Wall clock time and date at job start Mon Mar 30 2020 04:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86808 * 119.99550 * 2 1 4 4 H 1.48497 * 109.47213 * 270.00170 * 3 2 1 5 5 H 1.48496 * 109.47235 * 30.00530 * 3 2 1 6 6 H 1.48508 * 109.46870 * 150.00733 * 3 2 1 7 7 C 1.39585 * 120.00697 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00561 * 179.97438 * 7 2 1 9 9 N 1.36118 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00262 * 180.02562 * 9 7 2 11 11 O 1.21504 * 119.99603 * 0.02562 * 10 9 7 12 12 C 1.48828 * 120.00195 * 180.02562 * 10 9 7 13 13 O 1.21434 * 120.00173 * 359.97438 * 12 10 9 14 14 N 1.34783 * 119.99857 * 180.02562 * 12 10 9 15 15 C 1.47400 * 126.02093 * 359.97080 * 14 12 10 16 16 C 1.55322 * 107.49684 * 182.19013 * 15 14 12 17 17 C 1.55959 * 102.27399 * 21.64844 * 16 15 14 18 18 H 1.09002 * 112.77667 * 203.78231 * 17 16 15 19 19 C 1.53012 * 106.58140 * 79.95442 * 17 16 15 20 20 C 1.52682 * 110.68735 * 196.83420 * 19 17 16 21 21 C 1.53247 * 108.66992 * 61.97204 * 20 19 17 22 22 C 1.52869 * 108.42920 * 296.81605 * 21 20 19 23 23 C 1.46516 * 126.01905 * 179.97438 * 14 12 10 24 24 H 1.08996 * 107.94504 * 270.04847 * 23 14 12 25 25 H 0.96995 * 120.00431 * 359.97438 * 1 2 3 26 26 H 0.97004 * 120.00192 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.90342 * 300.88903 * 15 14 12 28 28 H 1.09001 * 109.90211 * 61.94711 * 15 14 12 29 29 H 1.09004 * 110.45880 * 263.71011 * 16 15 14 30 30 H 1.08997 * 111.45435 * 140.03686 * 16 15 14 31 31 H 1.09000 * 109.23651 * 317.14725 * 19 17 16 32 32 H 1.09007 * 109.23316 * 76.52397 * 19 17 16 33 33 H 1.08993 * 109.60547 * 181.72933 * 20 19 17 34 34 H 1.09006 * 109.60077 * 302.21970 * 20 19 17 35 35 H 1.08994 * 109.67493 * 56.55154 * 21 20 19 36 36 H 1.09002 * 109.66742 * 177.04719 * 21 20 19 37 37 H 1.09000 * 109.12346 * 179.65410 * 22 21 20 38 38 H 1.09004 * 109.12236 * 298.79610 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6179 0.0000 4 1 2.4915 2.0466 -1.4000 5 1 1.4415 2.6527 0.7001 6 1 3.5418 1.4403 0.6999 7 6 2.0082 -1.2088 -0.0005 8 1 3.0882 -1.2087 -0.0010 9 7 1.3277 -2.3876 -0.0005 10 6 2.0016 -3.5548 -0.0005 11 8 3.2166 -3.5547 -0.0001 12 6 1.2575 -4.8437 -0.0011 13 8 0.0431 -4.8438 -0.0011 14 7 1.9315 -6.0109 -0.0006 15 6 3.3974 -6.1655 -0.0001 16 6 3.7066 -7.6865 -0.0562 17 6 2.3870 -8.2716 -0.6466 18 1 2.2385 -9.3205 -0.3900 19 6 2.4462 -8.0434 -2.1585 20 6 1.0599 -8.1916 -2.7810 21 6 0.1377 -7.1225 -2.1851 22 6 0.0038 -7.3816 -0.6845 23 6 1.3361 -7.3497 -0.0005 24 1 1.1984 -7.6559 1.0364 25 1 -0.4850 0.8400 0.0004 26 1 0.3576 -2.3877 -0.0005 27 1 3.8218 -5.6813 -0.8796 28 1 3.8166 -5.7248 0.9045 29 1 3.8877 -8.0757 0.9458 30 1 4.5508 -7.8978 -0.7125 31 1 2.8229 -7.0397 -2.3557 32 1 3.1206 -8.7736 -2.6057 33 1 1.1274 -8.0561 -3.8604 34 1 0.6631 -9.1822 -2.5584 35 1 0.5669 -6.1343 -2.3500 36 1 -0.8432 -7.1799 -2.6570 37 1 -0.6457 -6.6231 -0.2477 38 1 -0.4414 -8.3646 -0.5302 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162659469.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:26 Heat of formation + Delta-G solvation = -77.977782 kcal Electronic energy + Delta-G solvation = -21219.237092 eV Core-core repulsion = 18061.037609 eV Total energy + Delta-G solvation = -3158.199482 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65242 -38.45631 -36.82740 -35.00762 -34.06626 -32.19290 -31.34587 -29.87333 -27.93134 -25.86707 -23.82412 -22.88503 -21.77955 -21.19177 -19.52483 -18.44976 -17.80864 -16.34580 -16.18112 -15.68686 -14.86154 -14.80638 -14.34913 -14.32962 -13.96617 -13.87427 -13.33483 -12.75206 -12.69937 -12.28540 -12.12426 -11.99169 -11.79683 -11.72812 -11.50548 -11.26337 -11.18644 -10.68249 -10.59288 -10.48890 -10.38782 -10.26048 -9.97395 -9.69199 -9.60983 -8.24603 -8.13489 -8.06731 -6.64527 -3.96968 2.48996 3.15262 3.16151 3.21111 3.32895 4.05936 4.29288 4.44892 4.65467 4.75533 4.99929 5.10850 5.20003 5.23724 5.28729 5.40847 5.50923 5.55275 5.61273 5.70080 5.78993 5.89472 5.94819 6.05827 6.10036 6.24716 6.27695 6.33207 6.36740 6.37544 6.50324 6.58557 6.93984 7.33056 7.77570 7.91353 8.33431 8.64722 8.99100 9.35328 9.88132 10.50503 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032378 B = 0.005167 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.581166 B = 5417.690713 C = 5811.720571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.031 3.969 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.305 4.305 8 H 0.111 0.889 9 N -0.502 5.502 10 C 0.397 3.603 11 O -0.592 6.592 12 C 0.531 3.469 13 O -0.542 6.542 14 N -0.594 5.594 15 C 0.118 3.882 16 C -0.135 4.135 17 C -0.097 4.097 18 H 0.093 0.907 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.139 4.139 23 C 0.147 3.853 24 H 0.059 0.941 25 H 0.280 0.720 26 H 0.404 0.596 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -14.910 -2.268 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.436 4.436 8 H 0.129 0.871 9 N -0.136 5.136 10 C 0.182 3.818 11 O -0.480 6.480 12 C 0.318 3.682 13 O -0.420 6.420 14 N -0.329 5.329 15 C -0.005 4.005 16 C -0.173 4.173 17 C -0.116 4.116 18 H 0.111 0.889 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.176 4.176 23 C 0.043 3.957 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.239 0.761 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.734 -14.657 -2.251 15.079 hybrid contribution -0.140 0.785 0.037 0.798 sum 2.594 -13.872 -2.215 14.286 Atomic orbital electron populations 1.69481 1.06495 1.29264 1.45633 1.25564 0.95606 1.00393 0.96019 0.85739 0.79365 0.79799 0.78744 1.19945 1.20550 1.18949 1.19849 0.93897 0.81886 1.47950 0.87076 1.41539 1.10427 1.04131 1.57503 1.18948 0.87869 0.84180 0.90846 1.90566 1.12863 1.86450 1.58112 1.20384 0.86991 0.84533 0.76319 1.90590 1.13812 1.87046 1.50550 1.47964 1.07678 1.04456 1.72815 1.22192 0.80201 0.94538 1.03554 1.23183 0.97486 0.95340 1.01320 1.22404 0.94719 0.98690 0.95804 0.88854 1.21525 0.97176 1.02256 0.94047 1.21543 0.95657 0.99062 0.99363 1.21427 0.99087 0.99046 0.95299 1.21349 0.97000 1.02974 0.96279 1.20817 0.93562 0.82381 0.98892 0.92304 0.90986 0.76058 0.90732 0.90645 0.91084 0.90065 0.91437 0.92212 0.92314 0.92231 0.91941 0.92241 0.87793 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.49 13.03 55.53 0.72 -22.77 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.20 29.56 -169.99 -5.02 15.17 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.31 -8.44 9.67 -15.15 -0.15 -8.59 16 8 H 0.11 3.13 7.15 -52.49 -0.38 2.76 16 9 N -0.50 -13.50 5.25 -11.59 -0.06 -13.56 16 10 C 0.40 10.08 7.79 -11.88 -0.09 9.99 16 11 O -0.59 -15.67 13.72 5.36 0.07 -15.59 16 12 C 0.53 11.75 7.16 -11.87 -0.08 11.66 16 13 O -0.54 -12.55 13.86 5.42 0.08 -12.47 16 14 N -0.59 -10.70 3.01 -165.89 -0.50 -11.20 16 15 C 0.12 1.89 4.79 -2.32 -0.01 1.88 16 16 C -0.14 -1.53 6.40 -23.92 -0.15 -1.69 16 17 C -0.10 -1.10 3.65 -88.51 -0.32 -1.42 16 18 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.11 -1.30 4.89 -26.89 -0.13 -1.43 16 20 C -0.12 -1.37 5.92 -26.77 -0.16 -1.53 16 21 C -0.11 -1.59 5.85 -26.67 -0.16 -1.75 16 22 C -0.14 -2.03 4.75 -28.39 -0.13 -2.16 16 23 C 0.15 2.14 2.84 -68.98 -0.20 1.94 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 26 H 0.40 10.99 7.35 -40.82 -0.30 10.69 16 27 H 0.07 1.30 7.29 -51.93 -0.38 0.92 16 28 H 0.08 1.30 7.73 -51.93 -0.40 0.90 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 31 H 0.07 0.93 6.98 -51.93 -0.36 0.57 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.09 7.51 -51.93 -0.39 0.70 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.85 5.52 -51.93 -0.29 1.56 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 299.90 15.07 4.52 4.52 Total: -1.00 -29.60 299.90 -7.30 -36.90 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.42 Total: 11.38 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.68 Total: 7.61 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.16 Total: -47.53 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: 0.15 Total: -28.07 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.60 -7.30 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162659469.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.076 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds