Wall clock time and date at job start Mon Mar 30 2020 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47283 * 2 1 4 4 H 1.08999 * 109.46727 * 305.29318 * 3 2 1 5 5 C 1.50697 * 109.47087 * 65.29092 * 3 2 1 6 6 H 1.08008 * 119.99968 * 32.10131 * 5 3 2 7 7 C 1.37871 * 120.00517 * 211.82388 * 5 3 2 8 8 N 1.31516 * 119.99610 * 354.57156 * 7 5 3 9 9 Si 1.86795 * 120.00639 * 174.57614 * 7 5 3 10 10 H 1.48500 * 109.46960 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47357 * 119.99383 * 9 7 5 12 12 H 1.48498 * 109.47425 * 239.99933 * 9 7 5 13 13 C 1.50700 * 109.47260 * 185.29464 * 3 2 1 14 14 O 1.21392 * 119.99546 * 268.33697 * 13 3 2 15 15 C 1.41766 * 119.99852 * 88.33522 * 13 3 2 16 16 C 1.41750 * 126.56697 * 264.49511 * 15 13 3 17 17 C 1.50707 * 125.94354 * 0.02562 * 16 15 13 18 18 N 1.30213 * 108.10990 * 179.97438 * 16 15 13 19 19 N 1.39874 * 109.28450 * 359.97438 * 18 16 15 20 20 C 1.46498 * 125.69344 * 180.02562 * 19 18 16 21 21 C 1.34579 * 108.61528 * 359.74913 * 19 18 16 22 22 O 1.35256 * 126.44358 * 180.24536 * 21 19 18 23 23 C 1.42899 * 116.99922 * 269.61251 * 22 21 19 24 24 H 1.08993 * 109.47394 * 303.63721 * 1 2 3 25 25 H 1.09000 * 109.47234 * 63.64406 * 1 2 3 26 26 H 1.09006 * 109.47200 * 183.64093 * 1 2 3 27 27 H 1.09007 * 109.47061 * 239.99804 * 2 1 3 28 28 H 1.08998 * 109.47284 * 120.00035 * 2 1 3 29 29 H 0.97002 * 120.00316 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46493 * 94.81836 * 17 16 15 31 31 H 1.09000 * 109.47181 * 214.81938 * 17 16 15 32 32 H 1.09003 * 109.47246 * 334.82433 * 17 16 15 33 33 H 1.09005 * 109.47245 * 95.03986 * 20 19 18 34 34 H 1.08998 * 109.47291 * 215.04045 * 20 19 18 35 35 H 1.09003 * 109.47027 * 335.04265 * 20 19 18 36 36 H 1.09006 * 109.46899 * 304.81245 * 23 22 21 37 37 H 1.08997 * 109.47380 * 64.80836 * 23 22 21 38 38 H 1.08998 * 109.46947 * 184.81344 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6013 1.9829 -0.8388 5 6 1.6475 2.1140 1.2907 6 1 1.5795 1.5366 2.2010 7 6 1.3808 3.4666 1.3109 8 7 1.5718 4.1906 0.2297 9 14 0.7485 4.2708 2.8737 10 1 0.6194 3.2459 3.9405 11 1 1.7019 5.3225 3.3100 12 1 -0.5790 4.8833 2.6132 13 6 3.5413 1.4445 -0.1311 14 8 4.2373 1.4435 0.8634 15 6 4.1406 1.4475 -1.4159 16 6 4.5979 0.3162 -2.1371 17 6 4.5326 -1.1156 -1.6712 18 7 5.0832 0.7291 -3.2726 19 7 4.9676 2.1211 -3.3455 20 6 5.4007 2.9572 -4.4679 21 6 4.3866 2.5637 -2.2152 22 8 4.0989 3.8496 -1.9100 23 6 5.1040 4.5924 -1.2172 24 1 -0.3634 0.5692 0.8555 25 1 -0.3634 0.4562 -0.9208 26 1 -0.3634 -1.0256 0.0653 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3838 5.1421 0.2436 30 1 3.6304 -1.5846 -2.0639 31 1 5.4087 -1.6551 -2.0309 32 1 4.5113 -1.1426 -0.5817 33 1 4.5562 3.1389 -5.1327 34 1 5.7762 3.9078 -4.0892 35 1 6.1920 2.4468 -5.0170 36 1 5.3845 4.0627 -0.3067 37 1 5.9794 4.7037 -1.8570 38 1 4.7149 5.5774 -0.9592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158547022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:53 Heat of formation + Delta-G solvation = -23.831896 kcal Electronic energy + Delta-G solvation = -21394.796321 eV Core-core repulsion = 18238.944780 eV Total energy + Delta-G solvation = -3155.851541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.53866 -39.77727 -39.10689 -36.02343 -34.89645 -33.72184 -31.42327 -30.38692 -29.19548 -28.27211 -26.88998 -25.83667 -23.46106 -22.08844 -21.23120 -20.20616 -18.50114 -18.47647 -17.42814 -16.96526 -16.73190 -16.51273 -15.77802 -15.55069 -15.18221 -14.99253 -14.65384 -14.34171 -14.30825 -13.87186 -13.66952 -13.37493 -13.23197 -13.04579 -12.84889 -12.82389 -12.69694 -12.54416 -12.23116 -12.20255 -11.86208 -11.14550 -11.12842 -10.95631 -10.72001 -10.14864 -10.04987 -9.39179 -8.05259 -6.12605 0.41495 1.22349 1.30230 1.41028 1.41962 1.48618 1.53223 2.46435 2.63540 3.20284 3.42930 3.93279 4.09369 4.11237 4.25856 4.30815 4.35504 4.46173 4.49826 4.57887 4.63449 4.69999 4.74319 4.77987 4.88365 4.93680 5.13879 5.18512 5.22748 5.35203 5.48647 5.59064 5.63111 5.73890 5.82868 6.30086 6.42231 6.56328 6.93212 7.13011 7.50107 9.01025 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.008385 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.708691 B = 3338.679003 C = 4270.604910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.098 4.098 3 C 0.001 3.999 4 H 0.045 0.955 5 C -0.509 4.509 6 H 0.045 0.955 7 C 0.020 3.980 8 N -0.896 5.896 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.458 3.542 14 O -0.508 6.508 15 C -0.338 4.338 16 C 0.110 3.890 17 C -0.074 4.074 18 N -0.291 5.291 19 N -0.369 5.369 20 C 0.089 3.911 21 C 0.282 3.718 22 O -0.301 6.301 23 C 0.044 3.956 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.260 0.740 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.156 -3.296 -9.369 11.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.136 4.136 3 C -0.018 4.018 4 H 0.063 0.937 5 C -0.547 4.547 6 H 0.063 0.937 7 C -0.181 4.181 8 N -0.533 5.533 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.337 3.663 14 O -0.385 6.385 15 C -0.352 4.352 16 C -0.056 4.056 17 C -0.132 4.132 18 N -0.117 5.117 19 N -0.159 5.159 20 C -0.050 4.050 21 C 0.110 3.890 22 O -0.210 6.210 23 C -0.051 4.051 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.044 0.956 37 H 0.095 0.905 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.897 -3.163 -10.121 12.649 hybrid contribution -0.551 1.396 1.625 2.212 sum 6.345 -1.767 -8.496 10.750 Atomic orbital electron populations 1.21544 0.94791 1.00952 1.01246 1.21345 0.97217 0.94918 1.00090 1.19333 0.89254 0.94981 0.98245 0.93689 1.21019 1.45767 0.93628 0.94243 0.93658 1.25653 0.95688 0.97980 0.98769 1.70125 1.48097 1.06472 1.28628 0.85728 0.78066 0.78374 0.80838 1.19623 1.21272 1.20049 1.21482 0.93433 0.66291 0.85121 1.90324 1.67314 1.38497 1.42380 1.20289 1.18640 0.94486 1.01744 1.22577 0.95368 0.96972 0.90654 1.20403 1.05203 0.86224 1.01411 1.76825 1.26252 0.87979 1.20658 1.49037 1.45878 1.05674 1.15310 1.22272 1.02641 0.93756 0.86300 1.19460 0.96165 0.85694 0.87645 1.86099 1.41177 1.18212 1.75473 1.23152 0.90825 0.95985 0.95109 0.93588 0.93949 0.91302 0.92173 0.93474 0.93139 0.88040 0.88068 0.91242 0.89279 0.88380 0.86676 0.95577 0.90530 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 9.79 71.98 0.70 -4.14 16 2 C -0.10 -4.10 5.37 30.59 0.16 -3.94 16 3 C 0.00 0.07 2.03 -12.29 -0.02 0.04 16 4 H 0.04 2.57 7.45 -2.39 -0.02 2.55 16 5 C -0.51 -28.83 6.66 25.60 0.17 -28.66 16 6 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 7 C 0.02 1.11 5.45 84.65 0.46 1.58 16 8 N -0.90 -51.26 12.90 21.45 0.28 -50.98 16 9 Si 0.94 44.87 29.54 68.60 2.03 46.90 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 C 0.46 23.40 5.40 26.56 0.14 23.55 16 14 O -0.51 -28.78 17.06 -3.38 -0.06 -28.84 16 15 C -0.34 -15.12 5.56 -21.24 -0.12 -15.24 16 16 C 0.11 4.07 7.27 43.67 0.32 4.38 16 17 C -0.07 -2.09 9.95 71.24 0.71 -1.38 16 18 N -0.29 -10.16 12.46 -46.49 -0.58 -10.74 16 19 N -0.37 -12.41 3.99 -479.60 -1.91 -14.32 16 20 C 0.09 1.90 11.37 127.77 1.45 3.35 16 21 C 0.28 11.67 7.03 84.57 0.59 12.26 16 22 O -0.30 -12.61 10.44 -85.40 -0.89 -13.51 16 23 C 0.04 1.51 11.13 113.37 1.26 2.77 16 24 H 0.04 1.91 7.28 -2.39 -0.02 1.90 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.06 2.20 7.63 -2.38 -0.02 2.18 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.10 2.43 7.99 -2.39 -0.02 2.41 16 31 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 2.11 7.88 -2.39 -0.02 2.09 16 33 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.10 1.75 8.06 -2.39 -0.02 1.73 16 35 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.08 1.95 8.06 -2.39 -0.02 1.93 16 38 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -72.78 330.33 5.74 -67.04 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.04 Total: 9.89 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.84 Total: -5.43 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -2.21 Total: -76.04 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -0.95 Total: -42.35 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -72.78 5.74 -67.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158547022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.203 kcal (2) G-P(sol) polarization free energy of solvation -72.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds