Wall clock time and date at job start Mon Mar 30 2020 04:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86808 * 119.99550 * 2 1 4 4 H 1.48497 * 109.47213 * 270.00170 * 3 2 1 5 5 H 1.48496 * 109.47235 * 30.00530 * 3 2 1 6 6 H 1.48508 * 109.46870 * 150.00733 * 3 2 1 7 7 C 1.39585 * 120.00697 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00561 * 179.97438 * 7 2 1 9 9 N 1.36118 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00262 * 180.02562 * 9 7 2 11 11 O 1.21504 * 119.99603 * 0.02562 * 10 9 7 12 12 C 1.48828 * 120.00195 * 180.02562 * 10 9 7 13 13 O 1.21434 * 120.00173 * 359.97438 * 12 10 9 14 14 N 1.34783 * 119.99857 * 180.02562 * 12 10 9 15 15 C 1.47400 * 126.02093 * 359.97080 * 14 12 10 16 16 C 1.55322 * 107.49684 * 182.19013 * 15 14 12 17 17 C 1.55959 * 102.27399 * 21.64844 * 16 15 14 18 18 H 1.09002 * 112.77667 * 203.78231 * 17 16 15 19 19 C 1.53012 * 106.58140 * 79.95442 * 17 16 15 20 20 C 1.52682 * 110.68735 * 196.83420 * 19 17 16 21 21 C 1.53247 * 108.66992 * 61.97204 * 20 19 17 22 22 C 1.52869 * 108.42920 * 296.81605 * 21 20 19 23 23 C 1.46516 * 126.01905 * 179.97438 * 14 12 10 24 24 H 1.08996 * 107.94504 * 270.04847 * 23 14 12 25 25 H 0.96995 * 120.00431 * 359.97438 * 1 2 3 26 26 H 0.97004 * 120.00192 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.90342 * 300.88903 * 15 14 12 28 28 H 1.09001 * 109.90211 * 61.94711 * 15 14 12 29 29 H 1.09004 * 110.45880 * 263.71011 * 16 15 14 30 30 H 1.08997 * 111.45435 * 140.03686 * 16 15 14 31 31 H 1.09000 * 109.23651 * 317.14725 * 19 17 16 32 32 H 1.09007 * 109.23316 * 76.52397 * 19 17 16 33 33 H 1.08993 * 109.60547 * 181.72933 * 20 19 17 34 34 H 1.09006 * 109.60077 * 302.21970 * 20 19 17 35 35 H 1.08994 * 109.67493 * 56.55154 * 21 20 19 36 36 H 1.09002 * 109.66742 * 177.04719 * 21 20 19 37 37 H 1.09000 * 109.12346 * 179.65410 * 22 21 20 38 38 H 1.09004 * 109.12236 * 298.79610 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6179 0.0000 4 1 2.4915 2.0466 -1.4000 5 1 1.4415 2.6527 0.7001 6 1 3.5418 1.4403 0.6999 7 6 2.0082 -1.2088 -0.0005 8 1 3.0882 -1.2087 -0.0010 9 7 1.3277 -2.3876 -0.0005 10 6 2.0016 -3.5548 -0.0005 11 8 3.2166 -3.5547 -0.0001 12 6 1.2575 -4.8437 -0.0011 13 8 0.0431 -4.8438 -0.0011 14 7 1.9315 -6.0109 -0.0006 15 6 3.3974 -6.1655 -0.0001 16 6 3.7066 -7.6865 -0.0562 17 6 2.3870 -8.2716 -0.6466 18 1 2.2385 -9.3205 -0.3900 19 6 2.4462 -8.0434 -2.1585 20 6 1.0599 -8.1916 -2.7810 21 6 0.1377 -7.1225 -2.1851 22 6 0.0038 -7.3816 -0.6845 23 6 1.3361 -7.3497 -0.0005 24 1 1.1984 -7.6559 1.0364 25 1 -0.4850 0.8400 0.0004 26 1 0.3576 -2.3877 -0.0005 27 1 3.8218 -5.6813 -0.8796 28 1 3.8166 -5.7248 0.9045 29 1 3.8877 -8.0757 0.9458 30 1 4.5508 -7.8978 -0.7125 31 1 2.8229 -7.0397 -2.3557 32 1 3.1206 -8.7736 -2.6057 33 1 1.1274 -8.0561 -3.8604 34 1 0.6631 -9.1822 -2.5584 35 1 0.5669 -6.1343 -2.3500 36 1 -0.8432 -7.1799 -2.6570 37 1 -0.6457 -6.6231 -0.2477 38 1 -0.4414 -8.3646 -0.5302 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162659469.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:26 Heat of formation + Delta-G solvation = -97.800589 kcal Electronic energy + Delta-G solvation = -21220.096673 eV Core-core repulsion = 18061.037609 eV Total energy + Delta-G solvation = -3159.059064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.05006 -40.19281 -38.63296 -36.54399 -35.79843 -33.61725 -33.19142 -31.08819 -29.08004 -27.84787 -25.45902 -23.99561 -23.24440 -22.27989 -21.00093 -20.32026 -19.46199 -18.13275 -17.53034 -17.32328 -16.73168 -16.17343 -15.79950 -15.64668 -15.57012 -15.17080 -14.93113 -14.38071 -14.20025 -13.69155 -13.54379 -13.34910 -13.16626 -12.97619 -12.80450 -12.64066 -12.55912 -12.34548 -12.12779 -11.96288 -11.78513 -11.66984 -11.42681 -10.98258 -10.89678 -10.28043 -9.95218 -9.64167 -8.66239 -6.11458 0.62513 1.38685 1.45366 1.53593 1.73875 2.26579 2.37159 3.06440 3.14400 3.55703 3.60041 3.77841 3.98368 4.08357 4.19787 4.22831 4.37948 4.46755 4.54183 4.58726 4.63656 4.78062 4.95569 5.01483 5.03921 5.09253 5.17728 5.23191 5.24020 5.27428 5.33527 5.37257 5.54867 5.68286 5.70057 6.23918 6.36532 6.77592 7.00126 7.29219 7.80239 8.49867 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032378 B = 0.005167 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.581166 B = 5417.690713 C = 5811.720571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.006 4.006 3 Si 1.011 2.989 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.515 5.515 10 C 0.391 3.609 11 O -0.608 6.608 12 C 0.528 3.472 13 O -0.560 6.560 14 N -0.585 5.585 15 C 0.109 3.891 16 C -0.118 4.118 17 C -0.082 4.082 18 H 0.137 0.863 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.112 4.112 22 C -0.137 4.137 23 C 0.133 3.867 24 H 0.071 0.929 25 H 0.288 0.712 26 H 0.399 0.601 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.034 0.966 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.018 0.982 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -17.384 -2.436 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.210 4.210 3 Si 0.831 3.169 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.115 0.885 9 N -0.149 5.149 10 C 0.175 3.825 11 O -0.497 6.497 12 C 0.314 3.686 13 O -0.440 6.440 14 N -0.318 5.318 15 C -0.013 4.013 16 C -0.156 4.156 17 C -0.101 4.101 18 H 0.155 0.845 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.174 4.174 23 C 0.031 3.969 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.233 0.767 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.636 -17.176 -2.421 17.723 hybrid contribution -0.426 1.466 0.081 1.529 sum 3.210 -15.710 -2.340 16.204 Atomic orbital electron populations 1.69555 1.07856 1.30724 1.45547 1.26541 0.96499 1.03454 0.94467 0.84691 0.77977 0.75024 0.79175 1.18966 1.19055 1.18796 1.19942 0.93566 0.83082 1.50855 0.88492 1.41634 1.10092 1.04734 1.58449 1.19689 0.88026 0.85280 0.89465 1.90528 1.13662 1.87170 1.58325 1.19757 0.86661 0.84808 0.77414 1.90593 1.14131 1.87395 1.51848 1.48053 1.08886 1.04730 1.70153 1.22348 0.78729 0.98624 1.01624 1.23169 0.98378 0.90668 1.03370 1.22497 0.92673 0.99826 0.95110 0.84537 1.21559 0.97651 1.01360 0.94572 1.21520 0.94907 0.99044 0.99437 1.21417 0.99875 0.97984 0.95738 1.21283 0.96604 1.03562 0.95969 1.21270 0.94609 0.80771 1.00202 0.91135 0.90172 0.76678 0.92937 0.92432 0.88841 0.87685 0.94704 0.89057 0.91863 0.89371 0.96354 0.91903 0.91614 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.65 13.03 21.76 0.28 -49.36 16 2 C -0.01 -0.31 5.51 85.14 0.47 0.16 16 3 Si 1.01 41.75 29.56 68.60 2.03 43.78 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.34 -19.97 9.67 84.35 0.82 -19.15 16 8 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 9 N -0.51 -29.40 5.25 -308.88 -1.62 -31.02 16 10 C 0.39 21.01 7.79 87.08 0.68 21.69 16 11 O -0.61 -33.93 13.72 -3.73 -0.05 -33.98 16 12 C 0.53 24.60 7.16 87.08 0.62 25.23 16 13 O -0.56 -27.38 13.86 -3.51 -0.05 -27.42 16 14 N -0.58 -21.38 3.01 -797.08 -2.40 -23.78 16 15 C 0.11 3.50 4.79 87.01 0.42 3.92 16 16 C -0.12 -2.26 6.40 32.42 0.21 -2.05 16 17 C -0.08 -1.51 3.65 -9.42 -0.03 -1.55 16 18 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 19 C -0.11 -2.25 4.89 30.49 0.15 -2.10 16 20 C -0.11 -2.24 5.92 30.57 0.18 -2.06 16 21 C -0.11 -3.17 5.85 30.63 0.18 -2.99 16 22 C -0.14 -3.84 4.75 29.52 0.14 -3.70 16 23 C 0.13 3.62 2.84 44.30 0.13 3.75 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.29 14.55 8.30 -92.71 -0.77 13.78 16 26 H 0.40 23.12 7.35 -92.71 -0.68 22.43 16 27 H 0.05 1.90 7.29 -2.39 -0.02 1.88 16 28 H 0.06 2.03 7.73 -2.39 -0.02 2.02 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.60 7.96 -2.39 -0.02 1.58 16 31 H 0.03 0.92 6.98 -2.39 -0.02 0.90 16 32 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.02 0.65 7.51 -2.39 -0.02 0.64 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 37 H 0.07 2.39 5.52 -2.39 -0.01 2.37 16 38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -69.16 299.90 2.53 -66.63 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.39 Total: 34.03 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 3.95 Total: 21.13 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -3.74 Total: -104.17 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -0.10 Total: -61.40 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -69.16 2.53 -66.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162659469.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.171 kcal (2) G-P(sol) polarization free energy of solvation -69.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds