Wall clock time and date at job start Mon Mar 30 2020 04:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31020 * 1 3 3 Si 1.86797 * 120.00055 * 2 1 4 4 H 1.48497 * 109.47367 * 269.99663 * 3 2 1 5 5 H 1.48498 * 109.47463 * 30.00085 * 3 2 1 6 6 H 1.48503 * 109.47136 * 149.99777 * 3 2 1 7 7 C 1.39587 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00272 * 180.02562 * 7 2 1 9 9 N 1.36125 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99683 * 180.02562 * 9 7 2 11 11 O 1.21502 * 120.00554 * 359.97438 * 10 9 7 12 12 C 1.48837 * 119.99618 * 179.97438 * 10 9 7 13 13 O 1.21436 * 120.00339 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99552 * 179.97438 * 12 10 9 15 15 C 1.48279 * 126.43715 * 359.96048 * 14 12 10 16 16 C 1.55343 * 106.99679 * 174.91676 * 15 14 12 17 17 C 1.53666 * 101.81615 * 337.58159 * 16 15 14 18 18 H 1.08996 * 111.10818 * 281.47755 * 17 16 15 19 19 C 1.51923 * 115.23274 * 153.32671 * 17 16 15 20 20 C 1.53706 * 107.28816 * 185.15070 * 19 17 16 21 21 C 1.52576 * 111.48901 * 58.13342 * 20 19 17 22 22 C 1.53772 * 111.37515 * 305.15347 * 21 20 19 23 23 C 1.45383 * 126.43742 * 179.97438 * 14 12 10 24 24 H 1.09002 * 108.66744 * 94.37200 * 23 14 12 25 25 H 0.97008 * 119.99538 * 0.02562 * 1 2 3 26 26 H 0.96997 * 119.99596 * 359.97438 * 9 7 2 27 27 H 1.08993 * 109.91673 * 55.59596 * 15 14 12 28 28 H 1.09002 * 109.95541 * 294.25880 * 15 14 12 29 29 H 1.09002 * 110.96573 * 219.44137 * 16 15 14 30 30 H 1.09003 * 110.96573 * 95.72340 * 16 15 14 31 31 H 1.08999 * 109.89628 * 304.59908 * 19 17 16 32 32 H 1.09004 * 109.89284 * 65.70638 * 19 17 16 33 33 H 1.08996 * 109.07435 * 297.61751 * 20 19 17 34 34 H 1.08996 * 109.01721 * 178.61472 * 20 19 17 35 35 H 1.08999 * 109.09798 * 184.66015 * 21 20 19 36 36 H 1.09004 * 109.09831 * 65.63597 * 21 20 19 37 37 H 1.08997 * 109.87779 * 297.81089 * 22 21 20 38 38 H 1.09004 * 109.94234 * 176.77703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4918 2.0464 -1.4000 5 1 1.4417 2.6527 0.7000 6 1 3.5418 1.4401 0.7001 7 6 2.0081 -1.2089 0.0005 8 1 3.0881 -1.2090 0.0010 9 7 1.3274 -2.3877 0.0005 10 6 2.0013 -3.5549 0.0016 11 8 3.2163 -3.5550 0.0021 12 6 1.2570 -4.8438 0.0022 13 8 0.0427 -4.8438 0.0012 14 7 1.9309 -6.0110 0.0027 15 6 3.4044 -6.1772 0.0019 16 6 3.6898 -7.6984 0.1346 17 6 2.3870 -8.2088 0.7698 18 1 2.3636 -7.9998 1.8393 19 6 2.0490 -9.6607 0.4767 20 6 0.6638 -9.9384 1.0822 21 6 -0.3949 -9.0012 0.5089 22 6 0.0086 -7.5274 0.6816 23 6 1.3498 -7.3436 0.0038 24 1 1.2821 -7.6956 -1.0256 25 1 -0.4850 0.8402 -0.0004 26 1 0.3574 -2.3876 0.0005 27 1 3.8387 -5.6428 0.8467 28 1 3.8207 -5.8014 -0.9327 29 1 4.5409 -7.8798 0.7910 30 1 3.8506 -8.1519 -0.8435 31 1 2.0228 -9.8253 -0.6004 32 1 2.7917 -10.3141 0.9346 33 1 0.7133 -9.8017 2.1624 34 1 0.3819 -10.9689 0.8663 35 1 -1.3405 -9.1747 1.0224 36 1 -0.5224 -9.2139 -0.5525 37 1 0.0935 -7.2882 1.7416 38 1 -0.7347 -6.8813 0.2145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162659379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:23 Heat of formation + Delta-G solvation = -102.269299 kcal Electronic energy + Delta-G solvation = -20763.988677 eV Core-core repulsion = 17604.735836 eV Total energy + Delta-G solvation = -3159.252842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.89864 -40.26573 -38.72588 -36.76324 -35.99632 -33.56828 -33.12010 -30.76174 -29.40377 -27.86795 -25.53482 -23.76188 -22.99384 -22.02999 -21.07400 -20.61305 -19.85135 -18.20109 -17.69865 -17.02894 -16.78454 -16.21682 -15.82095 -15.53542 -15.45511 -15.18489 -14.79283 -14.48273 -14.35655 -13.74411 -13.68798 -13.55959 -13.11985 -12.97922 -12.75234 -12.58190 -12.34298 -12.26268 -12.14052 -12.10583 -11.72240 -11.64098 -11.42007 -11.24590 -10.90691 -10.28806 -10.06146 -9.72570 -8.66715 -6.11886 0.58868 1.39060 1.45689 1.53699 1.70789 2.26150 2.34853 2.99254 3.13654 3.47365 3.65023 3.74232 3.98435 4.11367 4.14180 4.16826 4.35817 4.39400 4.48364 4.55153 4.61204 4.84067 4.91848 4.98958 5.03106 5.09591 5.15648 5.23503 5.25246 5.28442 5.33008 5.38660 5.47833 5.59490 5.68326 6.21689 6.32656 6.75191 6.97190 7.27477 7.78896 8.49425 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040325 B = 0.004516 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.183371 B = 6199.267808 C = 6792.809588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.006 4.006 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.345 4.345 8 H 0.099 0.901 9 N -0.514 5.514 10 C 0.392 3.608 11 O -0.606 6.606 12 C 0.525 3.475 13 O -0.565 6.565 14 N -0.592 5.592 15 C 0.110 3.890 16 C -0.113 4.113 17 C -0.094 4.094 18 H 0.079 0.921 19 C -0.098 4.098 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.120 4.120 23 C 0.119 3.881 24 H 0.073 0.927 25 H 0.289 0.711 26 H 0.399 0.601 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.572 -18.577 1.124 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.117 0.883 9 N -0.148 5.148 10 C 0.177 3.823 11 O -0.495 6.495 12 C 0.311 3.689 13 O -0.445 6.445 14 N -0.324 5.324 15 C -0.012 4.012 16 C -0.151 4.151 17 C -0.113 4.113 18 H 0.097 0.903 19 C -0.136 4.136 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.158 4.158 23 C 0.017 3.983 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.233 0.767 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.513 -18.369 1.117 18.735 hybrid contribution -0.541 1.390 -0.037 1.492 sum 2.972 -16.979 1.079 17.271 Atomic orbital electron populations 1.69566 1.07894 1.30764 1.45410 1.26561 0.96501 1.03494 0.94399 0.84680 0.77983 0.74936 0.79209 1.18917 1.19083 1.18729 1.19973 0.93638 0.83015 1.50830 0.88336 1.41646 1.10128 1.04750 1.58302 1.19567 0.87992 0.85087 0.89681 1.90524 1.13520 1.87092 1.58390 1.19912 0.86683 0.85010 0.77300 1.90642 1.14304 1.87701 1.51822 1.48063 1.09424 1.04532 1.70406 1.22606 0.77902 0.98429 1.02234 1.22647 0.98267 0.90980 1.03200 1.22276 0.93351 0.96206 0.99449 0.90270 1.21430 0.97213 0.92918 1.02019 1.21574 0.94035 0.99567 1.00363 1.21515 0.99471 0.91749 1.01959 1.21554 0.95946 0.98515 0.99798 1.21792 0.95904 0.80478 1.00158 0.90898 0.90140 0.76665 0.92014 0.92003 0.87630 0.88593 0.90582 0.88958 0.92072 0.89721 0.91091 0.91490 0.93127 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.52 13.03 21.77 0.28 -49.23 16 2 C -0.01 -0.30 5.51 85.14 0.47 0.17 16 3 Si 1.01 41.54 29.56 68.60 2.03 43.57 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.34 -19.91 9.67 84.35 0.82 -19.10 16 8 H 0.10 5.81 7.15 -2.91 -0.02 5.79 16 9 N -0.51 -29.37 5.25 -308.87 -1.62 -30.99 16 10 C 0.39 21.13 7.79 87.08 0.68 21.80 16 11 O -0.61 -33.70 13.79 -3.72 -0.05 -33.75 16 12 C 0.53 24.96 7.82 87.08 0.68 25.64 16 13 O -0.56 -28.42 14.62 -3.51 -0.05 -28.47 16 14 N -0.59 -22.33 3.28 -792.12 -2.60 -24.93 16 15 C 0.11 3.54 5.58 86.84 0.48 4.02 16 16 C -0.11 -2.25 6.55 31.62 0.21 -2.04 16 17 C -0.09 -1.92 2.64 -10.14 -0.03 -1.95 16 18 H 0.08 1.75 8.13 -2.39 -0.02 1.74 16 19 C -0.10 -1.35 5.61 30.48 0.17 -1.18 16 20 C -0.12 -1.70 5.84 30.69 0.18 -1.52 16 21 C -0.11 -2.13 5.84 30.71 0.18 -1.95 16 22 C -0.12 -3.48 5.04 30.33 0.15 -3.32 16 23 C 0.12 3.44 2.49 45.46 0.11 3.55 16 24 H 0.07 2.01 7.90 -2.39 -0.02 1.99 16 25 H 0.29 14.52 8.30 -92.70 -0.77 13.75 16 26 H 0.40 23.15 7.35 -92.71 -0.68 22.47 16 27 H 0.06 2.22 7.41 -2.39 -0.02 2.20 16 28 H 0.06 2.12 7.94 -2.39 -0.02 2.10 16 29 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.10 1.55 8.13 -2.39 -0.02 1.53 16 31 H 0.08 0.96 7.99 -2.39 -0.02 0.94 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 38 H 0.05 1.91 6.53 -2.38 -0.02 1.89 16 Total: -1.00 -68.69 305.02 2.48 -66.21 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 0.38 Total: 33.46 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 4.11 Total: 24.13 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -3.94 Total: -105.15 kcal Atomic # 8 Polarization: -62.12 SS G_CDS: -0.10 Total: -62.22 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -68.69 2.48 -66.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162659379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.060 kcal (2) G-P(sol) polarization free energy of solvation -68.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds