Wall clock time and date at job start Mon Mar 30 2020 04:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30431 * 125.99097 * 2 1 4 4 N 1.39927 * 108.91842 * 180.02562 * 3 2 1 5 5 C 1.46503 * 125.74545 * 179.97438 * 4 3 2 6 6 C 1.34228 * 108.51059 * 359.72868 * 4 3 2 7 7 C 1.38126 * 107.41019 * 0.43185 * 6 4 3 8 8 C 1.47285 * 126.43014 * 179.83656 * 7 6 4 9 9 O 1.21523 * 119.99985 * 179.68303 * 8 7 6 10 10 O 1.34752 * 119.99540 * 359.68841 * 8 7 6 11 11 C 1.45202 * 116.99593 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47124 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47178 * 300.00219 * 12 11 10 14 14 C 1.53004 * 109.47054 * 59.99991 * 12 11 10 15 15 C 1.50698 * 109.47419 * 180.02562 * 12 11 10 16 16 H 1.07998 * 119.99728 * 1.36374 * 15 12 11 17 17 C 1.37877 * 120.00083 * 181.35810 * 15 12 11 18 18 N 1.31517 * 119.99779 * 193.95898 * 17 15 12 19 19 Si 1.86801 * 120.00001 * 13.96710 * 17 15 12 20 20 H 1.48498 * 109.46862 * 84.55242 * 19 17 15 21 21 H 1.48497 * 109.46700 * 204.55285 * 19 17 15 22 22 H 1.48494 * 109.46836 * 324.55186 * 19 17 15 23 23 H 1.08999 * 109.46837 * 269.97280 * 1 2 3 24 24 H 1.08999 * 109.47452 * 29.97327 * 1 2 3 25 25 H 1.09001 * 109.47035 * 149.97643 * 1 2 3 26 26 H 1.09004 * 109.46635 * 89.97615 * 5 4 3 27 27 H 1.08994 * 109.47017 * 209.97530 * 5 4 3 28 28 H 1.08995 * 109.46675 * 329.97929 * 5 4 3 29 29 H 1.08007 * 126.29612 * 180.26871 * 6 4 3 30 30 H 1.08991 * 109.47588 * 299.99636 * 11 10 8 31 31 H 1.09008 * 109.47249 * 60.00085 * 11 10 8 32 32 H 1.09000 * 109.46967 * 69.31228 * 13 12 11 33 33 H 1.08997 * 109.47014 * 189.31427 * 13 12 11 34 34 H 1.08998 * 109.46998 * 309.31597 * 13 12 11 35 35 H 1.08996 * 109.46696 * 60.00148 * 14 12 11 36 36 H 1.09003 * 109.46910 * 180.02562 * 14 12 11 37 37 H 1.09002 * 109.47140 * 300.00160 * 14 12 11 38 38 H 0.96999 * 119.99827 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6112 0.6445 -0.0006 5 6 4.7784 1.5299 -0.0013 6 6 3.6448 -0.6973 0.0051 7 6 2.3377 -1.1436 -0.0007 8 6 1.8928 -2.5476 -0.0009 9 8 0.7060 -2.8090 -0.0005 10 8 2.8019 -3.5423 -0.0015 11 6 2.2915 -4.9017 -0.0011 12 6 3.4627 -5.8862 -0.0025 13 6 4.3159 -5.6621 -1.2526 14 6 4.3185 -5.6624 1.2459 15 6 2.9330 -7.2971 -0.0027 16 1 1.8678 -7.4739 -0.0242 17 6 3.8083 -8.3620 0.0244 18 7 3.3778 -9.5741 -0.2501 19 14 5.6054 -8.0834 0.4513 20 1 5.7691 -8.0826 1.9272 21 1 6.4282 -9.1703 -0.1375 22 1 6.0472 -6.7758 -0.0966 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 5.0680 1.7500 1.0262 27 1 5.6055 1.0402 -0.5151 28 1 4.5298 2.4583 -0.5155 29 1 4.5311 -1.3146 0.0102 30 1 1.6834 -5.0613 0.8892 31 1 1.6821 -5.0613 -0.8907 32 1 4.8316 -4.7051 -1.1737 33 1 5.0491 -6.4638 -1.3405 34 1 3.6747 -5.6578 -2.1341 35 1 3.7107 -5.8221 2.1365 36 1 5.1531 -6.3636 1.2447 37 1 4.7016 -4.6420 1.2457 38 1 3.9935 -10.3234 -0.2307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184764671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:32 Heat of formation + Delta-G solvation = -22.876361 kcal Electronic energy + Delta-G solvation = -20380.718207 eV Core-core repulsion = 17224.908102 eV Total energy + Delta-G solvation = -3155.810106 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.49050 -40.93778 -38.37828 -36.60935 -34.97382 -33.82601 -31.86640 -30.36706 -28.18635 -27.93118 -27.07217 -26.65960 -23.88040 -21.96106 -20.89448 -20.68001 -18.83037 -17.99647 -17.70194 -17.38347 -17.14232 -16.50811 -16.45818 -15.30483 -15.02902 -14.91599 -14.73518 -14.33698 -14.15065 -14.08006 -13.77906 -13.68386 -13.34652 -13.24526 -13.01632 -12.99664 -12.39114 -12.19438 -12.03121 -11.95553 -11.82319 -11.38919 -11.31981 -11.03239 -10.60166 -10.41856 -10.38026 -9.80477 -8.30909 -6.33571 0.35678 0.94847 1.35322 1.39352 1.39774 1.53096 1.92737 2.17311 2.35812 3.05396 3.30885 3.72007 4.03259 4.07181 4.16128 4.19728 4.38572 4.44926 4.45324 4.48012 4.66947 4.73062 4.73181 4.84908 4.88042 4.91882 4.95308 4.98324 5.14152 5.20972 5.39924 5.47950 5.64021 5.71611 5.77982 5.84247 6.28463 6.46598 6.69668 6.91432 7.31673 8.85937 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.004738 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.250129 B = 5908.757865 C = 6613.938669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.125 3.875 3 N -0.323 5.323 4 N -0.356 5.356 5 C 0.085 3.915 6 C 0.150 3.850 7 C -0.312 4.312 8 C 0.535 3.465 9 O -0.550 6.550 10 O -0.345 6.345 11 C 0.108 3.892 12 C 0.038 3.962 13 C -0.136 4.136 14 C -0.143 4.143 15 C -0.524 4.524 16 H 0.030 0.970 17 C 0.021 3.979 18 N -0.943 5.943 19 Si 0.943 3.057 20 H -0.279 1.279 21 H -0.312 1.312 22 H -0.205 1.205 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.099 0.901 29 H 0.227 0.773 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.777 23.747 0.785 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.042 4.042 3 N -0.145 5.145 4 N -0.132 5.132 5 C -0.054 4.054 6 C -0.004 4.004 7 C -0.325 4.325 8 C 0.382 3.618 9 O -0.442 6.442 10 O -0.261 6.261 11 C 0.034 3.966 12 C 0.038 3.962 13 C -0.194 4.194 14 C -0.200 4.200 15 C -0.561 4.561 16 H 0.048 0.952 17 C -0.176 4.176 18 N -0.582 5.582 19 Si 0.772 3.228 20 H -0.207 1.207 21 H -0.241 1.241 22 H -0.129 1.129 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.142 0.858 28 H 0.118 0.882 29 H 0.243 0.757 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.653 24.881 0.754 25.766 hybrid contribution -0.013 -1.853 0.241 1.869 sum 6.640 23.028 0.995 23.987 Atomic orbital electron populations 1.20368 0.85069 1.04100 1.04070 1.22716 0.98062 0.88500 0.94955 1.77136 0.87365 1.22358 1.27673 1.48772 1.06408 1.05408 1.52649 1.22496 0.82658 0.94539 1.05673 1.23752 0.99248 0.85222 0.92179 1.19445 0.94424 0.90026 1.28558 1.20435 0.83760 0.85830 0.71787 1.90763 1.19144 1.85286 1.49001 1.86468 1.39487 1.16392 1.83776 1.22931 0.97054 0.76186 1.00397 1.18533 0.92146 0.91236 0.94324 1.22151 0.99185 1.00635 0.97386 1.22229 0.98801 1.00806 0.98159 1.20953 0.93359 0.90048 1.51766 0.95189 1.25795 1.03770 0.94300 0.93779 1.70098 1.38105 1.00954 1.49075 0.86341 0.79591 0.78531 0.78355 1.20668 1.24115 1.12901 0.89474 0.89153 0.90325 0.88484 0.85757 0.88219 0.75684 0.93078 0.93294 0.91488 0.93568 0.94298 0.93635 0.94627 0.90615 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 9.92 71.24 0.71 -1.13 16 2 C 0.12 3.35 7.27 43.53 0.32 3.66 16 3 N -0.32 -7.89 12.50 -46.65 -0.58 -8.48 16 4 N -0.36 -6.35 3.98 -367.73 -1.46 -7.82 16 5 C 0.08 0.56 11.44 127.77 1.46 2.02 16 6 C 0.15 2.93 11.33 84.30 0.96 3.88 16 7 C -0.31 -8.71 6.13 -20.16 -0.12 -8.84 16 8 C 0.53 18.63 7.95 70.20 0.56 19.19 16 9 O -0.55 -22.19 14.71 19.76 0.29 -21.90 16 10 O -0.35 -12.18 8.89 -56.63 -0.50 -12.69 16 11 C 0.11 4.54 4.26 71.98 0.31 4.85 16 12 C 0.04 1.71 0.58 -52.92 -0.03 1.68 16 13 C -0.14 -5.46 7.58 71.98 0.55 -4.92 16 14 C -0.14 -5.65 7.55 71.98 0.54 -5.11 16 15 C -0.52 -29.29 8.62 25.60 0.22 -29.07 16 16 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 17 C 0.02 1.22 5.32 84.65 0.45 1.67 16 18 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 19 Si 0.94 42.86 22.79 68.60 1.56 44.42 16 20 H -0.28 -12.40 7.10 99.48 0.71 -11.69 16 21 H -0.31 -14.45 7.11 99.48 0.71 -13.75 16 22 H -0.21 -7.99 4.65 99.48 0.46 -7.52 16 23 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.08 2.15 6.56 -2.39 -0.02 2.14 16 26 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.23 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.07 2.20 7.94 -2.39 -0.02 2.18 16 33 H 0.05 1.91 4.30 -2.39 -0.01 1.90 16 34 H 0.04 1.56 8.12 -2.39 -0.02 1.54 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.43 2.25 -2.39 -0.01 1.42 16 37 H 0.08 2.44 7.68 -2.39 -0.02 2.42 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -74.36 309.95 6.33 -68.03 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.82 Total: 8.74 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.91 Total: -12.11 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.75 Total: -74.48 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.21 Total: -34.58 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.56 Total: 44.42 kcal Total: -74.36 6.33 -68.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184764671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.150 kcal (2) G-P(sol) polarization free energy of solvation -74.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds