Wall clock time and date at job start Mon Mar 30 2020 04:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30431 * 125.99097 * 2 1 4 4 N 1.39927 * 108.91842 * 180.02562 * 3 2 1 5 5 C 1.46503 * 125.74545 * 179.97438 * 4 3 2 6 6 C 1.34228 * 108.51059 * 359.72868 * 4 3 2 7 7 C 1.38126 * 107.41019 * 0.43185 * 6 4 3 8 8 C 1.47285 * 126.43014 * 179.83656 * 7 6 4 9 9 O 1.21523 * 119.99985 * 179.68303 * 8 7 6 10 10 O 1.34752 * 119.99540 * 359.68841 * 8 7 6 11 11 C 1.45202 * 116.99593 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47124 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47178 * 300.00219 * 12 11 10 14 14 C 1.53004 * 109.47054 * 59.99991 * 12 11 10 15 15 C 1.50698 * 109.47419 * 180.02562 * 12 11 10 16 16 H 1.07998 * 119.99728 * 1.36374 * 15 12 11 17 17 C 1.37877 * 120.00083 * 181.35810 * 15 12 11 18 18 N 1.31517 * 119.99779 * 193.95898 * 17 15 12 19 19 Si 1.86801 * 120.00001 * 13.96710 * 17 15 12 20 20 H 1.48498 * 109.46862 * 84.55242 * 19 17 15 21 21 H 1.48497 * 109.46700 * 204.55285 * 19 17 15 22 22 H 1.48494 * 109.46836 * 324.55186 * 19 17 15 23 23 H 1.08999 * 109.46837 * 269.97280 * 1 2 3 24 24 H 1.08999 * 109.47452 * 29.97327 * 1 2 3 25 25 H 1.09001 * 109.47035 * 149.97643 * 1 2 3 26 26 H 1.09004 * 109.46635 * 89.97615 * 5 4 3 27 27 H 1.08994 * 109.47017 * 209.97530 * 5 4 3 28 28 H 1.08995 * 109.46675 * 329.97929 * 5 4 3 29 29 H 1.08007 * 126.29612 * 180.26871 * 6 4 3 30 30 H 1.08991 * 109.47588 * 299.99636 * 11 10 8 31 31 H 1.09008 * 109.47249 * 60.00085 * 11 10 8 32 32 H 1.09000 * 109.46967 * 69.31228 * 13 12 11 33 33 H 1.08997 * 109.47014 * 189.31427 * 13 12 11 34 34 H 1.08998 * 109.46998 * 309.31597 * 13 12 11 35 35 H 1.08996 * 109.46696 * 60.00148 * 14 12 11 36 36 H 1.09003 * 109.46910 * 180.02562 * 14 12 11 37 37 H 1.09002 * 109.47140 * 300.00160 * 14 12 11 38 38 H 0.96999 * 119.99827 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6112 0.6445 -0.0006 5 6 4.7784 1.5299 -0.0013 6 6 3.6448 -0.6973 0.0051 7 6 2.3377 -1.1436 -0.0007 8 6 1.8928 -2.5476 -0.0009 9 8 0.7060 -2.8090 -0.0005 10 8 2.8019 -3.5423 -0.0015 11 6 2.2915 -4.9017 -0.0011 12 6 3.4627 -5.8862 -0.0025 13 6 4.3159 -5.6621 -1.2526 14 6 4.3185 -5.6624 1.2459 15 6 2.9330 -7.2971 -0.0027 16 1 1.8678 -7.4739 -0.0242 17 6 3.8083 -8.3620 0.0244 18 7 3.3778 -9.5741 -0.2501 19 14 5.6054 -8.0834 0.4513 20 1 5.7691 -8.0826 1.9272 21 1 6.4282 -9.1703 -0.1375 22 1 6.0472 -6.7758 -0.0966 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 5.0680 1.7500 1.0262 27 1 5.6055 1.0402 -0.5151 28 1 4.5298 2.4583 -0.5155 29 1 4.5311 -1.3146 0.0102 30 1 1.6834 -5.0613 0.8892 31 1 1.6821 -5.0613 -0.8907 32 1 4.8316 -4.7051 -1.1737 33 1 5.0491 -6.4638 -1.3405 34 1 3.6747 -5.6578 -2.1341 35 1 3.7107 -5.8221 2.1365 36 1 5.1531 -6.3636 1.2447 37 1 4.7016 -4.6420 1.2457 38 1 3.9935 -10.3234 -0.2307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184764671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:32 Heat of formation + Delta-G solvation = -0.889433 kcal Electronic energy + Delta-G solvation = -20379.764783 eV Core-core repulsion = 17224.908102 eV Total energy + Delta-G solvation = -3154.856681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52035 -39.50763 -36.72537 -34.99037 -34.11435 -31.74800 -30.84931 -29.54454 -26.76294 -26.27621 -25.71583 -24.87139 -22.75731 -20.83030 -19.65542 -19.06929 -17.59577 -16.55602 -16.11507 -15.93133 -15.46883 -15.44404 -15.11684 -14.35021 -13.74423 -13.48867 -13.21721 -13.14410 -12.84636 -12.77114 -12.32376 -12.31074 -12.17240 -11.97570 -11.87768 -11.58084 -11.02989 -10.46416 -10.32718 -10.23092 -10.06175 -9.90864 -9.68657 -9.51197 -9.09495 -8.81701 -8.64557 -8.46045 -6.15090 -4.13034 1.35538 2.01668 2.12724 3.26773 3.31669 3.34798 3.40325 3.41823 4.15879 4.36980 4.56595 4.72568 4.79007 5.04779 5.09008 5.16791 5.36733 5.51401 5.64351 5.81846 5.84098 5.91773 5.95791 6.16940 6.29858 6.42393 6.53950 6.60153 6.61134 6.71139 6.77923 6.90658 7.12774 7.23376 7.42259 7.46148 7.72139 8.32320 8.43496 8.88163 9.48509 10.97756 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.004738 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.250129 B = 5908.757865 C = 6613.938669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.136 3.864 3 N -0.306 5.306 4 N -0.366 5.366 5 C 0.098 3.902 6 C 0.128 3.872 7 C -0.274 4.274 8 C 0.536 3.464 9 O -0.519 6.519 10 O -0.355 6.355 11 C 0.096 3.904 12 C 0.043 3.957 13 C -0.139 4.139 14 C -0.145 4.145 15 C -0.518 4.518 16 H 0.076 0.924 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.885 3.115 20 H -0.285 1.285 21 H -0.305 1.305 22 H -0.247 1.247 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.193 0.807 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 20.735 0.478 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 N -0.128 5.128 4 N -0.143 5.143 5 C -0.043 4.043 6 C -0.024 4.024 7 C -0.287 4.287 8 C 0.380 3.620 9 O -0.409 6.409 10 O -0.271 6.271 11 C 0.023 3.977 12 C 0.042 3.958 13 C -0.196 4.196 14 C -0.202 4.202 15 C -0.555 4.555 16 H 0.094 0.906 17 C -0.125 4.125 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.213 1.213 21 H -0.234 1.234 22 H -0.173 1.173 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.210 0.790 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.448 21.795 0.447 22.070 hybrid contribution 1.054 -1.027 0.354 1.514 sum 4.503 20.768 0.801 21.266 Atomic orbital electron populations 1.20381 0.85498 1.04168 1.03708 1.22494 0.97317 0.88463 0.94866 1.77172 0.85987 1.22448 1.27233 1.48312 1.06171 1.04950 1.54905 1.21997 0.83789 0.94634 1.03908 1.23333 0.99576 0.84660 0.94814 1.19504 0.92492 0.91834 1.24878 1.19918 0.84208 0.85057 0.72780 1.90774 1.17914 1.84856 1.47378 1.86506 1.39677 1.17567 1.83386 1.23369 0.97994 0.74641 1.01692 1.18590 0.91175 0.93752 0.92317 1.22216 0.99590 0.99124 0.98659 1.22283 0.99469 0.98779 0.99640 1.20677 0.95274 0.86975 1.52585 0.90582 1.24914 0.98635 0.94892 0.94038 1.69947 1.36146 0.99682 1.46930 0.87286 0.85660 0.76966 0.78335 1.21287 1.23376 1.17257 0.90055 0.90953 0.88489 0.90213 0.88878 0.88900 0.79013 0.91797 0.91692 0.95063 0.92798 0.93766 0.93167 0.94278 0.94199 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 9.92 36.01 0.36 -0.59 16 2 C 0.14 1.91 7.27 -82.01 -0.60 1.32 16 3 N -0.31 -4.10 12.50 33.90 0.42 -3.67 16 4 N -0.37 -3.96 3.98 -67.58 -0.27 -4.22 16 5 C 0.10 0.55 11.44 59.85 0.68 1.23 16 6 C 0.13 1.50 11.33 -16.55 -0.19 1.31 16 7 C -0.27 -4.08 6.13 -105.08 -0.64 -4.73 16 8 C 0.54 9.53 7.95 34.41 0.27 9.80 16 9 O -0.52 -10.25 14.71 -19.28 -0.28 -10.53 16 10 O -0.36 -6.60 8.89 -40.63 -0.36 -6.96 16 11 C 0.10 2.02 4.26 37.16 0.16 2.17 16 12 C 0.04 0.97 0.58 -155.65 -0.09 0.88 16 13 C -0.14 -2.97 7.58 37.16 0.28 -2.69 16 14 C -0.14 -3.09 7.55 37.16 0.28 -2.81 16 15 C -0.52 -14.12 8.62 -34.44 -0.30 -14.42 16 16 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.08 2.19 5.32 -17.82 -0.09 2.09 16 18 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 19 Si 0.89 21.31 22.79 -169.99 -3.87 17.44 16 20 H -0.29 -6.82 7.10 56.52 0.40 -6.42 16 21 H -0.31 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.25 -5.46 4.65 56.52 0.26 -5.19 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.10 1.28 6.56 -51.93 -0.34 0.94 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.19 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 32 H 0.03 0.59 7.94 -51.93 -0.41 0.17 16 33 H 0.05 1.20 4.30 -51.93 -0.22 0.98 16 34 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 37 H 0.04 0.74 7.68 -51.93 -0.40 0.34 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -32.99 309.95 -4.20 -37.19 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.41 Total: -1.54 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 0.13 Total: -6.43 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.93 Total: -33.83 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.64 Total: -17.50 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -3.87 Total: 17.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.99 -4.20 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184764671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.300 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds