Wall clock time and date at job start Mon Mar 30 2020 04:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47060 * 240.00291 * 3 2 1 5 5 H 1.48503 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46852 * 120.00283 * 3 2 1 7 7 C 1.38809 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99682 * 196.88391 * 7 2 1 9 9 N 1.36936 * 119.99955 * 17.16531 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57103 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.52998 * 109.47355 * 294.30335 * 13 12 11 15 15 C 1.53001 * 109.47037 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47345 * 180.02562 * 15 14 13 17 17 F 1.39901 * 109.47041 * 59.99551 * 16 15 14 18 18 F 1.39895 * 109.47414 * 179.97438 * 16 15 14 19 19 F 1.39904 * 109.46910 * 299.99961 * 16 15 14 20 20 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 21 21 C 1.47086 * 120.87786 * 206.85385 * 9 7 2 22 22 H 0.97001 * 119.99713 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 24 24 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 25 25 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 26 26 H 1.08999 * 109.42005 * 173.94504 * 11 10 9 27 27 H 1.08998 * 109.46930 * 54.30855 * 13 12 11 28 28 H 1.09005 * 109.46997 * 174.30484 * 13 12 11 29 29 H 1.08998 * 109.46978 * 299.99622 * 14 13 12 30 30 H 1.08995 * 109.47116 * 60.00155 * 14 13 12 31 31 H 1.09010 * 109.46692 * 299.99798 * 15 14 13 32 32 H 1.08995 * 109.47385 * 59.99899 * 15 14 13 33 33 H 1.09002 * 109.49046 * 303.14169 * 20 12 11 34 34 H 1.08998 * 109.52013 * 183.07630 * 20 12 11 35 35 H 1.08998 * 109.62919 * 350.89226 * 21 9 7 36 36 H 1.09001 * 109.62891 * 111.47641 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3615 -0.3511 10 6 0.2074 -2.3399 -1.2501 11 6 0.4529 -3.3518 -2.3805 12 7 0.7625 -4.6641 -1.7975 13 6 0.8316 -5.6992 -2.8376 14 6 -0.5522 -5.8874 -3.4626 15 6 -0.4802 -6.9660 -4.5454 16 6 -1.8638 -7.1539 -5.1709 17 9 -2.2855 -5.9479 -5.7411 18 9 -1.7979 -8.1396 -6.1614 19 9 -2.7731 -7.5454 -4.1824 20 6 2.0049 -4.6199 -1.0152 21 6 1.8269 -3.6607 0.1665 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6890 -2.6166 -0.6951 24 1 0.0877 -1.3413 -1.6702 25 1 1.2903 -3.0197 -2.9942 26 1 -0.4422 -3.4300 -2.9976 27 1 1.5397 -5.3935 -3.6078 28 1 1.1607 -6.6388 -2.3938 29 1 -1.2602 -6.1932 -2.6923 30 1 -0.8813 -4.9479 -3.9064 31 1 0.2280 -6.6606 -5.3158 32 1 -0.1513 -7.9054 -4.1013 33 1 2.8208 -4.2702 -1.6478 34 1 2.2361 -5.6176 -0.6421 35 1 2.7785 -3.5357 0.6832 36 1 1.0831 -4.0619 0.8549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133790243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:19 Heat of formation + Delta-G solvation = -154.045005 kcal Electronic energy + Delta-G solvation = -20743.456455 eV Core-core repulsion = 17040.101710 eV Total energy + Delta-G solvation = -3703.354745 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.03641 -48.54637 -48.52524 -39.77942 -36.85197 -34.85573 -32.97903 -31.60005 -29.59710 -27.41371 -25.09280 -24.31800 -23.56830 -22.03921 -20.82048 -19.48751 -19.23720 -18.77835 -18.24607 -16.96738 -16.41429 -16.15480 -15.69020 -15.48188 -15.34089 -15.23472 -15.16179 -14.95602 -14.88785 -14.69831 -14.68063 -14.40380 -13.48015 -13.22622 -13.19846 -12.89948 -12.76646 -12.58551 -12.48179 -12.21516 -12.06719 -11.91889 -11.74325 -11.48441 -11.26067 -10.57826 -9.23809 -8.67584 -7.87549 -5.32688 1.46757 1.49049 1.56193 1.87401 2.51016 2.81168 3.01149 3.16175 3.23595 3.29022 3.69638 3.96342 4.09331 4.18374 4.36315 4.38583 4.46822 4.59116 4.63629 4.64113 4.69864 4.80051 4.89911 5.03315 5.12501 5.19856 5.28342 5.38395 5.60937 5.68513 6.20216 6.32722 6.37799 7.13250 7.84398 8.38608 9.18970 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.003887 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.804814 B = 7200.845271 C = 7603.500826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.268 4.268 8 H 0.068 0.932 9 N -0.615 5.615 10 C 0.184 3.816 11 C 0.050 3.950 12 N -0.547 5.547 13 C 0.061 3.939 14 C -0.119 4.119 15 C -0.151 4.151 16 C 0.449 3.551 17 F -0.195 7.195 18 F -0.190 7.190 19 F -0.193 7.193 20 C 0.057 3.943 21 C 0.141 3.859 22 H 0.250 0.750 23 H -0.003 1.003 24 H 0.054 0.946 25 H 0.019 0.981 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.024 0.976 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -16.392 -10.751 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.398 4.398 8 H 0.086 0.914 9 N -0.340 5.340 10 C 0.058 3.942 11 C -0.079 4.079 12 N -0.271 5.271 13 C -0.066 4.066 14 C -0.157 4.157 15 C -0.190 4.190 16 C 0.395 3.605 17 F -0.177 7.177 18 F -0.171 7.171 19 F -0.174 7.174 20 C -0.072 4.072 21 C 0.016 3.984 22 H 0.059 0.941 23 H 0.015 0.985 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.043 0.957 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 0.028 -16.384 -10.423 19.418 hybrid contribution 0.353 1.414 -0.417 1.516 sum 0.382 -14.970 -10.841 18.487 Atomic orbital electron populations 1.70192 1.06722 1.25954 1.55368 1.25807 0.96048 1.01538 1.01203 0.85319 0.77547 0.79097 0.78352 1.20408 1.21969 1.20028 1.19524 0.92944 0.86121 1.41185 0.91425 1.44435 1.34487 1.02257 1.52785 1.20716 0.87795 0.96390 0.89293 1.22673 0.99353 0.89477 0.96430 1.61853 1.34869 1.05462 1.24959 1.22077 0.95767 0.95777 0.92991 1.21531 0.98726 0.98130 0.97331 1.22835 0.90461 1.04592 1.01095 1.20963 0.90163 0.73071 0.76284 1.93174 1.92073 1.46552 1.85895 1.93172 1.96753 1.63279 1.63907 1.93175 1.71136 1.91055 1.62051 1.22450 0.89505 1.00040 0.95253 1.21165 0.97405 0.85593 0.94271 0.94067 0.98536 0.92722 0.96238 0.90180 0.94270 0.88506 0.90655 0.91816 0.85605 0.84777 0.95733 0.88327 0.92132 0.96748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.34 11.16 21.65 0.24 -56.10 16 2 C -0.05 -2.87 4.93 84.86 0.42 -2.45 16 3 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.27 -14.99 9.63 84.03 0.81 -14.18 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 9 N -0.62 -31.79 3.03 -697.25 -2.11 -33.91 16 10 C 0.18 9.19 5.45 86.50 0.47 9.66 16 11 C 0.05 1.90 5.48 86.54 0.47 2.38 16 12 N -0.55 -17.68 4.63 -894.35 -4.14 -21.82 16 13 C 0.06 1.35 4.96 86.30 0.43 1.77 16 14 C -0.12 -2.38 4.90 30.59 0.15 -2.23 16 15 C -0.15 -2.05 5.26 30.59 0.16 -1.88 16 16 C 0.45 8.26 3.16 71.98 0.23 8.49 16 17 F -0.20 -4.35 16.80 44.97 0.76 -3.59 16 18 F -0.19 -3.52 17.32 44.97 0.78 -2.74 16 19 F -0.19 -4.13 16.80 44.97 0.76 -3.38 16 20 C 0.06 1.85 5.62 86.38 0.49 2.33 16 21 C 0.14 5.92 6.69 86.35 0.58 6.50 16 22 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 23 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 24 H 0.05 3.06 6.12 -2.39 -0.01 3.04 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 2.74 6.16 -2.39 -0.01 2.73 16 27 H 0.04 0.82 8.12 -2.39 -0.02 0.80 16 28 H 0.10 1.68 7.97 -2.38 -0.02 1.66 16 29 H 0.07 1.68 7.80 -2.39 -0.02 1.66 16 30 H 0.06 1.47 6.06 -2.39 -0.01 1.46 16 31 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 2.52 7.99 -2.39 -0.02 2.50 16 35 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 36 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -65.95 299.94 3.58 -62.37 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 1.07 Total: 1.61 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 4.20 Total: 10.38 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -6.01 Total: -111.83 kcal Atomic # 9 Polarization: -11.99 SS G_CDS: 2.29 Total: -9.70 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.95 3.58 -62.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133790243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.677 kcal (2) G-P(sol) polarization free energy of solvation -65.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds