Wall clock time and date at job start Mon Mar 30 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46982 * 2 1 4 4 C 1.50700 * 109.47443 * 239.99974 * 2 1 3 5 5 H 1.07997 * 119.99854 * 239.99921 * 4 2 1 6 6 C 1.37878 * 119.99886 * 59.99772 * 4 2 1 7 7 N 1.31522 * 119.99908 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00150 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46905 * 60.00056 * 8 6 4 10 10 H 1.48494 * 109.47303 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47008 * 300.00117 * 8 6 4 12 12 C 1.53000 * 109.46982 * 119.99915 * 2 1 3 13 13 O 1.45198 * 109.46978 * 300.00163 * 12 2 1 14 14 C 1.34230 * 116.99780 * 180.02562 * 13 12 2 15 15 O 1.20831 * 120.00242 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00138 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 13 18 18 N 1.46506 * 109.47035 * 179.97438 * 17 16 14 19 19 C 1.34944 * 126.03372 * 125.00124 * 18 17 16 20 20 C 1.35317 * 107.74658 * 179.97438 * 19 18 17 21 21 C 1.39871 * 107.91935 * 0.02562 * 20 19 18 22 22 N 1.30845 * 108.20108 * 359.74200 * 21 20 19 23 23 H 1.08999 * 109.47428 * 299.99893 * 1 2 3 24 24 H 1.08996 * 109.46783 * 60.00075 * 1 2 3 25 25 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47498 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47639 * 300.00246 * 3 2 1 28 28 H 1.08999 * 109.47410 * 60.00089 * 3 2 1 29 29 H 0.97002 * 119.99397 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46668 * 180.02562 * 12 2 1 31 31 H 1.08998 * 109.47020 * 60.00316 * 12 2 1 32 32 H 1.09004 * 109.47043 * 59.99923 * 16 14 13 33 33 H 1.09004 * 109.47476 * 299.99997 * 16 14 13 34 34 H 1.09004 * 109.46930 * 60.00105 * 17 16 14 35 35 H 1.09000 * 109.47312 * 300.00049 * 17 16 14 36 36 H 1.08001 * 126.12891 * 0.02562 * 19 18 17 37 37 H 1.08002 * 126.04160 * 179.97438 * 20 19 18 38 38 H 1.07995 * 125.90070 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8260 -2.5201 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1208 -4.0081 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9170 -0.5465 3.6228 15 8 2.6149 -1.5318 3.6706 16 6 1.4530 0.1107 4.8971 17 6 2.0000 -0.6631 6.0985 18 7 1.5494 -0.0238 7.3373 19 6 0.8804 -0.6252 8.3431 20 6 0.6510 0.3041 9.2996 21 6 1.1981 1.5151 8.8631 22 7 1.7415 1.3185 7.6891 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7096 1.1618 -3.4844 30 1 3.1301 -0.7208 1.2494 31 1 1.6767 -1.7489 1.2492 32 1 0.3635 0.1100 4.9304 33 1 1.8169 1.1377 4.9297 34 1 3.0895 -0.6628 6.0653 35 1 1.6358 -1.6899 6.0657 36 1 0.5822 -1.6626 8.3788 37 1 0.1358 0.1400 10.2345 38 1 1.1790 2.4499 9.4034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184759727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:46 Heat of formation + Delta-G solvation = -34.658253 kcal Electronic energy + Delta-G solvation = -19745.526362 eV Core-core repulsion = 16589.205355 eV Total energy + Delta-G solvation = -3156.321007 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.06306 -41.46269 -38.46416 -36.68495 -35.38368 -33.29715 -31.58937 -30.58891 -27.72069 -27.59339 -27.19252 -25.56761 -22.31515 -21.93075 -21.22180 -20.74683 -19.00339 -17.97349 -17.72581 -17.66806 -17.24399 -16.56548 -16.11596 -15.43355 -15.11182 -14.92946 -14.66406 -14.36115 -14.04975 -13.67072 -13.54103 -13.36144 -13.29437 -13.06736 -12.82931 -12.66557 -12.49780 -12.34519 -12.15203 -11.74813 -11.71557 -11.53866 -11.29135 -11.21593 -10.75986 -10.41478 -10.40591 -9.50932 -8.05742 -6.24364 0.98358 1.12837 1.36206 1.44259 1.45037 1.52177 1.96971 2.01428 2.44885 3.17740 3.44874 3.60884 3.82312 4.09665 4.14924 4.24486 4.26094 4.27437 4.48589 4.60113 4.65242 4.82131 4.84151 4.93669 5.03217 5.17504 5.20003 5.20431 5.34790 5.56862 5.61790 5.64263 5.78597 6.05791 6.12325 6.16191 6.35224 6.68295 6.80057 6.81467 7.43961 8.93739 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.052229 B = 0.003232 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.968085 B = 8660.334489 C = 8890.782470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.060 3.940 3 C -0.120 4.120 4 C -0.536 4.536 5 H 0.051 0.949 6 C 0.028 3.972 7 N -0.901 5.901 8 Si 0.953 3.047 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.275 1.275 12 C 0.096 3.904 13 O -0.354 6.354 14 C 0.462 3.538 15 O -0.542 6.542 16 C -0.113 4.113 17 C 0.152 3.848 18 N -0.384 5.384 19 C 0.054 3.946 20 C -0.284 4.284 21 C 0.038 3.962 22 N -0.341 5.341 23 H 0.031 0.969 24 H 0.062 0.938 25 H 0.022 0.978 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.206 0.794 37 H 0.171 0.829 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 -1.521 20.466 20.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 C -0.178 4.178 4 C -0.574 4.574 5 H 0.069 0.931 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.200 1.200 12 C 0.023 3.977 13 O -0.270 6.270 14 C 0.307 3.693 15 O -0.433 6.433 16 C -0.151 4.151 17 C 0.031 3.969 18 N -0.167 5.167 19 C -0.091 4.091 20 C -0.313 4.313 21 C -0.147 4.147 22 N -0.163 5.163 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.223 0.777 37 H 0.188 0.812 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.312 -1.233 19.183 19.268 hybrid contribution 0.060 -0.827 -0.501 0.969 sum -1.252 -2.060 18.683 18.838 Atomic orbital electron populations 1.21626 0.97100 0.98688 1.00282 1.18266 0.93638 0.93171 0.88924 1.21637 0.97767 0.98110 1.00269 1.21194 1.32446 1.12587 0.91167 0.93072 1.25527 0.94938 0.95547 1.01233 1.69942 1.36696 1.23283 1.23933 0.85698 0.78664 0.78781 0.78985 1.19874 1.20753 1.20014 1.23279 0.97624 0.95286 0.81486 1.86513 1.69238 1.55944 1.15289 1.23911 0.76860 0.82045 0.86507 1.90637 1.37023 1.27073 1.88538 1.21506 1.04839 1.01894 0.86848 1.21413 1.00887 0.96253 0.78393 1.48777 1.44611 1.07427 1.15886 1.23264 0.96058 1.01348 0.88454 1.21902 1.12869 0.92547 1.03944 1.24461 0.96472 1.00929 0.92883 1.77340 1.25818 0.95343 1.17816 0.94954 0.91904 0.95923 0.96121 0.91845 0.95029 0.92820 0.93105 0.92775 0.85796 0.86517 0.89508 0.85685 0.77738 0.81192 0.77844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.11 71.98 0.58 -5.10 16 2 C 0.06 2.94 0.58 -52.93 -0.03 2.91 16 3 C -0.12 -5.80 8.11 71.98 0.58 -5.21 16 4 C -0.54 -28.63 8.01 25.60 0.21 -28.43 16 5 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 6 C 0.03 1.47 5.15 84.65 0.44 1.90 16 7 N -0.90 -49.09 9.35 21.45 0.20 -48.89 16 8 Si 0.95 42.41 29.54 68.60 2.03 44.43 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 C 0.10 4.19 4.26 71.98 0.31 4.50 16 13 O -0.35 -13.47 8.88 -51.41 -0.46 -13.92 16 14 C 0.46 14.71 7.96 71.23 0.57 15.28 16 15 O -0.54 -19.42 15.73 21.95 0.35 -19.07 16 16 C -0.11 -2.57 6.00 29.85 0.18 -2.39 16 17 C 0.15 2.99 5.80 86.38 0.50 3.49 16 18 N -0.38 -7.82 3.68 -348.04 -1.28 -9.10 16 19 C 0.05 0.82 11.45 83.54 0.96 1.78 16 20 C -0.28 -4.22 10.80 21.99 0.24 -3.98 16 21 C 0.04 0.69 12.03 85.24 1.03 1.72 16 22 N -0.34 -8.13 12.42 -57.02 -0.71 -8.84 16 23 H 0.03 1.39 7.68 -2.39 -0.02 1.37 16 24 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 25 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 28 H 0.03 1.38 7.68 -2.39 -0.02 1.36 16 29 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.05 2.24 8.13 -2.38 -0.02 2.23 16 31 H 0.05 2.36 8.13 -2.39 -0.02 2.34 16 32 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.09 1.85 8.10 -2.38 -0.02 1.84 16 35 H 0.13 1.96 8.03 -2.39 -0.02 1.94 16 36 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -63.99 321.86 6.71 -57.28 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.04 Total: 11.65 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 5.55 Total: -13.53 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -1.79 Total: -66.83 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.11 Total: -33.00 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -63.99 6.71 -57.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184759727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.620 kcal (2) G-P(sol) polarization free energy of solvation -63.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds