Wall clock time and date at job start Mon Mar 30 2020 05:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46952 * 2 1 4 4 O 1.33490 * 126.82724 * 269.97563 * 3 2 1 5 5 N 1.20666 * 113.15380 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.29823 * 359.68552 * 5 4 3 7 7 C 1.50698 * 127.33370 * 180.29834 * 6 5 4 8 8 C 1.37355 * 126.82576 * 89.99887 * 3 2 1 9 9 C 1.47398 * 128.56778 * 359.97438 * 8 3 2 10 10 O 1.21610 * 120.00362 * 89.72229 * 9 8 3 11 11 N 1.34784 * 119.99800 * 269.99573 * 9 8 3 12 12 C 1.46499 * 119.99893 * 179.72628 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46990 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47356 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99756 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00089 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00095 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99896 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47136 * 89.99694 * 19 17 15 21 21 H 1.48504 * 109.46915 * 209.99773 * 19 17 15 22 22 H 1.48503 * 109.47098 * 329.99627 * 19 17 15 23 23 H 1.08999 * 109.47632 * 300.00234 * 1 2 3 24 24 H 1.09007 * 109.47036 * 59.99829 * 1 2 3 25 25 H 1.08998 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47004 * 240.00133 * 2 1 3 27 27 H 1.08996 * 109.47208 * 119.99721 * 2 1 3 28 28 H 1.08998 * 109.47329 * 270.19740 * 7 6 5 29 29 H 1.09002 * 109.47139 * 30.19667 * 7 6 5 30 30 H 1.08997 * 109.47469 * 150.19695 * 7 6 5 31 31 H 0.97005 * 119.99846 * 359.72416 * 11 9 8 32 32 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 33 33 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 34 34 H 1.09000 * 109.47195 * 299.99415 * 13 12 11 35 35 H 1.08994 * 109.47584 * 59.99634 * 13 12 11 36 36 H 1.09005 * 109.47033 * 299.99952 * 14 13 12 37 37 H 1.08999 * 109.47677 * 59.99180 * 14 13 12 38 38 H 0.96996 * 120.00083 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2995 2.1751 -1.0685 5 7 2.6906 3.2804 -0.7833 6 6 2.7492 3.4665 0.5021 7 6 3.1822 4.7153 1.2260 8 6 2.3067 2.1971 1.0995 9 6 2.1823 1.8468 2.5258 10 8 3.1221 1.3463 3.1133 11 7 1.0251 2.0762 3.1776 12 6 0.8994 1.7226 4.5937 13 6 -0.5033 2.0835 5.0869 14 6 -0.6343 1.7147 6.5660 15 6 -2.0156 2.0707 7.0520 16 1 -2.7286 2.5158 6.3738 17 6 -2.3689 1.8291 8.3627 18 7 -1.5005 1.2875 9.1886 19 14 -4.0809 2.2710 8.9653 20 1 -4.9896 1.1133 8.7672 21 1 -4.0242 2.6145 10.4089 22 1 -4.5899 3.4366 8.1987 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.2572 4.6789 1.4023 29 1 2.9429 5.5885 0.6191 30 1 2.6597 4.7819 2.1802 31 1 0.2754 2.4755 2.7090 32 1 1.0631 0.6520 4.7167 33 1 1.6412 2.2725 5.1727 34 1 -0.6674 3.1540 4.9638 35 1 -1.2448 1.5333 4.5078 36 1 -0.4699 0.6442 6.6895 37 1 0.1072 2.2652 7.1449 38 1 -1.7491 1.1172 10.1106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171508197.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:01 Heat of formation + Delta-G solvation = -27.804265 kcal Electronic energy + Delta-G solvation = -19697.029608 eV Core-core repulsion = 16541.005813 eV Total energy + Delta-G solvation = -3156.023796 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.97543 -40.73919 -37.02407 -35.87947 -35.60507 -35.18225 -33.04432 -31.36609 -29.84567 -28.74611 -26.19757 -24.79586 -24.29866 -22.34898 -21.83809 -20.80126 -19.00940 -18.85639 -18.47401 -17.45970 -16.99251 -16.72121 -16.43245 -15.88963 -15.37897 -15.09156 -14.65822 -14.38185 -14.23340 -14.22720 -13.87513 -13.76972 -13.51778 -13.46597 -12.75434 -12.58106 -12.54434 -12.50028 -12.39279 -11.87706 -11.74354 -11.67557 -11.31281 -11.11759 -10.99666 -10.53833 -10.51326 -10.23286 -8.18336 -6.29385 0.21894 0.78794 1.22830 1.43185 1.43950 1.54818 1.70403 2.20430 2.43595 3.05167 3.15888 3.17068 3.67151 3.82467 4.07979 4.16169 4.20959 4.21633 4.28384 4.46004 4.53503 4.55027 4.66173 4.76948 4.93366 4.94301 4.97176 5.02741 5.05405 5.17707 5.31218 5.32378 5.53318 5.72363 5.85878 6.23366 6.37679 6.88216 7.01287 7.12263 7.40310 8.93643 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027213 B = 0.003500 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.685191 B = 7998.614408 C = 8299.093689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C 0.040 3.960 4 O 0.096 5.904 5 N -0.373 5.373 6 C 0.052 3.948 7 C -0.080 4.080 8 C -0.274 4.274 9 C 0.603 3.397 10 O -0.570 6.570 11 N -0.697 5.697 12 C 0.129 3.871 13 C -0.102 4.102 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.066 0.934 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.261 1.261 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.415 0.585 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.070 0.930 36 H -0.005 1.005 37 H -0.007 1.007 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 1.402 -20.990 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.024 4.024 4 O 0.036 5.964 5 N -0.082 5.082 6 C -0.110 4.110 7 C -0.137 4.137 8 C -0.281 4.281 9 C 0.388 3.612 10 O -0.450 6.450 11 N -0.348 5.348 12 C 0.006 3.994 13 C -0.140 4.140 14 C -0.014 4.014 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.789 3.211 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.185 1.185 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.140 0.860 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.251 0.749 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.133 1.745 -21.455 22.129 hybrid contribution -0.864 -0.005 1.425 1.667 sum 4.268 1.740 -20.030 20.553 Atomic orbital electron populations 1.21810 0.91649 1.04372 1.02815 1.20484 0.97935 0.84018 1.06322 1.25165 0.96112 0.96854 0.84293 1.84508 1.61475 1.17376 1.33027 1.73601 1.18533 0.99249 1.16778 1.25153 0.99765 0.97099 0.88966 1.20359 1.02920 0.90701 0.99759 1.21838 1.15186 0.96547 0.94518 1.17028 0.82448 0.77364 0.84369 1.90814 1.40034 1.45247 1.68863 1.45952 1.14651 1.62413 1.11781 1.21370 0.98334 1.00096 0.79642 1.21603 0.93858 1.01475 0.97035 1.18944 0.95682 0.95205 0.91600 1.21675 0.99446 1.40728 0.95975 0.91609 1.25979 1.01540 0.95083 0.97318 1.70101 1.36884 1.44782 1.05699 0.85457 0.79364 0.78969 0.77311 1.19824 1.21158 1.18510 0.92971 0.91035 0.89174 0.86037 0.88858 0.88986 0.88258 0.89508 0.74857 0.92307 0.92607 0.91459 0.91163 0.98688 0.98845 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.05 -0.70 6.38 29.85 0.19 -0.51 16 3 C 0.04 0.81 6.80 25.48 0.17 0.99 16 4 O 0.10 2.10 11.06 77.00 0.85 2.95 16 5 N -0.37 -9.09 12.01 -44.77 -0.54 -9.63 16 6 C 0.05 1.23 7.59 45.16 0.34 1.58 16 7 C -0.08 -1.45 10.49 71.24 0.75 -0.70 16 8 C -0.27 -6.78 6.24 -18.75 -0.12 -6.90 16 9 C 0.60 17.67 7.60 86.65 0.66 18.33 16 10 O -0.57 -21.54 17.11 -4.06 -0.07 -21.60 16 11 N -0.70 -18.51 5.55 -466.39 -2.59 -21.10 16 12 C 0.13 4.25 5.67 86.38 0.49 4.74 16 13 C -0.10 -3.70 5.27 30.60 0.16 -3.54 16 14 C 0.02 1.17 4.97 29.85 0.15 1.32 16 15 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 16 H 0.07 3.36 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 18 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 19 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.41 8.76 8.46 -92.70 -0.78 7.98 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 38 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -69.64 333.83 4.44 -65.20 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.27 Total: 9.48 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.20 Total: -14.52 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -2.84 Total: -86.47 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.78 Total: -18.65 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -69.64 4.44 -65.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171508197.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.400 kcal (2) G-P(sol) polarization free energy of solvation -69.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds