Wall clock time and date at job start Mon Mar 30 2020 05:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 H 1.09000 * 109.47065 * 305.47041 * 3 2 1 5 5 C 1.50706 * 109.47221 * 185.47252 * 3 2 1 6 6 H 1.07999 * 119.99757 * 239.99845 * 5 3 2 7 7 C 1.37871 * 120.00098 * 59.99856 * 5 3 2 8 8 N 1.31519 * 119.99873 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99941 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47055 * 60.00224 * 9 7 5 11 11 H 1.48503 * 109.46742 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47162 * 299.99537 * 9 7 5 13 13 C 1.50698 * 109.47363 * 65.47058 * 3 2 1 14 14 O 1.21395 * 120.00087 * 87.31527 * 13 3 2 15 15 C 1.41768 * 120.00082 * 267.32221 * 13 3 2 16 16 C 1.41753 * 126.56173 * 176.89784 * 15 13 3 17 17 C 1.50704 * 125.95062 * 359.96410 * 16 15 13 18 18 N 1.30217 * 108.11047 * 179.97438 * 16 15 13 19 19 N 1.39884 * 109.28148 * 359.97438 * 18 16 15 20 20 C 1.46491 * 125.69282 * 180.02562 * 19 18 16 21 21 C 1.34588 * 108.60935 * 359.72616 * 19 18 16 22 22 O 1.35255 * 126.43630 * 180.26794 * 21 19 18 23 23 C 1.42901 * 116.99856 * 83.36670 * 22 21 19 24 24 H 1.09005 * 109.46937 * 174.48473 * 1 2 3 25 25 H 1.09001 * 109.46926 * 294.47979 * 1 2 3 26 26 H 1.08992 * 109.47086 * 54.48674 * 1 2 3 27 27 H 1.09008 * 109.47343 * 119.99883 * 2 1 3 28 28 H 1.08995 * 109.47554 * 240.00073 * 2 1 3 29 29 H 0.96996 * 120.00025 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47355 * 91.82389 * 17 16 15 31 31 H 1.08995 * 109.47275 * 211.82766 * 17 16 15 32 32 H 1.08999 * 109.46812 * 331.82452 * 17 16 15 33 33 H 1.09000 * 109.47342 * 95.15445 * 20 19 18 34 34 H 1.09004 * 109.46819 * 215.15113 * 20 19 18 35 35 H 1.09000 * 109.47156 * 335.14744 * 20 19 18 36 36 H 1.08997 * 109.47462 * 303.55687 * 23 22 21 37 37 H 1.08997 * 109.46922 * 63.56114 * 23 22 21 38 38 H 1.08997 * 109.46577 * 183.56074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5988 1.9838 -0.8370 5 6 3.5409 1.4447 -0.1355 6 1 4.1522 1.8872 0.6371 7 6 4.1337 0.8819 -1.2458 8 7 3.3892 0.3435 -2.1869 9 14 5.9941 0.8840 -1.4133 10 1 6.5946 0.1461 -0.2732 11 1 6.3770 0.2242 -2.6874 12 1 6.4896 2.2839 -1.4131 13 6 1.6513 2.1128 1.2925 14 8 2.3736 2.0228 2.2641 15 6 0.4421 2.8483 1.3740 16 6 -0.0867 3.4787 2.5283 17 6 0.5409 3.4859 3.8984 18 7 -1.2093 4.0504 2.1988 19 7 -1.4614 3.8254 0.8414 20 6 -2.6267 4.3087 0.0969 21 6 -0.4511 3.0965 0.3321 22 8 -0.3275 2.6794 -0.9486 23 6 0.2273 3.6079 -1.8826 24 1 -0.3633 -1.0230 -0.0988 25 1 -0.3633 0.4258 0.9353 26 1 -0.3633 0.5969 -0.8364 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8063 -0.0528 -2.9678 30 1 1.1753 4.3661 4.0028 31 1 -0.2418 3.5103 4.6565 32 1 1.1432 2.5866 4.0268 33 1 -2.3771 5.2459 -0.4005 34 1 -2.9147 3.5673 -0.6484 35 1 -3.4556 4.4724 0.7856 36 1 -0.3625 4.5245 -1.8776 37 1 1.2553 3.8358 -1.6012 38 1 0.2121 3.1715 -2.8812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158547157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:56 Heat of formation + Delta-G solvation = -20.285133 kcal Electronic energy + Delta-G solvation = -21619.721451 eV Core-core repulsion = 18464.023709 eV Total energy + Delta-G solvation = -3155.697741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.73779 -39.80361 -39.33312 -36.05836 -34.87040 -33.56670 -31.40835 -30.29457 -29.62025 -28.22298 -26.95128 -25.44269 -23.70617 -22.33241 -21.01449 -20.32083 -18.53758 -18.34977 -17.57420 -16.94662 -16.78542 -16.29386 -15.99930 -15.72284 -15.21531 -14.83080 -14.46891 -14.37234 -14.23040 -13.79261 -13.59076 -13.42210 -13.19646 -13.11016 -13.01293 -12.77753 -12.66882 -12.47210 -12.30719 -12.05780 -11.74820 -11.53391 -11.20729 -10.81978 -10.41677 -10.22398 -9.91538 -9.62503 -8.05882 -6.16860 0.07011 0.93717 1.14848 1.41792 1.43989 1.51838 2.22848 2.46196 2.60672 3.20487 3.29588 3.82949 3.97748 4.16406 4.31406 4.34718 4.36666 4.46877 4.59449 4.62301 4.63416 4.75092 4.76027 4.79684 4.89210 4.94171 5.10353 5.18503 5.23945 5.39316 5.51557 5.53777 5.69387 5.88723 6.06565 6.32040 6.36217 6.47811 6.87283 7.16833 7.48244 8.97741 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022321 B = 0.007327 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.148815 B = 3820.817725 C = 4353.118027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C 0.003 3.997 4 H 0.067 0.933 5 C -0.531 4.531 6 H 0.038 0.962 7 C 0.026 3.974 8 N -0.903 5.903 9 Si 0.946 3.054 10 H -0.282 1.282 11 H -0.274 1.274 12 H -0.274 1.274 13 C 0.429 3.571 14 O -0.517 6.517 15 C -0.350 4.350 16 C 0.125 3.875 17 C -0.073 4.073 18 N -0.297 5.297 19 N -0.363 5.363 20 C 0.080 3.920 21 C 0.332 3.668 22 O -0.300 6.300 23 C 0.029 3.971 24 H 0.049 0.951 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.010 0.990 28 H 0.079 0.921 29 H 0.264 0.736 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.145 8.285 0.253 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 C -0.015 4.015 4 H 0.085 0.915 5 C -0.569 4.569 6 H 0.056 0.944 7 C -0.173 4.173 8 N -0.542 5.542 9 Si 0.772 3.228 10 H -0.208 1.208 11 H -0.199 1.199 12 H -0.199 1.199 13 C 0.312 3.688 14 O -0.398 6.398 15 C -0.363 4.363 16 C -0.041 4.041 17 C -0.132 4.132 18 N -0.122 5.122 19 N -0.151 5.151 20 C -0.058 4.058 21 C 0.156 3.844 22 O -0.209 6.209 23 C -0.065 4.065 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.029 0.971 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.903 8.681 0.713 16.407 hybrid contribution 1.881 -0.543 -0.545 2.032 sum -12.023 8.138 0.168 14.519 Atomic orbital electron populations 1.21817 0.96002 1.00582 1.00737 1.21243 0.94363 0.97457 1.00449 1.19307 0.95558 0.94312 0.92372 0.91512 1.21279 0.92303 1.38493 1.04871 0.94406 1.25484 1.01722 0.94790 0.95324 1.69943 1.35919 1.38792 1.09512 0.85810 0.81386 0.78333 0.77282 1.20786 1.19913 1.19905 1.20971 0.82031 0.75497 0.90283 1.90310 1.52961 1.56638 1.39874 1.20046 1.02655 1.18174 0.95453 1.22768 0.91732 0.92425 0.97187 1.20366 1.00487 1.04220 0.88099 1.76999 1.18561 1.25555 0.91083 1.49268 1.18812 1.39298 1.07706 1.22451 0.84738 1.01942 0.96691 1.19674 0.87915 0.90525 0.86282 1.86119 1.82024 1.39536 1.13264 1.23353 0.97961 0.93128 0.92011 0.93190 0.95208 0.91178 0.97132 0.90295 0.92715 0.89296 0.88539 0.90613 0.88235 0.87470 0.86929 0.90284 0.94123 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.53 8.50 71.98 0.61 -4.92 16 2 C -0.10 -4.88 5.23 30.59 0.16 -4.72 16 3 C 0.00 0.17 1.75 -12.28 -0.02 0.15 16 4 H 0.07 3.37 4.17 -2.39 -0.01 3.36 16 5 C -0.53 -31.07 8.32 25.60 0.21 -30.86 16 6 H 0.04 2.34 7.20 -2.91 -0.02 2.32 16 7 C 0.03 1.47 5.29 84.65 0.45 1.92 16 8 N -0.90 -50.12 11.29 21.45 0.24 -49.88 16 9 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 C 0.43 21.21 5.46 26.56 0.15 21.35 16 14 O -0.52 -27.85 14.46 -3.39 -0.05 -27.90 16 15 C -0.35 -14.43 4.92 -21.24 -0.10 -14.53 16 16 C 0.13 4.53 7.27 43.67 0.32 4.84 16 17 C -0.07 -2.27 9.89 71.24 0.70 -1.57 16 18 N -0.30 -9.55 12.46 -46.48 -0.58 -10.13 16 19 N -0.36 -10.26 3.99 -479.62 -1.91 -12.17 16 20 C 0.08 1.27 11.37 127.77 1.45 2.72 16 21 C 0.33 11.39 5.96 84.57 0.50 11.89 16 22 O -0.30 -9.78 5.89 -85.39 -0.50 -10.29 16 23 C 0.03 0.78 10.21 113.37 1.16 1.94 16 24 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 25 H 0.03 1.21 6.59 -2.39 -0.02 1.19 16 26 H 0.07 2.76 5.75 -2.39 -0.01 2.75 16 27 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.08 4.30 5.94 -2.39 -0.01 4.29 16 29 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.08 2.69 6.47 -2.39 -0.02 2.68 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.04 1.32 7.51 -2.39 -0.02 1.30 16 38 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -71.26 308.35 5.88 -65.38 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.07 Total: 10.07 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 5.59 Total: -11.78 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -2.25 Total: -72.18 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.55 Total: -38.19 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -71.26 5.88 -65.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158547157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.091 kcal (2) G-P(sol) polarization free energy of solvation -71.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds