Wall clock time and date at job start Mon Mar 30 2020 05:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46952 * 2 1 4 4 O 1.33490 * 126.82724 * 269.97563 * 3 2 1 5 5 N 1.20666 * 113.15380 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.29823 * 359.68552 * 5 4 3 7 7 C 1.50698 * 127.33370 * 180.29834 * 6 5 4 8 8 C 1.37355 * 126.82576 * 89.99887 * 3 2 1 9 9 C 1.47398 * 128.56778 * 359.97438 * 8 3 2 10 10 O 1.21610 * 120.00362 * 89.72229 * 9 8 3 11 11 N 1.34784 * 119.99800 * 269.99573 * 9 8 3 12 12 C 1.46499 * 119.99893 * 179.72628 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46990 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47356 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99756 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00089 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00095 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99896 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47136 * 89.99694 * 19 17 15 21 21 H 1.48504 * 109.46915 * 209.99773 * 19 17 15 22 22 H 1.48503 * 109.47098 * 329.99627 * 19 17 15 23 23 H 1.08999 * 109.47632 * 300.00234 * 1 2 3 24 24 H 1.09007 * 109.47036 * 59.99829 * 1 2 3 25 25 H 1.08998 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47004 * 240.00133 * 2 1 3 27 27 H 1.08996 * 109.47208 * 119.99721 * 2 1 3 28 28 H 1.08998 * 109.47329 * 270.19740 * 7 6 5 29 29 H 1.09002 * 109.47139 * 30.19667 * 7 6 5 30 30 H 1.08997 * 109.47469 * 150.19695 * 7 6 5 31 31 H 0.97005 * 119.99846 * 359.72416 * 11 9 8 32 32 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 33 33 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 34 34 H 1.09000 * 109.47195 * 299.99415 * 13 12 11 35 35 H 1.08994 * 109.47584 * 59.99634 * 13 12 11 36 36 H 1.09005 * 109.47033 * 299.99952 * 14 13 12 37 37 H 1.08999 * 109.47677 * 59.99180 * 14 13 12 38 38 H 0.96996 * 120.00083 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2995 2.1751 -1.0685 5 7 2.6906 3.2804 -0.7833 6 6 2.7492 3.4665 0.5021 7 6 3.1822 4.7153 1.2260 8 6 2.3067 2.1971 1.0995 9 6 2.1823 1.8468 2.5258 10 8 3.1221 1.3463 3.1133 11 7 1.0251 2.0762 3.1776 12 6 0.8994 1.7226 4.5937 13 6 -0.5033 2.0835 5.0869 14 6 -0.6343 1.7147 6.5660 15 6 -2.0156 2.0707 7.0520 16 1 -2.7286 2.5158 6.3738 17 6 -2.3689 1.8291 8.3627 18 7 -1.5005 1.2875 9.1886 19 14 -4.0809 2.2710 8.9653 20 1 -4.9896 1.1133 8.7672 21 1 -4.0242 2.6145 10.4089 22 1 -4.5899 3.4366 8.1987 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.2572 4.6789 1.4023 29 1 2.9429 5.5885 0.6191 30 1 2.6597 4.7819 2.1802 31 1 0.2754 2.4755 2.7090 32 1 1.0631 0.6520 4.7167 33 1 1.6412 2.2725 5.1727 34 1 -0.6674 3.1540 4.9638 35 1 -1.2448 1.5333 4.5078 36 1 -0.4699 0.6442 6.6895 37 1 0.1072 2.2652 7.1449 38 1 -1.7491 1.1172 10.1106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171508197.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:01 Heat of formation + Delta-G solvation = -7.350661 kcal Electronic energy + Delta-G solvation = -19696.142674 eV Core-core repulsion = 16541.005813 eV Total energy + Delta-G solvation = -3155.136861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.03918 -39.48156 -35.52594 -35.06504 -34.70530 -33.34366 -31.35189 -30.45455 -28.99513 -27.06577 -24.92165 -23.93126 -22.80684 -20.94140 -20.55348 -19.77677 -17.91707 -17.88405 -16.54052 -16.39987 -15.61242 -15.51637 -14.86926 -14.50989 -14.40692 -13.87376 -13.63663 -13.48968 -13.35378 -13.13567 -12.77674 -12.33303 -11.95666 -11.91596 -11.82339 -11.70856 -11.13370 -10.93844 -10.80834 -10.66269 -10.29351 -10.04720 -9.93120 -9.58062 -9.47758 -9.16855 -8.93338 -8.40905 -6.05517 -4.08834 1.12495 1.73720 2.40045 2.65126 3.28296 3.31214 3.35188 3.38025 3.94303 4.03735 4.41217 4.62901 4.64282 4.81675 4.92307 5.01893 5.23291 5.26368 5.30470 5.40197 5.48856 5.51633 5.62402 5.65376 5.68691 5.82962 5.87110 6.07386 6.33195 6.51586 6.73027 6.92689 7.53190 7.58790 7.70558 7.92728 8.03540 8.17921 8.33857 8.97751 9.55703 11.05734 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027213 B = 0.003500 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.685191 B = 7998.614408 C = 8299.093689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C 0.020 3.980 4 O 0.095 5.905 5 N -0.358 5.358 6 C 0.054 3.946 7 C -0.078 4.078 8 C -0.246 4.246 9 C 0.593 3.407 10 O -0.528 6.528 11 N -0.712 5.712 12 C 0.115 3.885 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.400 0.600 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 0.963 -19.377 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 C -0.043 4.043 4 O 0.034 5.966 5 N -0.065 5.065 6 C -0.108 4.108 7 C -0.136 4.136 8 C -0.254 4.254 9 C 0.376 3.624 10 O -0.404 6.404 11 N -0.362 5.362 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.234 0.766 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.544 1.291 -19.799 20.892 hybrid contribution -1.324 0.163 0.953 1.640 sum 5.220 1.454 -18.845 19.609 Atomic orbital electron populations 1.21804 0.92662 1.03389 1.03016 1.20284 0.97221 0.85770 1.05369 1.24677 0.98264 0.96293 0.85102 1.84518 1.61594 1.17491 1.32988 1.73607 1.17591 0.98691 1.16605 1.24770 1.00419 0.96579 0.89010 1.20236 1.02583 0.91077 0.99674 1.22032 1.12579 0.95345 0.95418 1.16896 0.83178 0.78521 0.83767 1.90834 1.38629 1.43281 1.67705 1.46215 1.14198 1.62848 1.12989 1.21749 0.99886 1.00843 0.78222 1.21900 0.92388 1.00660 1.00928 1.19031 0.97254 0.97180 0.87905 1.21189 0.98303 1.41163 0.95513 0.92646 1.25022 0.97245 0.95186 0.96940 1.69959 1.34565 1.43398 1.05309 0.86586 0.84577 0.78771 0.78013 1.20637 1.21185 1.19884 0.91773 0.91851 0.90702 0.88685 0.88125 0.89572 0.89908 0.89630 0.76569 0.91400 0.91418 0.92644 0.92628 0.96226 0.96226 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.05 -0.39 6.38 -27.88 -0.18 -0.57 16 3 C 0.02 0.22 6.80 -34.63 -0.24 -0.01 16 4 O 0.10 1.13 11.06 18.66 0.21 1.33 16 5 N -0.36 -4.60 12.01 34.78 0.42 -4.18 16 6 C 0.05 0.67 7.59 -79.77 -0.61 0.07 16 7 C -0.08 -0.76 10.49 36.00 0.38 -0.38 16 8 C -0.25 -3.18 6.24 -102.89 -0.64 -3.82 16 9 C 0.59 8.84 7.60 -12.53 -0.10 8.74 16 10 O -0.53 -9.89 17.11 5.27 0.09 -9.80 16 11 N -0.71 -9.80 5.55 -61.39 -0.34 -10.14 16 12 C 0.12 1.91 5.67 -4.04 -0.02 1.88 16 13 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.40 4.59 8.46 -40.82 -0.35 4.25 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -32.28 333.83 -6.41 -38.69 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.80 Total: -1.59 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.72 Total: -9.82 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.81 Total: -39.94 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.30 Total: -8.47 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.28 -6.41 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171508197.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.342 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds