Wall clock time and date at job start Mon Mar 30 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46982 * 2 1 4 4 C 1.50700 * 109.47443 * 239.99974 * 2 1 3 5 5 H 1.07997 * 119.99854 * 239.99921 * 4 2 1 6 6 C 1.37878 * 119.99886 * 59.99772 * 4 2 1 7 7 N 1.31522 * 119.99908 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00150 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46905 * 60.00056 * 8 6 4 10 10 H 1.48494 * 109.47303 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47008 * 300.00117 * 8 6 4 12 12 C 1.53000 * 109.46982 * 119.99915 * 2 1 3 13 13 O 1.45198 * 109.46978 * 300.00163 * 12 2 1 14 14 C 1.34230 * 116.99780 * 180.02562 * 13 12 2 15 15 O 1.20831 * 120.00242 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00138 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 13 18 18 N 1.46506 * 109.47035 * 179.97438 * 17 16 14 19 19 C 1.34944 * 126.03372 * 125.00124 * 18 17 16 20 20 C 1.35317 * 107.74658 * 179.97438 * 19 18 17 21 21 C 1.39871 * 107.91935 * 0.02562 * 20 19 18 22 22 N 1.30845 * 108.20108 * 359.74200 * 21 20 19 23 23 H 1.08999 * 109.47428 * 299.99893 * 1 2 3 24 24 H 1.08996 * 109.46783 * 60.00075 * 1 2 3 25 25 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47498 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47639 * 300.00246 * 3 2 1 28 28 H 1.08999 * 109.47410 * 60.00089 * 3 2 1 29 29 H 0.97002 * 119.99397 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46668 * 180.02562 * 12 2 1 31 31 H 1.08998 * 109.47020 * 60.00316 * 12 2 1 32 32 H 1.09004 * 109.47043 * 59.99923 * 16 14 13 33 33 H 1.09004 * 109.47476 * 299.99997 * 16 14 13 34 34 H 1.09004 * 109.46930 * 60.00105 * 17 16 14 35 35 H 1.09000 * 109.47312 * 300.00049 * 17 16 14 36 36 H 1.08001 * 126.12891 * 0.02562 * 19 18 17 37 37 H 1.08002 * 126.04160 * 179.97438 * 20 19 18 38 38 H 1.07995 * 125.90070 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8260 -2.5201 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1208 -4.0081 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9170 -0.5465 3.6228 15 8 2.6149 -1.5318 3.6706 16 6 1.4530 0.1107 4.8971 17 6 2.0000 -0.6631 6.0985 18 7 1.5494 -0.0238 7.3373 19 6 0.8804 -0.6252 8.3431 20 6 0.6510 0.3041 9.2996 21 6 1.1981 1.5151 8.8631 22 7 1.7415 1.3185 7.6891 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7096 1.1618 -3.4844 30 1 3.1301 -0.7208 1.2494 31 1 1.6767 -1.7489 1.2492 32 1 0.3635 0.1100 4.9304 33 1 1.8169 1.1377 4.9297 34 1 3.0895 -0.6628 6.0653 35 1 1.6358 -1.6899 6.0657 36 1 0.5822 -1.6626 8.3788 37 1 0.1358 0.1400 10.2345 38 1 1.1790 2.4499 9.4034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184759727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:47 Heat of formation + Delta-G solvation = -18.483145 kcal Electronic energy + Delta-G solvation = -19744.824956 eV Core-core repulsion = 16589.205355 eV Total energy + Delta-G solvation = -3155.619601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.31163 -40.06543 -36.83818 -34.94314 -34.45383 -31.35337 -30.71902 -29.78813 -26.14547 -25.64756 -25.27895 -24.36991 -21.33320 -21.11673 -20.21089 -18.90146 -17.86935 -16.76755 -16.42184 -15.99594 -15.70137 -15.15690 -14.68149 -14.56917 -14.05190 -13.58364 -13.09382 -13.02354 -12.87545 -12.72071 -12.42531 -11.83622 -11.65015 -11.47867 -11.20931 -10.97977 -10.80450 -10.76533 -10.44321 -10.33508 -10.15198 -9.94963 -9.63938 -9.45219 -9.35498 -8.80777 -8.79116 -8.39927 -6.04391 -4.16473 1.70497 2.21514 2.46286 2.67688 3.19229 3.27613 3.32336 3.36422 4.29393 4.36530 4.54976 4.64151 4.82178 5.04033 5.21899 5.23119 5.30535 5.47155 5.57671 5.64483 5.81547 6.02234 6.05254 6.42063 6.45831 6.70488 6.78859 6.95143 6.99532 7.10828 7.12103 7.36784 7.52068 7.59273 7.67293 8.02320 8.06650 8.17279 8.36031 8.83274 9.49210 10.96799 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.052229 B = 0.003232 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.968085 B = 8660.334489 C = 8890.782470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.070 3.930 3 C -0.130 4.130 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.084 3.916 13 O -0.345 6.345 14 C 0.461 3.539 15 O -0.523 6.523 16 C -0.128 4.128 17 C 0.147 3.853 18 N -0.372 5.372 19 C 0.056 3.944 20 C -0.278 4.278 21 C 0.043 3.957 22 N -0.294 5.294 23 H 0.016 0.984 24 H 0.084 0.916 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.084 0.916 28 H 0.017 0.983 29 H 0.262 0.738 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.174 0.826 37 H 0.146 0.854 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 -0.926 19.034 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.070 3.930 3 C -0.188 4.188 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.012 3.988 13 O -0.260 6.260 14 C 0.304 3.696 15 O -0.414 6.414 16 C -0.167 4.167 17 C 0.026 3.974 18 N -0.154 5.154 19 C -0.090 4.090 20 C -0.308 4.308 21 C -0.143 4.143 22 N -0.116 5.116 23 H 0.035 0.965 24 H 0.103 0.897 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.103 0.897 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.191 0.809 37 H 0.164 0.836 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.858 -0.639 17.726 17.758 hybrid contribution -0.063 -1.028 -0.173 1.044 sum -0.921 -1.667 17.553 17.656 Atomic orbital electron populations 1.21776 0.97324 0.98939 1.00720 1.18245 0.93426 0.93098 0.88240 1.21778 0.98108 0.98169 1.00734 1.20897 1.32144 1.12372 0.89823 0.92540 1.24860 0.94759 0.94901 0.98797 1.69823 1.36213 1.22507 1.23464 0.86590 0.79228 0.79740 0.82046 1.20233 1.21174 1.20227 1.23727 0.98281 0.95790 0.81049 1.86528 1.68845 1.55775 1.14876 1.23150 0.77628 0.82350 0.86489 1.90644 1.36205 1.26074 1.88473 1.21516 1.04013 1.02318 0.88812 1.21475 1.01386 0.95680 0.78876 1.48759 1.43701 1.07512 1.15459 1.22626 0.97269 0.99858 0.89283 1.21520 1.13080 0.93128 1.03043 1.23918 0.97493 0.99448 0.93453 1.77388 1.23841 0.94159 1.16203 0.96469 0.89692 0.95831 0.95802 0.89688 0.96442 0.92798 0.92402 0.92425 0.87381 0.86447 0.88578 0.87519 0.80891 0.83576 0.80061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.11 37.16 0.30 -2.81 16 2 C 0.07 1.71 0.58 -155.66 -0.09 1.62 16 3 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 4 C -0.51 -13.69 8.01 -34.44 -0.28 -13.97 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 7 N -0.88 -23.93 9.35 55.43 0.52 -23.41 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.08 1.84 4.26 37.16 0.16 2.00 16 13 O -0.35 -6.72 8.88 -39.26 -0.35 -7.07 16 14 C 0.46 7.59 7.96 36.00 0.29 7.87 16 15 O -0.52 -9.61 15.73 -18.75 -0.30 -9.91 16 16 C -0.13 -1.56 6.00 -27.88 -0.17 -1.73 16 17 C 0.15 1.57 5.80 -4.04 -0.02 1.54 16 18 N -0.37 -4.12 3.68 -61.36 -0.23 -4.34 16 19 C 0.06 0.50 11.45 -17.22 -0.20 0.30 16 20 C -0.28 -2.43 10.80 -40.01 -0.43 -2.86 16 21 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 22 N -0.29 -3.68 12.42 30.63 0.38 -3.30 16 23 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 24 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 28 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 32 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 34 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.11 0.96 8.03 -51.93 -0.42 0.55 16 36 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -30.22 321.86 -6.19 -36.42 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.61 Total: -0.05 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.44 Total: -8.91 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.67 Total: -31.05 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.64 Total: -16.98 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.22 -6.19 -36.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184759727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.933 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds