Wall clock time and date at job start Mon Mar 30 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 H 1.09000 * 109.47065 * 305.47041 * 3 2 1 5 5 C 1.50706 * 109.47221 * 185.47252 * 3 2 1 6 6 H 1.07999 * 119.99757 * 239.99845 * 5 3 2 7 7 C 1.37871 * 120.00098 * 59.99856 * 5 3 2 8 8 N 1.31519 * 119.99873 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99941 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47055 * 60.00224 * 9 7 5 11 11 H 1.48503 * 109.46742 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47162 * 299.99537 * 9 7 5 13 13 C 1.50698 * 109.47363 * 65.47058 * 3 2 1 14 14 O 1.21395 * 120.00087 * 87.31527 * 13 3 2 15 15 C 1.41768 * 120.00082 * 267.32221 * 13 3 2 16 16 C 1.41753 * 126.56173 * 176.89784 * 15 13 3 17 17 C 1.50704 * 125.95062 * 359.96410 * 16 15 13 18 18 N 1.30217 * 108.11047 * 179.97438 * 16 15 13 19 19 N 1.39884 * 109.28148 * 359.97438 * 18 16 15 20 20 C 1.46491 * 125.69282 * 180.02562 * 19 18 16 21 21 C 1.34588 * 108.60935 * 359.72616 * 19 18 16 22 22 O 1.35255 * 126.43630 * 180.26794 * 21 19 18 23 23 C 1.42901 * 116.99856 * 83.36670 * 22 21 19 24 24 H 1.09005 * 109.46937 * 174.48473 * 1 2 3 25 25 H 1.09001 * 109.46926 * 294.47979 * 1 2 3 26 26 H 1.08992 * 109.47086 * 54.48674 * 1 2 3 27 27 H 1.09008 * 109.47343 * 119.99883 * 2 1 3 28 28 H 1.08995 * 109.47554 * 240.00073 * 2 1 3 29 29 H 0.96996 * 120.00025 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47355 * 91.82389 * 17 16 15 31 31 H 1.08995 * 109.47275 * 211.82766 * 17 16 15 32 32 H 1.08999 * 109.46812 * 331.82452 * 17 16 15 33 33 H 1.09000 * 109.47342 * 95.15445 * 20 19 18 34 34 H 1.09004 * 109.46819 * 215.15113 * 20 19 18 35 35 H 1.09000 * 109.47156 * 335.14744 * 20 19 18 36 36 H 1.08997 * 109.47462 * 303.55687 * 23 22 21 37 37 H 1.08997 * 109.46922 * 63.56114 * 23 22 21 38 38 H 1.08997 * 109.46577 * 183.56074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5988 1.9838 -0.8370 5 6 3.5409 1.4447 -0.1355 6 1 4.1522 1.8872 0.6371 7 6 4.1337 0.8819 -1.2458 8 7 3.3892 0.3435 -2.1869 9 14 5.9941 0.8840 -1.4133 10 1 6.5946 0.1461 -0.2732 11 1 6.3770 0.2242 -2.6874 12 1 6.4896 2.2839 -1.4131 13 6 1.6513 2.1128 1.2925 14 8 2.3736 2.0228 2.2641 15 6 0.4421 2.8483 1.3740 16 6 -0.0867 3.4787 2.5283 17 6 0.5409 3.4859 3.8984 18 7 -1.2093 4.0504 2.1988 19 7 -1.4614 3.8254 0.8414 20 6 -2.6267 4.3087 0.0969 21 6 -0.4511 3.0965 0.3321 22 8 -0.3275 2.6794 -0.9486 23 6 0.2273 3.6079 -1.8826 24 1 -0.3633 -1.0230 -0.0988 25 1 -0.3633 0.4258 0.9353 26 1 -0.3633 0.5969 -0.8364 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8063 -0.0528 -2.9678 30 1 1.1753 4.3661 4.0028 31 1 -0.2418 3.5103 4.6565 32 1 1.1432 2.5866 4.0268 33 1 -2.3771 5.2459 -0.4005 34 1 -2.9147 3.5673 -0.6484 35 1 -3.4556 4.4724 0.7856 36 1 -0.3625 4.5245 -1.8776 37 1 1.2553 3.8358 -1.6012 38 1 0.2121 3.1715 -2.8812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158547157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:57 Heat of formation + Delta-G solvation = 0.856257 kcal Electronic energy + Delta-G solvation = -21618.804691 eV Core-core repulsion = 18464.023709 eV Total energy + Delta-G solvation = -3154.780982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36343 -38.04038 -37.97955 -34.08535 -33.64354 -31.56501 -30.01330 -29.09785 -27.81398 -26.83127 -25.73343 -23.57251 -22.10080 -20.75598 -19.57305 -18.67426 -17.17561 -16.37645 -16.28341 -15.35226 -15.13253 -14.64022 -14.59730 -14.17052 -13.68806 -13.26294 -13.17940 -12.91292 -12.60948 -12.54243 -12.16141 -12.02555 -11.88699 -11.58610 -11.31747 -11.15392 -10.98348 -10.76220 -10.57921 -10.11051 -9.91879 -9.79825 -9.54619 -8.97633 -8.78648 -8.34932 -8.17455 -8.02487 -5.94570 -3.98564 1.49019 2.34935 2.40085 3.37264 3.40473 3.46136 3.65157 4.12677 4.48785 4.50729 5.03445 5.08339 5.18453 5.31433 5.33328 5.36759 5.51917 5.58076 5.85069 5.91205 5.95335 6.11846 6.27992 6.31723 6.36046 6.43327 6.62049 6.79669 6.99095 7.09341 7.22850 7.41714 7.61849 7.76420 7.82155 7.90965 8.14345 8.42688 8.97070 9.06390 9.64283 11.10909 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022321 B = 0.007327 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.148815 B = 3820.817725 C = 4353.118027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C 0.007 3.993 4 H 0.062 0.938 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.429 3.571 14 O -0.482 6.482 15 C -0.306 4.306 16 C 0.131 3.869 17 C -0.075 4.075 18 N -0.299 5.299 19 N -0.377 5.377 20 C 0.096 3.904 21 C 0.317 3.683 22 O -0.289 6.289 23 C 0.032 3.968 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.032 0.968 28 H 0.101 0.899 29 H 0.259 0.741 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.254 7.173 1.191 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.140 4.140 3 C -0.012 4.012 4 H 0.080 0.920 5 C -0.540 4.540 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.310 3.690 14 O -0.360 6.360 15 C -0.319 4.319 16 C -0.036 4.036 17 C -0.134 4.134 18 N -0.124 5.124 19 N -0.166 5.166 20 C -0.046 4.046 21 C 0.145 3.855 22 O -0.198 6.198 23 C -0.062 4.062 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.970 7.551 1.672 14.251 hybrid contribution 1.386 -0.243 -0.752 1.596 sum -10.584 7.308 0.920 12.895 Atomic orbital electron populations 1.21995 0.99076 0.99190 1.00452 1.21387 0.91681 0.98210 1.02740 1.19309 0.97070 0.93710 0.91081 0.92002 1.21115 0.90528 1.37452 1.04878 0.91936 1.24901 0.97952 0.95334 0.95740 1.69871 1.34640 1.39137 1.09464 0.86648 0.85953 0.78208 0.77160 1.20194 1.21405 1.20405 1.21024 0.80964 0.75607 0.91421 1.90340 1.51493 1.54910 1.39253 1.20299 1.02574 1.15880 0.93137 1.22500 0.91502 0.92760 0.96795 1.20344 0.99823 1.04874 0.88352 1.77020 1.19373 1.25809 0.90194 1.48880 1.18478 1.41124 1.08150 1.21897 0.86194 1.00332 0.96132 1.19823 0.87928 0.91353 0.86411 1.86178 1.81998 1.38224 1.13433 1.23177 0.99023 0.91714 0.92298 0.95083 0.95190 0.91973 0.94939 0.88133 0.93076 0.90285 0.91333 0.88455 0.90859 0.89261 0.88855 0.94163 0.91217 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.50 37.16 0.32 -2.82 16 2 C -0.10 -2.51 5.23 -26.73 -0.14 -2.65 16 3 C 0.01 0.18 1.75 -92.92 -0.16 0.02 16 4 H 0.06 1.54 4.17 -51.93 -0.22 1.32 16 5 C -0.50 -14.14 8.32 -34.44 -0.29 -14.43 16 6 H 0.06 1.84 7.20 -52.49 -0.38 1.46 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.62 11.29 55.43 0.63 -23.99 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.43 10.27 5.46 -32.96 -0.18 10.09 16 14 O -0.48 -12.35 14.46 5.46 0.08 -12.27 16 15 C -0.31 -6.30 4.92 -106.75 -0.53 -6.82 16 16 C 0.13 2.41 7.27 -81.93 -0.60 1.82 16 17 C -0.08 -1.18 9.89 36.01 0.36 -0.82 16 18 N -0.30 -5.14 12.46 33.96 0.42 -4.72 16 19 N -0.38 -5.88 3.99 -67.59 -0.27 -6.15 16 20 C 0.10 0.96 11.37 59.84 0.68 1.64 16 21 C 0.32 5.70 5.96 -15.89 -0.09 5.60 16 22 O -0.29 -4.97 5.89 -17.46 -0.10 -5.08 16 23 C 0.03 0.46 10.21 101.05 1.03 1.49 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.03 0.61 6.59 -51.93 -0.34 0.27 16 26 H 0.06 1.27 5.75 -51.93 -0.30 0.97 16 27 H 0.03 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.67 6.47 -51.93 -0.34 1.34 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 1.15 7.51 -51.93 -0.39 0.76 16 38 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -32.17 308.35 -4.52 -36.69 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.21 Total: -0.37 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 0.31 Total: -5.29 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.78 Total: -34.86 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.02 Total: -17.34 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.17 -4.52 -36.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158547157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.543 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds