Wall clock time and date at job start Mon Mar 30 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34947 * 126.04219 * 2 1 4 4 C 1.35318 * 107.75010 * 179.97438 * 3 2 1 5 5 C 1.39874 * 107.91554 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.89233 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47373 * 125.01244 * 6 5 4 8 8 O 1.20828 * 120.00061 * 359.97438 * 7 6 5 9 9 O 1.34229 * 120.00108 * 179.97438 * 7 6 5 10 10 C 1.45203 * 116.99749 * 180.02562 * 9 7 6 11 11 C 1.53010 * 109.46743 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46911 * 299.99677 * 11 10 9 13 13 C 1.52995 * 109.47139 * 60.00125 * 11 10 9 14 14 C 1.50701 * 109.46588 * 179.97438 * 11 10 9 15 15 H 1.07996 * 120.00554 * 356.85693 * 14 11 10 16 16 C 1.37884 * 119.99509 * 176.86320 * 14 11 10 17 17 N 1.31515 * 120.00085 * 5.81724 * 16 14 11 18 18 Si 1.86794 * 120.00005 * 185.81791 * 16 14 11 19 19 H 1.48497 * 109.47001 * 85.02197 * 18 16 14 20 20 H 1.48493 * 109.47328 * 205.02529 * 18 16 14 21 21 H 1.48507 * 109.47041 * 325.02444 * 18 16 14 22 22 N 1.30836 * 108.20682 * 359.97438 * 5 4 3 23 23 H 1.08996 * 109.47085 * 270.02652 * 1 2 3 24 24 H 1.09001 * 109.46978 * 30.02622 * 1 2 3 25 25 H 1.08993 * 109.47074 * 150.02598 * 1 2 3 26 26 H 1.08006 * 126.12339 * 359.95843 * 3 2 1 27 27 H 1.07994 * 126.03935 * 179.97438 * 4 3 2 28 28 H 1.09009 * 109.46770 * 245.00753 * 6 5 4 29 29 H 1.09000 * 109.47747 * 5.00885 * 6 5 4 30 30 H 1.09001 * 109.47317 * 299.99719 * 10 9 7 31 31 H 1.08994 * 109.47388 * 60.00417 * 10 9 7 32 32 H 1.09004 * 109.46793 * 53.83176 * 12 11 10 33 33 H 1.09003 * 109.46410 * 173.82914 * 12 11 10 34 34 H 1.08992 * 109.47121 * 293.82547 * 12 11 10 35 35 H 1.08993 * 109.47545 * 59.99795 * 13 11 10 36 36 H 1.09006 * 109.47293 * 180.02562 * 13 11 10 37 37 H 1.09007 * 109.47014 * 299.99695 * 13 11 10 38 38 H 0.96996 * 119.99934 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 3.5346 -0.7323 0.0003 6 6 4.7496 -1.6238 0.0003 7 6 4.6724 -2.5784 1.1637 8 8 3.7278 -2.5386 1.9162 9 8 5.6529 -3.4729 1.3642 10 6 5.5118 -4.3611 2.5042 11 6 6.7167 -5.3020 2.5697 12 6 6.7883 -6.1291 1.2845 13 6 7.9983 -4.4798 2.7192 14 6 6.5706 -6.2234 3.7532 15 1 5.7312 -6.1125 4.4236 16 6 7.5088 -7.2080 3.9802 17 7 8.5895 -7.2713 3.2334 18 14 7.2449 -8.4519 5.3485 19 1 6.4038 -9.5683 4.8471 20 1 8.5579 -8.9831 5.7946 21 1 6.5632 -7.7932 6.4916 22 7 2.2891 -1.1329 0.0002 23 1 -0.3633 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.9282 2.1193 -0.0006 27 1 4.4211 1.2962 0.0003 28 1 4.7857 -2.1886 -0.9314 29 1 5.6482 -1.0134 0.0901 30 1 5.4613 -3.7719 3.4198 31 1 4.5986 -4.9465 2.3979 32 1 6.7836 -5.4620 0.4224 33 1 7.7050 -6.7189 1.2827 34 1 5.9274 -6.7956 1.2329 35 1 7.9472 -3.8906 3.6347 36 1 8.8567 -5.1501 2.7654 37 1 8.1041 -3.8130 1.8634 38 1 9.2493 -7.9642 3.3929 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184774145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:37 Heat of formation + Delta-G solvation = -34.949961 kcal Electronic energy + Delta-G solvation = -19948.895532 eV Core-core repulsion = 16792.561876 eV Total energy + Delta-G solvation = -3156.333656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18835 -41.21598 -38.30135 -36.57024 -34.85504 -33.28452 -31.58207 -30.76480 -27.70400 -27.55505 -27.21428 -26.38237 -22.74739 -22.03361 -20.70747 -20.51441 -18.65584 -17.94538 -17.68743 -17.42996 -17.16488 -16.54786 -16.15814 -15.23175 -14.97763 -14.91930 -14.57640 -14.37453 -13.89897 -13.66798 -13.43849 -13.31183 -13.16833 -13.07717 -12.94773 -12.76474 -12.62973 -12.30591 -12.14391 -11.70188 -11.62755 -11.49077 -11.25858 -11.14975 -10.73553 -10.39262 -10.23644 -9.47073 -8.05447 -6.22184 0.95543 1.30107 1.42832 1.44100 1.51960 1.58863 1.72138 2.15852 2.46660 3.18053 3.47849 3.89175 3.95034 4.18858 4.26267 4.30408 4.36944 4.42648 4.51289 4.62472 4.67554 4.83006 4.87540 4.89897 5.06477 5.12321 5.21383 5.25170 5.38267 5.60689 5.65012 5.65694 5.73053 6.08052 6.18763 6.22417 6.37419 6.78320 6.79481 6.88161 7.45147 8.94866 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.041558 B = 0.003614 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.600581 B = 7746.442554 C = 8103.941938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.385 5.385 3 C 0.058 3.942 4 C -0.279 4.279 5 C 0.057 3.943 6 C -0.024 4.024 7 C 0.452 3.548 8 O -0.542 6.542 9 O -0.351 6.351 10 C 0.099 3.901 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.118 4.118 14 C -0.539 4.539 15 H 0.046 0.954 16 C 0.030 3.970 17 N -0.898 5.898 18 Si 0.951 3.049 19 H -0.277 1.277 20 H -0.280 1.280 21 H -0.275 1.275 22 N -0.325 5.325 23 H 0.076 0.924 24 H 0.126 0.874 25 H 0.082 0.918 26 H 0.220 0.780 27 H 0.175 0.825 28 H 0.139 0.861 29 H 0.159 0.841 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.353 17.632 -9.556 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.168 5.168 3 C -0.087 4.087 4 C -0.307 4.307 5 C -0.109 4.109 6 C -0.063 4.063 7 C 0.296 3.704 8 O -0.432 6.432 9 O -0.267 6.267 10 C 0.026 3.974 11 C 0.061 3.939 12 C -0.174 4.174 13 C -0.175 4.175 14 C -0.577 4.577 15 H 0.064 0.936 16 C -0.170 4.170 17 N -0.536 5.536 18 Si 0.777 3.223 19 H -0.202 1.202 20 H -0.205 1.205 21 H -0.200 1.200 22 N -0.149 5.149 23 H 0.095 0.905 24 H 0.144 0.856 25 H 0.101 0.899 26 H 0.236 0.764 27 H 0.192 0.808 28 H 0.156 0.844 29 H 0.176 0.824 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.416 16.507 -9.331 22.133 hybrid contribution 0.165 -0.395 1.149 1.226 sum -11.251 16.112 -8.183 21.287 Atomic orbital electron populations 1.22161 0.72325 1.05997 1.04155 1.48917 1.07989 1.03573 1.56288 1.23260 0.90513 0.94787 1.00184 1.21753 0.98991 0.92871 1.17129 1.21886 0.92445 0.95052 1.01519 1.19814 0.96677 0.94296 0.95490 1.24285 0.79467 0.80160 0.86533 1.90642 1.34451 1.70285 1.47840 1.86492 1.46664 1.44636 1.48903 1.23172 1.00126 0.89637 0.84488 1.18269 0.89975 0.91039 0.94634 1.21596 1.00825 0.98844 0.96155 1.21631 1.00411 0.98045 0.97456 1.21202 1.09460 1.16083 1.10921 0.93580 1.25495 0.94473 0.98737 0.98331 1.69954 1.09470 1.33763 1.40370 0.85681 0.77486 0.79446 0.79660 1.20245 1.20491 1.19954 1.77353 1.02597 1.10002 1.24923 0.90513 0.85552 0.89937 0.76391 0.80788 0.84359 0.82366 0.93666 0.93922 0.94431 0.91990 0.96390 0.96239 0.91770 0.94501 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 11.47 127.77 1.47 2.70 16 2 N -0.38 -8.73 4.01 -369.57 -1.48 -10.21 16 3 C 0.06 1.01 11.49 83.54 0.96 1.97 16 4 C -0.28 -5.75 10.72 21.99 0.24 -5.51 16 5 C 0.06 1.57 6.02 43.10 0.26 1.83 16 6 C -0.02 -0.61 6.39 29.10 0.19 -0.43 16 7 C 0.45 16.73 7.95 71.23 0.57 17.30 16 8 O -0.54 -24.19 15.31 21.96 0.34 -23.85 16 9 O -0.35 -14.25 8.77 -51.41 -0.45 -14.70 16 10 C 0.10 4.65 4.26 71.99 0.31 4.96 16 11 C 0.06 3.09 0.58 -52.92 -0.03 3.06 16 12 C -0.12 -5.72 8.06 71.98 0.58 -5.14 16 13 C -0.12 -5.73 8.14 71.98 0.59 -5.15 16 14 C -0.54 -29.86 8.01 25.60 0.20 -29.65 16 15 H 0.05 2.58 7.75 -2.91 -0.02 2.55 16 16 C 0.03 1.63 5.13 84.66 0.43 2.07 16 17 N -0.90 -49.57 9.46 21.45 0.20 -49.37 16 18 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 N -0.33 -10.39 11.92 -47.38 -0.57 -10.95 16 23 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.22 1.44 8.06 -2.91 -0.02 1.42 16 27 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 28 H 0.14 2.93 8.14 -2.38 -0.02 2.91 16 29 H 0.16 2.80 8.12 -2.39 -0.02 2.78 16 30 H 0.04 2.17 8.13 -2.39 -0.02 2.15 16 31 H 0.04 2.07 8.13 -2.39 -0.02 2.05 16 32 H 0.04 1.65 7.50 -2.38 -0.02 1.63 16 33 H 0.06 3.26 6.25 -2.39 -0.01 3.24 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 3.38 6.11 -2.38 -0.01 3.37 16 37 H 0.04 1.60 7.68 -2.38 -0.02 1.58 16 38 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -74.03 321.51 6.86 -67.17 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.04 Total: 8.41 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 5.75 Total: -12.01 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -1.85 Total: -70.53 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -0.11 Total: -38.55 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -74.03 6.86 -67.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184774145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.219 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds