Wall clock time and date at job start Mon Mar 30 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31020 * 1 3 3 Si 1.86797 * 120.00055 * 2 1 4 4 H 1.48497 * 109.47367 * 269.99663 * 3 2 1 5 5 H 1.48498 * 109.47463 * 30.00085 * 3 2 1 6 6 H 1.48503 * 109.47136 * 149.99777 * 3 2 1 7 7 C 1.39587 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00272 * 180.02562 * 7 2 1 9 9 N 1.36125 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99683 * 180.02562 * 9 7 2 11 11 O 1.21502 * 120.00554 * 359.97438 * 10 9 7 12 12 C 1.48837 * 119.99618 * 179.97438 * 10 9 7 13 13 O 1.21436 * 120.00339 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99552 * 179.97438 * 12 10 9 15 15 C 1.48279 * 126.43715 * 359.96048 * 14 12 10 16 16 C 1.55343 * 106.99679 * 174.91676 * 15 14 12 17 17 C 1.53666 * 101.81615 * 337.58159 * 16 15 14 18 18 H 1.08996 * 111.10818 * 281.47755 * 17 16 15 19 19 C 1.51923 * 115.23274 * 153.32671 * 17 16 15 20 20 C 1.53706 * 107.28816 * 185.15070 * 19 17 16 21 21 C 1.52576 * 111.48901 * 58.13342 * 20 19 17 22 22 C 1.53772 * 111.37515 * 305.15347 * 21 20 19 23 23 C 1.45383 * 126.43742 * 179.97438 * 14 12 10 24 24 H 1.09002 * 108.66744 * 94.37200 * 23 14 12 25 25 H 0.97008 * 119.99538 * 0.02562 * 1 2 3 26 26 H 0.96997 * 119.99596 * 359.97438 * 9 7 2 27 27 H 1.08993 * 109.91673 * 55.59596 * 15 14 12 28 28 H 1.09002 * 109.95541 * 294.25880 * 15 14 12 29 29 H 1.09002 * 110.96573 * 219.44137 * 16 15 14 30 30 H 1.09003 * 110.96573 * 95.72340 * 16 15 14 31 31 H 1.08999 * 109.89628 * 304.59908 * 19 17 16 32 32 H 1.09004 * 109.89284 * 65.70638 * 19 17 16 33 33 H 1.08996 * 109.07435 * 297.61751 * 20 19 17 34 34 H 1.08996 * 109.01721 * 178.61472 * 20 19 17 35 35 H 1.08999 * 109.09798 * 184.66015 * 21 20 19 36 36 H 1.09004 * 109.09831 * 65.63597 * 21 20 19 37 37 H 1.08997 * 109.87779 * 297.81089 * 22 21 20 38 38 H 1.09004 * 109.94234 * 176.77703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4918 2.0464 -1.4000 5 1 1.4417 2.6527 0.7000 6 1 3.5418 1.4401 0.7001 7 6 2.0081 -1.2089 0.0005 8 1 3.0881 -1.2090 0.0010 9 7 1.3274 -2.3877 0.0005 10 6 2.0013 -3.5549 0.0016 11 8 3.2163 -3.5550 0.0021 12 6 1.2570 -4.8438 0.0022 13 8 0.0427 -4.8438 0.0012 14 7 1.9309 -6.0110 0.0027 15 6 3.4044 -6.1772 0.0019 16 6 3.6898 -7.6984 0.1346 17 6 2.3870 -8.2088 0.7698 18 1 2.3636 -7.9998 1.8393 19 6 2.0490 -9.6607 0.4767 20 6 0.6638 -9.9384 1.0822 21 6 -0.3949 -9.0012 0.5089 22 6 0.0086 -7.5274 0.6816 23 6 1.3498 -7.3436 0.0038 24 1 1.2821 -7.6956 -1.0256 25 1 -0.4850 0.8402 -0.0004 26 1 0.3574 -2.3876 0.0005 27 1 3.8387 -5.6428 0.8467 28 1 3.8207 -5.8014 -0.9327 29 1 4.5409 -7.8798 0.7910 30 1 3.8506 -8.1519 -0.8435 31 1 2.0228 -9.8253 -0.6004 32 1 2.7917 -10.3141 0.9346 33 1 0.7133 -9.8017 2.1624 34 1 0.3819 -10.9689 0.8663 35 1 -1.3405 -9.1747 1.0224 36 1 -0.5224 -9.2139 -0.5525 37 1 0.0935 -7.2882 1.7416 38 1 -0.7347 -6.8813 0.2145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162659379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:24 Heat of formation + Delta-G solvation = -82.131188 kcal Electronic energy + Delta-G solvation = -20763.115423 eV Core-core repulsion = 17604.735836 eV Total energy + Delta-G solvation = -3158.379588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48498 -38.58347 -36.87491 -35.41326 -34.10747 -32.09650 -31.34743 -29.59717 -28.33570 -25.88545 -23.88079 -22.69332 -21.43008 -21.05172 -20.09136 -18.68284 -17.99225 -16.39985 -16.07983 -15.50882 -15.06057 -14.79480 -14.39329 -14.20764 -14.03615 -13.77050 -13.41289 -13.08377 -12.74231 -12.53197 -12.38151 -11.87448 -11.82294 -11.73748 -11.21476 -11.19779 -11.16728 -10.78099 -10.70106 -10.52847 -10.47806 -10.38350 -10.17055 -9.76143 -9.69033 -8.26302 -8.16272 -8.11039 -6.64422 -3.96842 2.48763 3.15672 3.16047 3.20764 3.31619 4.05169 4.29089 4.37024 4.63190 4.67678 4.91816 5.02996 5.08784 5.18668 5.21460 5.32794 5.43855 5.46298 5.49225 5.54458 5.74853 5.82100 5.89417 6.02778 6.04128 6.07656 6.10011 6.17371 6.29119 6.38144 6.43223 6.45926 6.82453 7.33244 7.77631 7.90220 8.33117 8.64169 8.99066 9.35376 9.88206 10.50647 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040325 B = 0.004516 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.183371 B = 6199.267808 C = 6792.809588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.031 3.969 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.305 4.305 8 H 0.112 0.888 9 N -0.502 5.502 10 C 0.398 3.602 11 O -0.592 6.592 12 C 0.529 3.471 13 O -0.544 6.544 14 N -0.598 5.598 15 C 0.120 3.880 16 C -0.131 4.131 17 C -0.107 4.107 18 H 0.085 0.915 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.121 4.121 23 C 0.136 3.864 24 H 0.064 0.936 25 H 0.280 0.720 26 H 0.404 0.596 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 -16.558 1.084 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.436 4.436 8 H 0.130 0.870 9 N -0.136 5.136 10 C 0.182 3.818 11 O -0.480 6.480 12 C 0.316 3.684 13 O -0.421 6.421 14 N -0.332 5.332 15 C -0.003 4.003 16 C -0.169 4.169 17 C -0.126 4.126 18 H 0.103 0.897 19 C -0.142 4.142 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.159 4.159 23 C 0.031 3.969 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.240 0.760 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.439 -16.299 1.077 16.515 hybrid contribution -0.203 0.834 -0.021 0.858 sum 2.236 -15.465 1.056 15.662 Atomic orbital electron populations 1.69492 1.06505 1.29260 1.45607 1.25571 0.95614 1.00407 0.96007 0.85731 0.79360 0.79764 0.78751 1.19936 1.20546 1.18934 1.19859 0.93914 0.81878 1.47952 0.87042 1.41544 1.10442 1.04144 1.57479 1.18921 0.87856 0.84136 0.90854 1.90560 1.12841 1.86452 1.58144 1.20454 0.87014 0.84640 0.76287 1.90653 1.13832 1.87324 1.50334 1.47919 1.07964 1.04301 1.73047 1.22414 0.79639 0.94524 1.03680 1.22658 0.97534 0.95424 1.01285 1.22263 0.94932 0.95025 1.00353 0.89680 1.21407 0.96692 0.95043 1.01097 1.21571 0.94736 0.98988 1.00481 1.21539 0.98319 0.94322 1.01156 1.21599 0.96964 0.96185 1.01179 1.21362 0.94451 0.82195 0.98850 0.91824 0.90983 0.76049 0.90064 0.90817 0.90236 0.90816 0.91544 0.91528 0.92107 0.92129 0.91785 0.92148 0.91809 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.59 13.03 55.53 0.72 -22.86 16 2 C 0.03 0.80 5.51 -17.39 -0.10 0.71 16 3 Si 0.94 20.25 29.56 -169.99 -5.02 15.22 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.31 -8.49 9.67 -15.14 -0.15 -8.64 16 8 H 0.11 3.15 7.15 -52.49 -0.38 2.78 16 9 N -0.50 -13.64 5.25 -11.59 -0.06 -13.70 16 10 C 0.40 10.23 7.79 -11.87 -0.09 10.14 16 11 O -0.59 -15.79 13.79 5.36 0.07 -15.71 16 12 C 0.53 12.03 7.82 -11.87 -0.09 11.94 16 13 O -0.54 -13.02 14.62 5.42 0.08 -12.94 16 14 N -0.60 -11.10 3.28 -164.32 -0.54 -11.64 16 15 C 0.12 1.94 5.58 -1.82 -0.01 1.93 16 16 C -0.13 -1.50 6.55 -25.14 -0.16 -1.67 16 17 C -0.11 -1.24 2.64 -89.61 -0.24 -1.48 16 18 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 19 C -0.10 -0.95 5.61 -26.91 -0.15 -1.11 16 20 C -0.12 -1.09 5.84 -26.58 -0.16 -1.25 16 21 C -0.12 -1.24 5.84 -26.55 -0.16 -1.40 16 22 C -0.12 -1.76 5.04 -27.14 -0.14 -1.89 16 23 C 0.14 2.01 2.49 -68.13 -0.17 1.84 16 24 H 0.06 0.93 7.90 -51.93 -0.41 0.52 16 25 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 26 H 0.40 11.10 7.35 -40.82 -0.30 10.80 16 27 H 0.08 1.43 7.41 -51.93 -0.38 1.05 16 28 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.07 0.59 7.99 -51.93 -0.41 0.17 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 38 H 0.09 1.52 6.53 -51.93 -0.34 1.18 16 LS Contribution 305.02 15.07 4.60 4.60 Total: -1.00 -30.18 305.02 -7.33 -37.51 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.57 Total: 10.39 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -1.61 Total: 9.13 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.12 Total: -48.20 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: 0.15 Total: -28.65 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.18 -7.33 -37.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162659379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.620 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds