10.87313 -10.71639 -10.43113 -10.29012 -10.04191 -9.73301 -9.58706 -8.49805 -7.84993 -6.66074 -5.77563 -3.19017 2.64520 3.38639 3.44534 3.45515 3.65384 3.84953 3.91704 4.37895 4.50990 4.77216 4.96733 5.09005 5.25607 5.35592 5.41787 5.45505 5.63210 5.85906 5.92624 6.00349 6.13374 6.14216 6.23854 6.33984 6.54834 6.68686 6.93114 7.24849 7.58741 7.64748 7.70219 7.81923 8.44235 9.21795 9.85226 10.43969 11.31170 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.003887 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.804814 B = 7200.845271 C = 7603.500826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.178 3.822 11 C 0.031 3.969 12 N -0.533 5.533 13 C 0.059 3.941 14 C -0.123 4.123 15 C -0.163 4.163 16 C 0.452 3.548 17 F -0.183 7.183 18 F -0.190 7.190 19 F -0.183 7.183 20 C 0.045 3.955 21 C 0.148 3.852 22 H 0.254 0.746 23 H 0.027 0.973 24 H 0.088 0.912 25 H 0.025 0.975 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 -14.775 -9.842 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.098 4.098 12 N -0.258 5.258 13 C -0.069 4.069 14 C -0.161 4.161 15 C -0.202 4.202 16 C 0.398 3.602 17 F -0.165 7.165 18 F -0.171 7.171 19 F -0.164 7.164 20 C -0.084 4.084 21 C 0.021 3.979 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.106 0.894 25 H 0.043 0.957 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.408 -14.726 -9.508 17.585 hybrid contribution 0.823 0.984 -0.736 1.480 sum -0.584 -13.741 -10.245 17.150 Atomic orbital electron populations 1.70022 1.05210 1.25606 1.53928 1.25023 0.95296 0.98337 1.00975 0.86367 0.78904 0.83406 0.78080 1.21120 1.21587 1.20896 1.19154 0.92559 0.84883 1.41773 0.91717 1.44139 1.34431 1.01265 1.52074 1.20958 0.88961 0.96558 0.88326 1.23051 0.98729 0.89328 0.98651 1.61932 1.34798 1.05873 1.23224 1.21980 0.94755 0.96438 0.93777 1.21634 0.99789 0.97787 0.96867 1.22864 0.91429 1.04384 1.01549 1.20655 0.89581 0.73555 0.76451 1.93194 1.91829 1.45778 1.85666 1.93173 1.96754 1.63332 1.63861 1.93192 1.70553 1.90999 1.61698 1.22610 0.89540 0.99404 0.96851 1.20981 0.97791 0.86520 0.92570 0.93548 0.95501 0.89390 0.95679 0.91908 0.95311 0.91154 0.89644 0.90284 0.87523 0.87345 0.95460 0.92044 0.92620 0.95656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 11.16 55.49 0.62 -25.70 16 2 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 3 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -7.03 9.63 -15.06 -0.15 -7.17 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.60 -15.17 3.03 -171.73 -0.52 -15.69 16 10 C 0.18 4.31 5.45 -3.36 -0.02 4.29 16 11 C 0.03 0.61 5.48 -3.47 -0.02 0.59 16 12 N -0.53 -9.19 4.63 -234.04 -1.08 -10.28 16 13 C 0.06 0.76 4.96 -3.83 -0.02 0.74 16 14 C -0.12 -1.39 4.90 -26.73 -0.13 -1.52 16 15 C -0.16 -1.39 5.26 -26.73 -0.14 -1.53 16 16 C 0.45 4.62 3.16 37.16 0.12 4.74 16 17 F -0.18 -2.15 16.80 2.25 0.04 -2.11 16 18 F -0.19 -1.96 17.32 2.25 0.04 -1.93 16 19 F -0.18 -2.10 16.80 2.25 0.04 -2.06 16 20 C 0.05 0.80 5.62 -3.71 -0.02 0.78 16 21 C 0.15 3.15 6.69 -3.60 -0.02 3.12 16 22 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 1.09 6.16 -51.93 -0.32 0.77 16 27 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 28 H 0.07 0.79 7.97 -51.93 -0.41 0.38 16 29 H 0.08 1.04 7.80 -51.93 -0.41 0.63 16 30 H 0.08 0.98 6.06 -51.93 -0.31 0.67 16 31 H 0.11 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 35 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 299.94 15.07 4.52 4.52 Total: -1.00 -29.85 299.94 -6.97 -36.83 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -5.11 Total: -4.24 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.49 Total: 4.01 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.98 Total: -51.67 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.11 Total: -6.10 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.85 -6.97 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133790243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.540 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds